Silkworm Genome Informatics Database

Gene

KWMTBOMO00518

Pre Gene Modal

BGIBMGA012276

Annotation

PREDICTED:_forkhead_box_protein_F1-A-like_[Bombyx_mori]

Location

Bomo_Chr1(-):15183003-15184119 View in EpiBrowser

Transcription factor

Fork_head

Location in the cell

Nuclear Reliability : 3.531

CDS

ATGAAGACTGAGGACCAAACCACAGAGGAGGCGGCGCGCCGCCCGCCTGCAACGCGCCGCCAAGAGAAACCACCCTTCTCCTACATAGCCCTTATAGTCATGGCGATCCGACATTCGCCTAATAAACGACTCACGCTCAGCGAAATCTACGCTTTTCTTCAGCAGCAGTTCCCCTTCTTTCGTAGCTCTTACCAGGGCTGGAAGAACTCTGTGAGACACAATCTGAGCCTGAATGAATGCTTTGTCAAATTGCCGAAAGGCTTGGGGCGGCCCGGAAAGGGTCACTATTGGACCATCGATCCTTCCTCCGAGTTTATGTTCGAGGAAGGTTCGTTTAGAAGACGTCCGCGCGGCTTTCGTCGTAAATGTCAAGCGTTAAAGCCACAATTTGGAAGTGGCGGTTATTTGTGCGGCGGCGGGATGCCCACGCTGCCGCCGTCACAGCCCACCGGCTATGAGCTTGCGGGCAGCAGCAGTTCCGGAGCGAGCAGTGGCCCAGCTATAGATTACGGTGCATGTGCGTATTCACACGCAGGCTCTACAAGCCAACAATTGGGCTACGGCAGTGAATACTGTACGTATGGTACAATGAGTGAGCGGGAGTGGCCTCTAGCCTATGGTGCCGTGGAGCCTGGATACCGGCCGCCGCCAACTTCACCTCCACCTCCTCATCACGATTTGCCTGACATCATACCGAATTATCAATATGCTGTCGCCAATGAGCACGGTAAGTTTTTGAGCTTCACTTTACTCAAACATCTATGTCCAATCTTAATAAACCAATGA

Protein

MKTEDQTTEEAARRPPATRRQEKPPFSYIALIVMAIRHSPNKRLTLSEIYAFLQQQFPFFRSSYQGWKNSVRHNLSLNECFVKLPKGLGRPGKGHYWTIDPSSEFMFEEGSFRRRPRGFRRKCQALKPQFGSGGYLCGGGMPTLPPSQPTGYELAGSSSSGASSGPAIDYGACAYSHAGSTSQQLGYGSEYCTYGTMSEREWPLAYGAVEPGYRPPPTSPPPPHHDLPDIIPNYQYAVANEHGKFLSFTLLKHLCPILINQ

Uniprot

H9JRW6 A0A2A4JC46 A0A2A4JD30 A0A194PFM6 A0A194QVN8 A0A212ENY8 + More
A0A1W4W8S7 D6WIB5

Pubmed

19121390 26354079 22118469 18362917 19820115

EMBL

BABH01017026 NWSH01001921 PCG69667.1 PCG69666.1 KQ459605 KPI91828.1 + More
KQ461108 KPJ09030.1 AGBW02013565 OWR43210.1 KQ971321 EFA00010.2

Proteomes

UP000005204 UP000218220 UP000053268 UP000053240 UP000007151 UP000192223 + More
UP000007266

PRIDE

H9JRW6

Pfam

PF00250 Forkhead

Interpro

IPR018122   TF_fork_head_CS_1        + More
IPR036390   WH_DNA-bd_sf
IPR036388   WH-like_DNA-bd_sf
IPR001766   Fork_head_dom
IPR030456   TF_fork_head_CS_2

SUPFAM

SSF46785 SSF46785

Gene 3D

1.10.10.10

CDD

cd00059 FH

ProteinModelPortal

H9JRW6 A0A2A4JC46 A0A2A4JD30 A0A194PFM6 A0A194QVN8 A0A212ENY8 + More
A0A1W4W8S7 D6WIB5

PDB

1D5V E-value=2.02785e-24, Score=276

KEGG

101741693 K09399 forkhead box protein F | (RefSeq) forkhead box protein F1-A-like

GO

GO:0003700 GO:0005634 GO:0043565 GO:0006355 GO:0008270 GO:0005524 GO:0005488 GO:0003677 GO:0003707 GO:0007169 GO:0016021

Subcellular location

Nucleus

Length:

261

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0990800000000002

Exp number, first 60 AAs:

0.0781800000000001

Total prob of N-in:

0.15730

outside

1 - 261

Pi

19.048021

Theta

15.653186

Tajima's D

0.931032

CLR

0.021906

CSRT

0.651267436628169

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics