Silkworm Genome Informatics Database

Gene

KWMTBOMO00523

Pre Gene Modal

BGIBMGA012272

Annotation

PREDICTED:_uncharacterized_protein_LOC106130482_[Amyelois_transitella]

Location

Bomo_Chr1(-):15271607-15276929 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.624

CDS

ATGGATAATCCACTAATGGCACAAGAAGTTCGAGAGGAATTGAGCGGCCATGTAGATTGGGAAACCGAAAGTCAGAATACTCCAGTTTGTTTACCCGCTGGAGATTTGGCAGGATCGCGTTTGTCGAAAACGTACGCATTATTACAAATGCTTTCCGAAGATTTAGAGGAGAAAGTTTCGTTGGCCGATGAAGCGTACAATCTTTACCAAAATGTTAAGTTAGATCCTACAGACGAGGCAACACTGGTGGTGTGTTCTCATTTTTTAACTTTAAAATTAGCGGAAGTGTGGACAGAAACGAGTCTACGAATCCCTAAATTAATTCCATATGACAATGAGCTACTGCAAGAATTTCTACACATTGGCAAAGGCTGGTCTAAAGAGATTAAAACACAACAAGAATGTGTGTTAGAAAGTTTCCGTAAAAAGGATCGCGAAGAAGAACGTTCGCTTTACGAGTTTCTCGGCCGTGTTCGATTGAATATTGCATTGGACGCGCTGCACGAAGTACGTTGCGTCGCGCGTTCCGCGGACCGGAACGCACTTGTGCACGCGATGATACACGACGCAGTACGGGCACATCACCGATGTTGTTTGAATCGTAAAACGCTGAACAGCACTATATTACGTACTTACAAGCCAATGCTTGATGATCAGAACCAAACAGGCCACAACATTAGAGTAGTCAGCATCAATCCCAAGGATAAGAAGCTTATAAGCAACTTATCTTGCACATCGGGAACTGTCATCTACGATCCACACGAATGA

Protein

MDNPLMAQEVREELSGHVDWETESQNTPVCLPAGDLAGSRLSKTYALLQMLSEDLEEKVSLADEAYNLYQNVKLDPTDEATLVVCSHFLTLKLAEVWTETSLRIPKLIPYDNELLQEFLHIGKGWSKEIKTQQECVLESFRKKDREEERSLYEFLGRVRLNIALDALHEVRCVARSADRNALVHAMIHDAVRAHHRCCLNRKTLNSTILRTYKPMLDDQNQTGHNIRVVSINPKDKKLISNLSCTSGTVIYDPHE

Uniprot

H9JRW2 A0A2A4JXI0 A0A2H1W5J1 A0A194QUJ9 A0A194PF06 A0A212EKK1 + More
A0A1B6EFI0 E0VIU4 A0A088AIJ3 A0A2A3ELH4 A0A226E350 F4W7D2 A0A2M9VGX1 A0A0F0FJ38 A0A1H1F7K7 A0A380T3V7

Pubmed

19121390 26354079 22118469 20566863 21719571

EMBL

BABH01017037 BABH01017038 NWSH01000394 PCG76717.1 ODYU01006344 SOQ48112.1 + More
KQ461108 KPJ08999.1 KQ459605 KPI91862.1 AGBW02014274 OWR41995.1 GEDC01000610 JAS36688.1 DS235206 EEB13300.1 KZ288222 PBC32046.1 LNIX01000007 OXA51341.1 GL887844 EGI69805.1 NWCB01000011 PJY94537.1 JYOF01000001 KJK20420.1 FNKV01000001 SDQ96406.1 UIDD01000010 SUQ64919.1

Proteomes

UP000005204 UP000218220 UP000053240 UP000053268 UP000007151 UP000009046 + More
UP000005203 UP000242457 UP000198287 UP000007755 UP000232158 UP000033639 UP000199430 UP000255177

PRIDE

H9JRW2

Pfam

PF00440 TetR_N + More
PF14246 TetR_C_7

Interpro

IPR016024   ARM-type_fold        + More
IPR036271   Tet_transcr_reg_TetR-rel_C_sf
IPR009057   Homeobox-like_sf
IPR039536   TetR_C_Proteobacteria
IPR001647   HTH_TetR

SUPFAM

SSF48371   SSF48371        + More
SSF48498   SSF48498
SSF46689   SSF46689

ProteinModelPortal

H9JRW2 A0A2A4JXI0 A0A2H1W5J1 A0A194QUJ9 A0A194PF06 A0A212EKK1 + More
A0A1B6EFI0 E0VIU4 A0A088AIJ3 A0A2A3ELH4 A0A226E350 F4W7D2 A0A2M9VGX1 A0A0F0FJ38 A0A1H1F7K7 A0A380T3V7

KEGG

101745636 no KO assigned | (RefSeq) uncharacterized LOC101745636

GO

GO:0031514 GO:0003677

Length:

255

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00094

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02721

outside

1 - 255

Pi

21.813903

Theta

29.818517

Tajima's D

-1.100473

CLR

0.035978

CSRT

0.11734413279336

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics