SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00528
Pre Gene Modal
BGIBMGA012269
Annotation
PREDICTED:_SH2_domain-containing_protein_3C_isoform_X2_[Bombyx_mori]
Location
Bomo_Chr1(-):15425215-15429379      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 2.106
 

Sequence

CDS
ATGGATTCTTGCGCCATGAGTACGTCTGGTCTCTTAGAATGGGAGTTTTCTTTGCCGGCTGATCAAATAATTTCCCATGGATGGTACCACGGAGCGTTGAGCCGGACCGCTGCCGAGAGCTTGTTGCAGAAAGACAGGGAGTTCCTGGTGAGGGATTCGTCATCGCAACCGGATAACTATGTGCTGAGCTGCCGTTCTAATGGACAGCATTTACATTTCGTCATACAACGAATCGTTGTTCACCCAGAAACTGTTTACGAGAGATACCAATACCAATTCGAAGATGAAGCTTATGATACTGTTGCCGATCTCATTACTTCATACGTTGGTTCAGGGAAACCCATATCTGCCGCTTCTGGCGCCAGAATACAGTATCCAGCCAACCGAATGATGCCGCTGACTAATTATATACAAGGCGACGACATTAATTCCGTAATTTCACCGGTAGGCGACGGAGCGCTTTACGGTAACTCTTATAGTCTGTACAGTCATTTCGCTGCGAAACCTGGAATGCAATTGCGAGTGCCTTTTAAGAAACAACGTTCACATTCTCTGACTCCTATAGATATAGGACAGCACGTCGCTCAAGGCAAAAGCGCTAGCGCCGATGGCGTCATACTAAACCAAACAAATAAACACACCAAGACACTCTCCGGTGATTCCAACTCTAGCTCCGGTACATGGGATACCAACTTGCCTACAAGTCCACCAGCCAAGCCCGCTAGATATGACGGTCCAAAGGCTGATGATCGAAGACTCGAACTCCAACGAATCTACCAAGTATCGGGGTCCGATTCAGGAAACGGATCCGGAGACTCTACTCAAAGTTCTGCTCATGGAGATCCAAATAAATCAAGAATCGATTCAGATTACAACTTGATTACACCCACCAATAAACAGCAATTCGACTATGATCTTACTGAAGCAAAACTACTTCAATCGGACAACTTGGACTATGTTGTGGAATCAAGGATAAATTTGGGAAGTTTTCAATCCATGATAATACCTACGGGTCTTACGAAGCCACTAGAATCTGAAACTTTGCACGCAATCAAACTACTCTTGAGAACATCCGGACCCCGCATCCTAGCAATTCATTTGACGAAAGTCGATTTGTACTTTTTATTCGATGATGCTATTCAAATTGAGGGGTTAGATAAAACTGCGTCTGGTTTGGAACTATGTTTTTTACCGCAAGGACGACCATTGCGAATGGACGTGATTGAAAGAATTGAGACCTTTCGACTCCTCATTGCTGTAACTGTATTGACATGTCAAACAGATCGGCAGCGCGCAGACACACTAAATGATTGGATCGTACTGGCTATTGAAACGAAAACTGCTTTAGGCAATCTGTATGGATTTTCAGCTATAATGTTCGGACTGTGTATGCCTCAGGTGGAATGTTTAGAGAACGCTTGGAATATTCTGAGAAGAATTTACACTGATAACGCATTTATGTTTGAAGCCAAGCTACGACCTAGTTTCAAAAGTATGAACGAGGGGACTAATCCTTTACCTCCGAATACGACTACCCCATACATACTCCCTCCAGTTCTATGCTTCCATTTGTTTGATGGCGATGGCGGTTCGTTGATTCAACAGGACGACACGTTTCCAGGAAGTTTGATGAACAGTATTGAATTCGATTTCAATGCGACTGCCGCGCATCTCGAAGCCGCCCGACAATTTCCTAGTCAAATAGATATGTTCAAACGGAACTCTAGGACTGTCGTACAAGAAATGTCTTCTTTGGGACCCACTTTAGATCCTAGATTATTGGAACTTTTCCGGACCGAGTTTCATATTAATTTTTTATGGGGTGAAAGAGGAGCTCTCACAACTCCGAATCAAAGATTCGCGAGGCTCACCGACATCCTGACTGCGATGGCCAACAAGCTGGCCAGCCAACCATCTGGAGTTGATGATATTGTGTAA
Protein
MDSCAMSTSGLLEWEFSLPADQIISHGWYHGALSRTAAESLLQKDREFLVRDSSSQPDNYVLSCRSNGQHLHFVIQRIVVHPETVYERYQYQFEDEAYDTVADLITSYVGSGKPISAASGARIQYPANRMMPLTNYIQGDDINSVISPVGDGALYGNSYSLYSHFAAKPGMQLRVPFKKQRSHSLTPIDIGQHVAQGKSASADGVILNQTNKHTKTLSGDSNSSSGTWDTNLPTSPPAKPARYDGPKADDRRLELQRIYQVSGSDSGNGSGDSTQSSAHGDPNKSRIDSDYNLITPTNKQQFDYDLTEAKLLQSDNLDYVVESRINLGSFQSMIIPTGLTKPLESETLHAIKLLLRTSGPRILAIHLTKVDLYFLFDDAIQIEGLDKTASGLELCFLPQGRPLRMDVIERIETFRLLIAVTVLTCQTDRQRADTLNDWIVLAIETKTALGNLYGFSAIMFGLCMPQVECLENAWNILRRIYTDNAFMFEAKLRPSFKSMNEGTNPLPPNTTTPYILPPVLCFHLFDGDGGSLIQQDDTFPGSLMNSIEFDFNATAAHLEAARQFPSQIDMFKRNSRTVVQEMSSLGPTLDPRLLELFRTEFHINFLWGERGALTTPNQRFARLTDILTAMANKLASQPSGVDDIV

Summary

Uniprot
H9JRV9   A0A2A4JJ62   A0A2H1WE48   A0A194QVK0   A0A0L7KSV0   A0A194PES7   + More
A0A212EKH9   A0A1Y1MWI1   A0A139W8F6   N6SY62   A0A139W8F0   U4UM87   A0A1B0D5K6   A0A131Y4H2   A0A2P6KUZ1   T1K4U8   A0A0T6BFV2  
Pubmed
19121390    26354079    26227816    22118469    28004739    18362917    + More
19820115    23537049   
EMBL
BABH01017048    NWSH01001311    PCG71758.1    ODYU01007984    SOQ51226.1    KQ461108    + More
KPJ08995.1    JTDY01006028    KOB66353.1    KQ459605    KPI91866.1    AGBW02014274    OWR41991.1    GEZM01018816    GEZM01018815    JAV90024.1    KQ973384    KXZ75552.1    APGK01052432    APGK01052433    APGK01052434    KB741212    ENN72724.1    KXZ75550.1    KB632279    ERL91276.1    AJVK01025389    AJVK01025390    AJVK01025391    GEFM01002516    JAP73280.1    MWRG01004922    PRD30132.1    CAEY01001580    LJIG01000711    KRT86229.1   
Proteomes
UP000005204    UP000218220    UP000053240    UP000037510    UP000053268    UP000007151    + More
UP000007266    UP000019118    UP000030742    UP000092462    UP000015104   
PRIDE
H9JRV9   
Pfam
PF00017   SH2        + More
PF00617   RasGEF
PF00536   SAM_1
Interpro
IPR036964   RASGEF_cat_dom_sf        + More
IPR000980   SH2       
IPR023578   Ras_GEF_dom_sf       
IPR036860   SH2_dom_sf       
IPR001895   RASGEF_cat_dom       
IPR001660   SAM       
IPR013761   SAM/pointed_sf       
SUPFAM
SSF48366   SSF48366        + More
SSF55550   SSF55550       
SSF47769   SSF47769       
Gene 3D
1.10.840.10     3.30.505.10     1.10.150.50    
ProteinModelPortal
H9JRV9   A0A2A4JJ62   A0A2H1WE48   A0A194QVK0   A0A0L7KSV0   A0A194PES7   + More
A0A212EKH9   A0A1Y1MWI1   A0A139W8F6   N6SY62   A0A139W8F0   U4UM87   A0A1B0D5K6   A0A131Y4H2   A0A2P6KUZ1   T1K4U8   A0A0T6BFV2  
PDB
3T6G     E-value=2.95583e-39,     Score=409

Ontologies

KEGG
101741990    no KO assigned | (RefSeq) SH2 domain-containing protein 3C
GO
GO:0005085   GO:0007264   GO:0033138   GO:0005515   GO:0008270   GO:0005524   GO:0005488   GO:0003677   GO:0003707   GO:0007169   GO:0016021  

Topology

Length:
645
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0732399999999999
Exp number, first 60 AAs:
0.00039
Total prob of N-in:
0.00154
outside
1  -  645
 
 

Population Genetic Test Statistics

Pi
18.364809
Theta
20.24075
Tajima's D
-0.988302
CLR
0.056754
CSRT
0.132993350332483
Interpretation
Uncertain
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