Silkworm Genome Informatics Database

Gene

KWMTBOMO00506

Pre Gene Modal

BGIBMGA012316

Annotation

PREDICTED:_uncharacterized_protein_LOC101740840_[Bombyx_mori]

Location

Bomo_Chr1(+):14434592-14439837 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.261

CDS

ATGATACCGAAGCTGAACAGGAATGCGATCTTAGTGGGGAAAGTCCACTCCTGCTGTCTTGTCTGTGGCAATTACTTCCCCACTGAGAAGGATGCTAACAGACATATTTCGAAAAAAGGCCACAAGAAGAATTTGGAAGCTAACGGCTTCGTGGAAGAATTTATAAATGACCACATTAGGGAGGTCAAAAACGGATTCTTCTGTGAATACTGTAACAAGTACATATCGGGGCCCACCAAAATAAGGCTCCATATTTTGGAAAACACGCATATCAATAATAAGGGCATCCGAAACCTGGAAAGAGTGGGAAATAATATAGTTGCTTTCAAAAATGTGACTATCGCCAAAGCAGCTTGGCATGGAATCGTTGGACATACCTGCTTGATCTGCAATATTAAATTTGGAGATATGGAGATTCACATTTCTACTAAGGAGCATCTCTTTAAATTAGTGCAAACTGAAGTGAAGTTTGCAACTCATAAAGGACTCTACAGGACGATGAAGGAAAACTCTGTTCATTGCTTGACGTGCAATGAAGTTATTAAAACCGCTACTCAAATATTTGTGTCACTCCACTTTTCCCATCCTAAGCACAAACAAAAGTATCAGCAATTAGAACGTAGAGATGCTGAACCTAACGTGCGAGTTGAATCACCAGTTTTACAGCTGGATAAAACTGGTGACGAAGATACATCAGATGATGGCAACCAGGAAGGTGAAGGACAATATCTGGATGTGGCCCAGGGCTATTCCTACGAGGAGCCATTGCTTGTTTGCGATTCGAAAGATTCACAGGAGCATGTAGTAAAAAGGGAGCCTCTGCATCAATTCGTCAATACCATTTTCGTGATTGAACATTATTCGGCAGCTAACAAAGACGTCGTCATTAACAGGAGAATTGTTGTGAATGTATTCAGCTTTTATTTGGTAACGAACACGGACACTTTGAAATGTCAAGCTTGCGAGTTCGAATTAACGTTTGATCAAATTGACGCCCACAAGGCTACTGTGAGACACGAAGCTGCGATGAAGGAAATCCCAGTTATTGTGATAGACTCTGTTGAAAACGAATTCATCAGAGAGGTACGTCCAGAGGAGTACCACTGCGGCTTCTGCAATATTATTATACCGGGCTTGGACGCGATCGTAGAGCACTTGAAGACACTCGTCCACAAGAAAGCCAAGAACAGTGCTTCGTGGCGTCTACAAAGACATCTTCTGAGGAAGAGGCTTTCTGAGTTCAGCCTAAATGACTAA

Protein

MIPKLNRNAILVGKVHSCCLVCGNYFPTEKDANRHISKKGHKKNLEANGFVEEFINDHIREVKNGFFCEYCNKYISGPTKIRLHILENTHINNKGIRNLERVGNNIVAFKNVTIAKAAWHGIVGHTCLICNIKFGDMEIHISTKEHLFKLVQTEVKFATHKGLYRTMKENSVHCLTCNEVIKTATQIFVSLHFSHPKHKQKYQQLERRDAEPNVRVESPVLQLDKTGDEDTSDDGNQEGEGQYLDVAQGYSYEEPLLVCDSKDSQEHVVKREPLHQFVNTIFVIEHYSAANKDVVINRRIVVNVFSFYLVTNTDTLKCQACEFELTFDQIDAHKATVRHEAAMKEIPVIVIDSVENEFIREVRPEEYHCGFCNIIIPGLDAIVEHLKTLVHKKAKNSASWRLQRHLLRKRLSEFSLND

Uniprot

H9JS06 H9JS04 H9JS05

Pubmed

19121390

EMBL

BABH01016975 BABH01016973 BABH01016974

Proteomes

UP000005204

PRIDE

H9JS06 H9JS04 H9JS05

Pfam

PF06220 zf-U1 + More
PF12756 zf-C2H2_2

Interpro

IPR013087   Znf_C2H2_type        + More
IPR036236   Znf_C2H2_sf
IPR013085   U1-CZ_Znf_C2H2
IPR041661   ZN622/Rei1/Reh1_Znf-C2H2
IPR003604   Matrin/U1-like-C_Znf_C2H2

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

H9JS06 H9JS04 H9JS05

KEGG

101744484 no KO assigned | (RefSeq) uncharacterized LOC101744484

GO

GO:0003676 GO:0008270 GO:0046872 GO:0004634 GO:0006096 GO:0005488 GO:0003677 GO:0003707 GO:0007169 GO:0016021

Length:

418

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.11045

Exp number, first 60 AAs:

0.02685

Total prob of N-in:

0.01415

outside

1 - 418

Pi

3.014036

Theta

18.90522

Tajima's D

-0.446507

CLR

0.019814

CSRT

0.259387030648468

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics