Silkworm Genome Informatics Database

Gene

KWMTBOMO00502

Pre Gene Modal

BGIBMGA012314

Annotation

PREDICTED:_uncharacterized_protein_LOC101740840_[Bombyx_mori]

Location

Bomo_Chr1(+):14392022-14395844 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.668

CDS

ATGACTTCGAATTTTAGCCAGAACGCAATTTTATTTGGGACTTTGCAGTCGTACTGCCTTGTCTGCGAATGCTACCTCGCAGGCAAACGAGACACTATACGGCACATTTCAAAGGATGACCATAAAACAAATCTGGAAGCTAGCATTTTCGTGGAGGAATTTACAACTGATCAAATAAGAAAGGTTAAAAAGGGATTCTTCTGTGAGCTGTGCAATAAATACTTTTCAACCATAATACAAGGACGGCTCCACGTATCGGATGGTGAACACGTCCGTAATAAGGGCGTCCAACTATTCCAGCGGATGGAAAATGGTATGGTCAGCTACAAAAACATACCTATCACGAAAGAAGCATGGAATGGGATCATTGAAAACAAGTGCATAATCTGCGACACAGAATTTGATTCTCTGGAGAGTCACATAACTAGCCAAGAACATCTTTTTCAGTTGGTACAGGTAGATGTGGAGTTTGGTGCTTACAACGGACTCTACAGAGTGTTGGAAAACGCGTTTCAATGCTTAACATGCAACGAAGTTTATACACCAGTAAATACGAATGTTGAAGCAAGTGCAACAACGCATTTCTTAGAGTCTAAACATAAAAGGATTTATGACAAATTAGCGAAAGCTGCAAACGAACAGTTACAAGTTAACGACAAACGTACGAATAAAGGAAAATCACGTGGTTTAAATGCGAAGAATGCTTTAAGCCGCCAGCTGTCATCTGATTCGTCCCTTGCAAATGAAGATGACAACGACGACGGAATCAAGATGCTGTCCATCGAGAAATTCATCAATGATTTTTATGCGATCAAGGGCACATCTCTGGGCGGCAAAGATGTTGTCATAAACACAAAAATAATTGTGGGGCTCTCAAGCTTTTATTGCATAACGAAATTGGATACTTGGAAATGTGAGATCTGTGACCTCACTTTAAACTCTGATGATATTGACGCCCATAGACTCTCTCAGAAACATGAAGCTGCAATGAGTGACACTCCAGTCATATTAATACAGGCTGCGGGAAATGAATTTATCAGAGAGGTACGTCCCGAAGTTTACCACTGTGGCTTTTGCAACATCGTCGAACAAGGCATGGACACCATCTTAAAGCACTTGAATACCGCAGATCACAAGCAAAGCAGGATATCTGCAGCTTGGCGTCTCCACGAGCACATGCTGGTTAAGAAATTGGAATAA

Protein

MTSNFSQNAILFGTLQSYCLVCECYLAGKRDTIRHISKDDHKTNLEASIFVEEFTTDQIRKVKKGFFCELCNKYFSTIIQGRLHVSDGEHVRNKGVQLFQRMENGMVSYKNIPITKEAWNGIIENKCIICDTEFDSLESHITSQEHLFQLVQVDVEFGAYNGLYRVLENAFQCLTCNEVYTPVNTNVEASATTHFLESKHKRIYDKLAKAANEQLQVNDKRTNKGKSRGLNAKNALSRQLSSDSSLANEDDNDDGIKMLSIEKFINDFYAIKGTSLGGKDVVINTKIIVGLSSFYCITKLDTWKCEICDLTLNSDDIDAHRLSQKHEAAMSDTPVILIQAAGNEFIREVRPEVYHCGFCNIVEQGMDTILKHLNTADHKQSRISAAWRLHEHMLVKKLE

Uniprot

H9JS04 H9JS05 H9JS06

Pubmed

19121390

EMBL

BABH01016973 BABH01016974 BABH01016975

Proteomes

UP000005204

PRIDE

H9JS04 H9JS05 H9JS06

Pfam

PF06220 zf-U1 + More
PF12756 zf-C2H2_2

Interpro

IPR013087   Znf_C2H2_type        + More
IPR036236   Znf_C2H2_sf
IPR013085   U1-CZ_Znf_C2H2
IPR041661   ZN622/Rei1/Reh1_Znf-C2H2
IPR003604   Matrin/U1-like-C_Znf_C2H2

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

H9JS04 H9JS05 H9JS06

PDB

6AHD E-value=0.0615577, Score=85

KEGG

101744006 no KO assigned | (RefSeq) uncharacterized LOC101744006

GO

GO:0003676 GO:0008270 GO:0046872 GO:0008152 GO:0016616 GO:0004634 GO:0006096 GO:0005488 GO:0003677 GO:0003707 GO:0007169 GO:0016021

Length:

399

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.37696

Exp number, first 60 AAs:

0.36142

Total prob of N-in:

0.01968

outside

1 - 399

Pi

1.359463

Theta

3.837863

Tajima's D

-2.541116

CLR

25.673861

CSRT

4.99975001249937e-05

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree