Gene

KWMTBOMO00501

Pre Gene Modal

BGIBMGA012313

Annotation

PREDICTED:_SNF4/AMP-activated_protein_kinase_gamma_subunit_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr1(+):14337752-14385768      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 4.129

CDS

ATGCACGGCCTGTCACACTTTTTACACAAACACTCTCGGGATTCTACACCGCCTTCAGAGAAAGAGGAGCGGGCTGACAGTTGGTATTCTTCATTGAGTTCGAATGATTCGCGTGGAGCTATACCTCAGGATTCCCAGGAAAGAGCTATTCCTATAAACCAAAGAGGGTCATATGCACAAAGAAGCTTAAGAGGCTCTACAGGCGCACCTTTTGAATTTGCATCTAGTCCACGAGATCGTTATCCAAATTTTGCCAGCTATTTCCGAGATGTAATGGAAACTCGCACTTCATCGTCTTCGCATCATTATCACACACACCATGCAGACTCAAGGAGACGTCACGAGGGCGATCGCTACCAAACCAGCGTCAACACATATCAAACGCCACGTAATGAGTACCGCCAATTCGTCTCCCCTCTATTTAATGACGCAATGGACGATATACAAGAAAACGAGTACAGTAAATGTGAAAGGTACGGTGAAATAACCAACAACAAAGTTAGTCACACACCGTACAAGAGCCGTTTCGATAATAAAAATTTTGCTCAAAAATTAACGGAGAGTGTTAGTAGCTCTTCGAAAACCACTTCGAGTGAGAGGCGAGGGTCAGGATCGAGTGGAAGTGGACATCGTCATAAGCACCATTCGATCCAAGAACTTATCCGAACATTCGGGAAAAAAGTGGGTAGTTGGAGGCACGAATCAGGCGATAGTCGCAGAGGATCATGTGCGGCTCCCACTACCAGTGCTGAACAAACTCGGACTATGGAGAACGATGAATTTCGTTCACGCTCTAAATCTCTAGACGCTGATCACTTACATAAGGTTATTCAAAGACCTTTGCTAGAAGACTGTGGAGCGACATACCAAATATTCGATGCTATTTTAAAAGAAGGAGCACATCTACGCAGGGCTGCCTCGCAACAAGCTGAAAAACGCAGGTCGTCTCTCGGCAACGTGCCTGTTAACAGACACAGAGCTTCAGATGCATTCTTGGATCCTCATCATGCCGCCATTCTCTTCCGCGATTCCAGAGGGCTTCCCGTCGCTGACCCGTTCCTGGAGAAAGTTAGCCTTTCGGATTTAGAGGAAGATGAGTCGCAAATATTCGTCAAGTTCTTCAAGTTTCACAAGTGCTACGATCTGATACCAACCTCGGCGAAGCTGGTCGTGTTCGACACGCAACTCCTGGTCAAGAAGGCTTTCTTCGCCCTTGTTTACAATGGCGTGCGAGCCGCCCCGCTGTGGGACTCGAACCAGCAGCAGTTCGTTGGTATGCTGACTATAACGGACTTCATCAAGATACTACAGATGTACTACACGAGCCCCGACGTCAAAATGGAAGAGCTCGAGGAACACCGCCTCGAGACGTGGCGCCGCGTGTTGAAAGGTTCAGTGATGCCGCTCGTATCGATCGGTCCTGATTCTTCACTGTTCGAAGCCATAAGGATGTTGATCACGAACCGCATCCATCGTCTACCGGTCATCGATCCCGACACCGGCAACGTGCTCTACATACTGACGCACAAGAGGATACTGAGATTCCTCTTTTTGTATATAAACGAATTACCAAAGCCGTCGTACCTGAAGAGTAAGATTCGCGATCTCCGCATCGGCACCCTAAGCGACATCGAGACCGCCACCGAGGAGACCTCGATCATCGAAGCCCTGAAGAAATTCGTGAACAGGCGCGTTTCGGCGTTGCCCCTGATCGATCCCGAAGGACGTTTGAAAGACATCTACGCCAAGTTTGACGTCATTAACCTGGCAGCCGAAAAGACGTATAATAATCTGGACGTTACATTGAAAACGGCAAACGAACATCGGAACGAGTGGTTCGAGGGCGTTCAGAAATGTAAACTCGACGAAACACTCTTCGATGTTATGGAAAGAATCGTTCGGGCCGAGGTACATCGTCTAGTTGTCGTCGATGATGACGATAAAGTCATCGGAATTATATCTCTCTCGGATCTGCTAATGTATCTTGTCCTACGTCCTACCGGCGAGTGTGGCGTCACCAGCTTACGCAACGAACACGCGCCCATAGAAGAAAAGGACGAGAACTTGAATCCCGAAGACGTAGCAGAATCCGGAGATGATAAATCAACAGTTTCAAAAGAACAAGACGATAGCGAAGAACGCACTCAGTGCCAAGAGTAA

Protein

MHGLSHFLHKHSRDSTPPSEKEERADSWYSSLSSNDSRGAIPQDSQERAIPINQRGSYAQRSLRGSTGAPFEFASSPRDRYPNFASYFRDVMETRTSSSSHHYHTHHADSRRRHEGDRYQTSVNTYQTPRNEYRQFVSPLFNDAMDDIQENEYSKCERYGEITNNKVSHTPYKSRFDNKNFAQKLTESVSSSSKTTSSERRGSGSSGSGHRHKHHSIQELIRTFGKKVGSWRHESGDSRRGSCAAPTTSAEQTRTMENDEFRSRSKSLDADHLHKVIQRPLLEDCGATYQIFDAILKEGAHLRRAASQQAEKRRSSLGNVPVNRHRASDAFLDPHHAAILFRDSRGLPVADPFLEKVSLSDLEEDESQIFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGVRAAPLWDSNQQQFVGMLTITDFIKILQMYYTSPDVKMEELEEHRLETWRRVLKGSVMPLVSIGPDSSLFEAIRMLITNRIHRLPVIDPDTGNVLYILTHKRILRFLFLYINELPKPSYLKSKIRDLRIGTLSDIETATEETSIIEALKKFVNRRVSALPLIDPEGRLKDIYAKFDVINLAAEKTYNNLDVTLKTANEHRNEWFEGVQKCKLDETLFDVMERIVRAEVHRLVVVDDDDKVIGIISLSDLLMYLVLRPTGECGVTSLRNEHAPIEEKDENLNPEDVAESGDDKSTVSKEQDDSEERTQCQE

Uniprot

B2LU33   A0A1E1WEJ7   A0A212EI97   A0A034V6R6   A0A0A1WR26   B4PQC3   + More
A0A1W4VKX3   Q8SXT8   Q8I0B2   F5HMQ4   A0A3L8DAB9  

Pubmed

22118469    25348373    25830018    17994087    17550304    10731132    + More
12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    12456644    12364791    14747013    17210077    30249741   

EMBL

EU583499    ACC62889.1    GDQN01010358    GDQN01005763    JAT80696.1    JAT85291.1    + More
AGBW02014676    OWR41233.1    GAKP01021502    GAKP01021498    GAKP01021496    GAKP01021494    JAC37450.1    GBXI01017028    GBXI01013429    GBXI01004849    JAC97263.1    JAD00863.1    JAD09443.1    CM000160    EDW96232.1    AY084138    AE014297    AAL89876.1    AAN13852.1    AAN13853.1    ABI31188.1    ABI31189.1    ACZ94965.1    ACZ94966.1    AY166753    AY166756    AY166757    AY166758    AAN85715.1    AAAB01008987    EGK97577.1    QOIP01000011    RLU16858.1   

Proteomes

UP000007151    UP000002282    UP000192221    UP000000803    UP000007062    UP000279307    + More

PRIDE

B2LU33    Q8I0B2   

Pfam

PF00571   CBS

Interpro

IPR039170   AMPKG-2        + More
IPR000644   CBS_dom       

ProteinModelPortal

B2LU33   A0A1E1WEJ7   A0A212EI97   A0A034V6R6   A0A0A1WR26   B4PQC3   + More
A0A1W4VKX3   Q8SXT8   Q8I0B2   F5HMQ4   A0A3L8DAB9  

PDB

4REW     E-value=3.56861e-99,     Score=926

KEGG

100145904    K07200 5'-AMP-activated protein kinase, regulatory gamma subunit | (RefSeq) Snf4agamma; SNF4/AMP-act

PATHWAY

04068    FoxO signaling pathway - Bombyx mori (domestic silkworm)
04213    Longevity regulating pathway - multiple species - Bombyx mori (domestic silkworm)

GO

GO:0071900   GO:0016301   GO:0032559   GO:0009267   GO:0045787   GO:0006914   GO:0006629   GO:0030730   GO:0042632   GO:0019901   GO:0005737   GO:0042595   GO:0005634  

PANTHER

PTHR13780:SF122  

Length:

719

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00472

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00005

outside

1  -  719

 

 

Pi

19.936463

Theta

21.084482

Tajima's D

-1.132586

CLR

0.045526

CSRT

0.110344482775861

Interpretation

Uncertain