SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00506
Pre Gene Modal
BGIBMGA012316
Annotation
PREDICTED:_uncharacterized_protein_LOC101740840_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 2.261
 

Sequence

CDS
ATGATACCGAAGCTGAACAGGAATGCGATCTTAGTGGGGAAAGTCCACTCCTGCTGTCTTGTCTGTGGCAATTACTTCCCCACTGAGAAGGATGCTAACAGACATATTTCGAAAAAAGGCCACAAGAAGAATTTGGAAGCTAACGGCTTCGTGGAAGAATTTATAAATGACCACATTAGGGAGGTCAAAAACGGATTCTTCTGTGAATACTGTAACAAGTACATATCGGGGCCCACCAAAATAAGGCTCCATATTTTGGAAAACACGCATATCAATAATAAGGGCATCCGAAACCTGGAAAGAGTGGGAAATAATATAGTTGCTTTCAAAAATGTGACTATCGCCAAAGCAGCTTGGCATGGAATCGTTGGACATACCTGCTTGATCTGCAATATTAAATTTGGAGATATGGAGATTCACATTTCTACTAAGGAGCATCTCTTTAAATTAGTGCAAACTGAAGTGAAGTTTGCAACTCATAAAGGACTCTACAGGACGATGAAGGAAAACTCTGTTCATTGCTTGACGTGCAATGAAGTTATTAAAACCGCTACTCAAATATTTGTGTCACTCCACTTTTCCCATCCTAAGCACAAACAAAAGTATCAGCAATTAGAACGTAGAGATGCTGAACCTAACGTGCGAGTTGAATCACCAGTTTTACAGCTGGATAAAACTGGTGACGAAGATACATCAGATGATGGCAACCAGGAAGGTGAAGGACAATATCTGGATGTGGCCCAGGGCTATTCCTACGAGGAGCCATTGCTTGTTTGCGATTCGAAAGATTCACAGGAGCATGTAGTAAAAAGGGAGCCTCTGCATCAATTCGTCAATACCATTTTCGTGATTGAACATTATTCGGCAGCTAACAAAGACGTCGTCATTAACAGGAGAATTGTTGTGAATGTATTCAGCTTTTATTTGGTAACGAACACGGACACTTTGAAATGTCAAGCTTGCGAGTTCGAATTAACGTTTGATCAAATTGACGCCCACAAGGCTACTGTGAGACACGAAGCTGCGATGAAGGAAATCCCAGTTATTGTGATAGACTCTGTTGAAAACGAATTCATCAGAGAGGTACGTCCAGAGGAGTACCACTGCGGCTTCTGCAATATTATTATACCGGGCTTGGACGCGATCGTAGAGCACTTGAAGACACTCGTCCACAAGAAAGCCAAGAACAGTGCTTCGTGGCGTCTACAAAGACATCTTCTGAGGAAGAGGCTTTCTGAGTTCAGCCTAAATGACTAA
Protein
MIPKLNRNAILVGKVHSCCLVCGNYFPTEKDANRHISKKGHKKNLEANGFVEEFINDHIREVKNGFFCEYCNKYISGPTKIRLHILENTHINNKGIRNLERVGNNIVAFKNVTIAKAAWHGIVGHTCLICNIKFGDMEIHISTKEHLFKLVQTEVKFATHKGLYRTMKENSVHCLTCNEVIKTATQIFVSLHFSHPKHKQKYQQLERRDAEPNVRVESPVLQLDKTGDEDTSDDGNQEGEGQYLDVAQGYSYEEPLLVCDSKDSQEHVVKREPLHQFVNTIFVIEHYSAANKDVVINRRIVVNVFSFYLVTNTDTLKCQACEFELTFDQIDAHKATVRHEAAMKEIPVIVIDSVENEFIREVRPEEYHCGFCNIIIPGLDAIVEHLKTLVHKKAKNSASWRLQRHLLRKRLSEFSLND

Summary

Pfam
PF06220   zf-U1        + More
PF12756   zf-C2H2_2
Interpro
IPR013087   Znf_C2H2_type        + More
IPR036236   Znf_C2H2_sf       
IPR013085   U1-CZ_Znf_C2H2       
IPR041661   ZN622/Rei1/Reh1_Znf-C2H2       
IPR003604   Matrin/U1-like-C_Znf_C2H2       
SUPFAM
SSF57667   SSF57667       

Ontologies

Topology

Length:
418
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.11045
Exp number, first 60 AAs:
0.02685
Total prob of N-in:
0.01415
outside
1  -  418
 
 

Population Genetic Test Statistics

Pi
3.014036
Theta
18.90522
Tajima's D
-0.446507
CLR
0.019814
CSRT
0.259387030648468
Interpretation
Uncertain
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