Silkworm Genome Informatics Database

Gene

KWMTBOMO00474

Pre Gene Modal

BGIBMGA012300

Annotation

uncharacterized_protein_LOC101739895_[Bombyx_mori]

Location

Bomo_Chr1(+):13766271-13782814 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.973

CDS

ATGACATCGGCAAAAGTAGCAACGCAGCTCATGAATAACAACAACGCACAAAATGGCCGCCAGCAGCCCATATCGCGACTAACAGCGCCCCCAACGGACCCTCGAATGAAGATAACCGCGTCATCATCGGAACAAAAAAAGAAACCGAAAGAACTTTGTCGCAACTTCCTCTGGGGAACATGCACTAAAGGAACTGAGTGTATTCACCTTCACAAACTAGACCTAAAAGTTTTGAAAGAAACCGTAAAGTTTTGCCGCGATTTTCAAAACAAAGTTACTTGCAGTAGACCTGGTTGTACATTTCTCCATGTTTCTGATGAGGAGCAAAAGCTATTTGAAAAAGAAGGCAAAATACCTCGTTTGCTAGCTGAAAGATATGCAGCTCTAAAAGATTCACCTACAGCAAAAATGGTGGTGGAGAAATCTCAAAAAACAGGTTCTATGTTTAACGTTGGAGATTATTTAACAAAACCACCGCCACCGCCACCACCCGTAGCATCAGTGGCAGGGCCCTCAATACCAGTATCGCATCCATCTTGTTCTTCTCTGCAGTCAATGCTGGCATTACCACCACCACCACCACCTCCTCTTCCTCCACTACCGAAGGCTCCACTCCCTCAGCCAACAAAGGCGGTAACAATAACAACAACATCCACAACAGCAGTGGCTTCCACATCAACCCAAAAGTTGACACCAGCAAAACCAGTTCCAAATACTACAGTGAGTACAACAGGCCTACATATACTAAATCAGCCTCCTCCACCAGGCTTTGATGCAAGTAAACCTCCACCACCATTACCTCAGATGAATGGTGCTATAAAACGGCCTGCATTCGATTCTTGCAAAGCTGGACAAAGAAAGATGGCAAAACTGGATGACGCGAATTCTTTAGAAAGCGACTGCAATAACTGTGTGCAGAGGGAACTCAGGATTGAACTTTACAAACAAGAAATGAAAGACCTTGAAAAAGAACAAGAAAACAAGTCAAAGATGCTGAAGATGAAGATGGTGGAGCATGAGCGTGCAGTTGCAGTGCTGAAAGCAAACATTGACCCTGAATTTTATCAATGGTTCGATGATTACATTGAGGGTGTAACAACATCAACAAAAGCTGTCCTGGTAGAGCTATTGAAGCATGTGGTGTCAAAAGGGAAATTAAAAAATTTAAAACTAACACAATCGCAGTATCCATTAGAAGATGCAGTTTTGACTACTTTAACTAGAAGAAGATCTTCAAATCTAAATGATTCAACAAGATTGCTAAAATTGCTGGGATTGCTAGCTAGTAAAGAAAGAAAACCAGAAGCGCGTAATACAGAAATAAATACTGAAATACGAATAAACGCATCGAGCGTTGTGAAAAATACTGCATTGATGAACAGCCCCGTAAATGGCTTTGTGAATCGACAAAAAGAGGTAACAATTGAAGCTAATCAGAAGAAAATTCCGATTGCTGTTAATAGTAATCACGTGACGACTACGCTCCCGCAAGCAAAAGTAGCAACTCCTCCTATGCAGCCGAATGGGATAGTGCCATATCAGCTATCGGGAGTATCGTCTGCCAGCCCTTTTTACGGCAGTACCTGTCCACCTGCGACCAGGATTGCTACAGCTCCCACGCAGTCGACTTCAAAGCAACCGGTGAGAATGAAGATGAACATGCCGAACATGCCAAACATACCAAACATGCATCAAAACGGACCCGGTTTTAATTTCCAATATAACATGGTGATGCGGTATCCACAACCACCACCGCCGTTTCAATAG

Protein

MTSAKVATQLMNNNNAQNGRQQPISRLTAPPTDPRMKITASSSEQKKKPKELCRNFLWGTCTKGTECIHLHKLDLKVLKETVKFCRDFQNKVTCSRPGCTFLHVSDEEQKLFEKEGKIPRLLAERYAALKDSPTAKMVVEKSQKTGSMFNVGDYLTKPPPPPPPVASVAGPSIPVSHPSCSSLQSMLALPPPPPPPLPPLPKAPLPQPTKAVTITTTSTTAVASTSTQKLTPAKPVPNTTVSTTGLHILNQPPPPGFDASKPPPPLPQMNGAIKRPAFDSCKAGQRKMAKLDDANSLESDCNNCVQRELRIELYKQEMKDLEKEQENKSKMLKMKMVEHERAVAVLKANIDPEFYQWFDDYIEGVTTSTKAVLVELLKHVVSKGKLKNLKLTQSQYPLEDAVLTTLTRRRSSNLNDSTRLLKLLGLLASKERKPEARNTEINTEIRINASSVVKNTALMNSPVNGFVNRQKEVTIEANQKKIPIAVNSNHVTTTLPQAKVATPPMQPNGIVPYQLSGVSSASPFYGSTCPPATRIATAPTQSTSKQPVRMKMNMPNMPNIPNMHQNGPGFNFQYNMVMRYPQPPPPFQ

Uniprot

A0A024FSH6

Pubmed

24828047

EMBL

AB840788 BAO79517.1

Interpro

IPR036855 Znf_CCCH_sf + More
IPR000571 Znf_CCCH

SUPFAM

SSF90229 SSF90229

ProteinModelPortal

A0A024FSH6

PDB

2RHK E-value=0.00470626, Score=96

KEGG

101739895 no KO assigned | (RefSeq) Masc; uncharacterized LOC101739895

GO

GO:0046872 GO:0006098 GO:0016491 GO:0003676 GO:0030126 GO:0005488 GO:0003677 GO:0003707 GO:0007169 GO:0016021

Length:

588

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00094

Exp number, first 60 AAs:

6e-05

Total prob of N-in:

0.00156

outside

1 - 588

Pi

4.471121

Theta

15.370717

Tajima's D

-1.621688

CLR

0.006162

CSRT

0.0424478776061197

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics