Gene

KWMTBOMO00465

Annotation

PREDICTED:_TBC1_domain_family_member_13_[Amyelois_transitella]

Location

Bomo_Chr1(-):13548379-13557310      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.73

CDS

ATGAGTCTCCATAAAGCTAGGATAAAAGCCTTTGAAGAAGTACTTGATCAAGATGTTATTGATATGCAGCAGCTCCAGAAGCTAGCCTTCAATGGAATACCTGATGATAAAGGACTGAGATCATTAGTTTGGAAAATCCTACTGCATTATTTACCCCAAGAAAAGAACGCTAGAGAAACAACGCTAATTAAGAAACGTCAGCTTTATAAACAGTTTATAGAAGAAATAATTGTATCGCCCGGAGGGCCAACTGACCATCCGTTAAACATGAGCCCCGACAGCTCTTGGAGTACTTACTTCAAAGATAACGAGGTACTGTTGCAAATCGACAAGGACGTGCGAAGACTCTGCCCCGATATATCATTCTTTCAATCTGCTACTGAATTTCCTTGTCCTGAGGTCGTAAACAGCAATGGCATAAAACGATTGCACAAACGTGTCGAGCAATCCGTCCTCAAATACGCCACATTGGAGAGAAGGGGTCTCGGTGTTGCCAAGCTTAGCAACGAAATCAAACGCGCCGAGAACATCACAAGCGGCGATTACGCCCCACTGAACGAAGGCTGCGAGGCTCACTGGGAGGTGGTGGAACGTATGCTGTTTCTGTATGCGAAGCTGAACCCGGGACAGGGCTACGTTCAAGGAATGAACGAAATAATAGGACCCATCTATCATACCTTCGCTATTGACGCCGATAAGGAGTTTCGACAGCACGCCGAAGCCGACTGCTTCTTCTGCTTCACGAACCTAATGGCCGAGATACGTGACTTCTTCATACGTACCCTCGACGAGGCGGAAAGCGGAATCAACTACATGATGTGCAAACTCAACGAATTTCTGAAGCGCCACGACCCGGACGTTTGGACTTTATTGGAGAAGCAGGAACTGCGCCCTCAGTACTACAGCTTCAGATGGCTGACGCTCTTACTGTCCCAAGAGTTCTCTCTACCCGACGTCGAAAGAATTTGGGACACCCTATTCGCTGATTCTCAACGTTTCGATTTCCTCATAAACATATGCTGCGCGATGATTTTGTTGGTTCGGGATAATTTACTAGGCGGCGATTTCGCGTCGAATGTAAAATTGCTACAAAACTTTCCGCCTATGGACGTGTCGTTGATACTAAATAAAGCAGCTACACTCGGCAACACGTAA

Protein

MSLHKARIKAFEEVLDQDVIDMQQLQKLAFNGIPDDKGLRSLVWKILLHYLPQEKNARETTLIKKRQLYKQFIEEIIVSPGGPTDHPLNMSPDSSWSTYFKDNEVLLQIDKDVRRLCPDISFFQSATEFPCPEVVNSNGIKRLHKRVEQSVLKYATLERRGLGVAKLSNEIKRAENITSGDYAPLNEGCEAHWEVVERMLFLYAKLNPGQGYVQGMNEIIGPIYHTFAIDADKEFRQHAEADCFFCFTNLMAEIRDFFIRTLDEAESGINYMMCKLNEFLKRHDPDVWTLLEKQELRPQYYSFRWLTLLLSQEFSLPDVERIWDTLFADSQRFDFLINICCAMILLVRDNLLGGDFASNVKLLQNFPPMDVSLILNKAATLGNT

Uniprot

A0A212EQL2   A0A194QN51   A0A194PEV1   A0A2H1VF63   A0A2W1BQN4   H9JUW2   + More
A0A1E1WR41   A0A2J7QK97   E9J167   D6WI52   A0A088AC46   A0A026W3G7   A0A1Y1NBB1   E2A9E6   A0A158N8Y1   A0A0L7RJZ0   A0A151ISD7   A0A1B6DHC2   A0A151WNP5   N6UI94   A0A151HZN5   F4W9H0   A0A195C982   A0A224XR45   A0A1B6LT36   A0A1W4WGH6   A0A0P4VSA1   A0A232F8M1   K7J4B9   E0V9S3   A0A1B6HGD4   E2C3W1   Q0IG78   T1I605   A0A182G8R9   A0A195F5Q5   A0A0C9RXS4   A0A182GPG3   A0A2A3EH27   A0A1Q3G1X5   A0A1Q3G205   A0A1S4F3K3   A0A0A9YDC1   A0A336M0R4   A0A1A9X358   A0A1I8PJY2   A0A0L0CKV4   A0A1B0GLY5   A0A0M9A702   B4PFZ6   A0A067QW59   A0A0R1DV69   A0A1I8MR39   B3NBQ7   Q9VSM8   A0A1W4US91   A0A3B0JVK6   A0A182WKW7   Q95TT8   A0A182SC41   A0A0J9RRI7   A0A0Q5UI42   A0A182RS09   A0A0J9RRY4   A0A1W4UEU7   A0A182JHM1   A0A0J9RRM4   A0A182UBU9   Q7Q6P6   A0A182HWK0   A0A1B0EZ32   B3M682   A0A182XMP3   A0A182YPJ6   B4N3P4   A0A182MEF8   A0A1L8DVU5   A0A182L329   A0A1W4WGE9   B4HK05   A0A1A9V2W8   A0A310S9N5   A0A182Q402   W8C6T1   U5EW07   A0A182NH51   A0A1A9XKA8   A0A182K386   B4H9I6   A0A182URC0   A0A1B0B471   A0A034W9S6   W5JGN1   A0A0K8V668   A0A1A9ZFW4   B5DRN7   B4LEL4   E9FUD3   B4KZ63   D3TL41  

Pubmed

22118469    26354079    28756777    19121390    21282665    18362917    + More
19820115    24508170    30249741    28004739    20798317    21347285    23537049    21719571    27129103    28648823    20075255    20566863    17510324    26483478    25401762    26823975    26108605    17994087    17550304    24845553    25315136    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    22936249    12364791    14747013    17210077    25244985    20966253    24495485    25348373    20920257    23761445    15632085    21292972    20353571   

EMBL

AGBW02013269    OWR43744.1    KQ461196    KPJ06405.1    KQ459605    KPI91891.1    + More
ODYU01002248    SOQ39478.1    KZ149977    PZC75905.1    BABH01039780    GDQN01001559    JAT89495.1    NEVH01013275    PNF29006.1    GL767586    EFZ13409.1    KQ971334    EFA01059.1    KK107453    QOIP01000004    EZA50578.1    RLU23589.1    GEZM01010199    JAV94150.1    GL437804    EFN69943.1    ADTU01008907    KQ414574    KOC71267.1    KQ981075    KYN09782.1    GEDC01012224    JAS25074.1    KQ982907    KYQ49411.1    APGK01019133    KB740092    KB632429    ENN81455.1    ERL95437.1    KQ976714    KYM76943.1    GL888030    EGI69145.1    KQ978068    KYM97382.1    GFTR01005945    JAW10481.1    GEBQ01013129    JAT26848.1    GDKW01001790    JAI54805.1    NNAY01000718    OXU26818.1    AAZX01006389    DS234996    EEB10129.1    GECU01033984    JAS73722.1    GL452364    EFN77347.1    CH477261    EAT45679.1    ACPB03000757    JXUM01009565    KQ560286    KXJ83268.1    KQ981810    KYN35404.1    GBYB01014025    GBYB01014027    JAG83792.1    JAG83794.1    JXUM01078413    KQ563065    KXJ74544.1    KZ288258    PBC30519.1    GFDL01001230    JAV33815.1    GFDL01001213    JAV33832.1    GBHO01013998    GDHC01004973    JAG29606.1    JAQ13656.1    UFQT01000224    SSX22017.1    JRES01000247    KNC32998.1    AJVK01020104    AJVK01020105    AJVK01020106    KQ435735    KOX77149.1    CM000159    EDW93140.1    KK853300    KDR08764.1    KRK00969.1    CH954178    EDV50653.1    AE014296    BT044356    AAF50388.1    ACH92421.1    OUUW01000002    SPP77396.1    AY058542    AAL13771.1    CM002912    KMY98431.1    KQS43426.1    KMY98432.1    KMY98433.1    AAAB01008960    EAA11714.4    APCN01001496    AJWK01021800    CH902618    EDV39702.1    CH964095    EDW79249.1    AXCM01013222    GFDF01003534    JAV10550.1    CH480815    EDW40741.1    KQ766819    OAD53558.1    AXCN02000346    GAMC01000947    JAC05609.1    GANO01001636    JAB58235.1    CH479229    EDW36462.1    JXJN01008181    GAKP01008419    JAC50533.1    ADMH02001558    ETN62070.1    GDHF01017885    JAI34429.1    CH379070    EDY74272.2    CH940647    EDW69099.1    GL732525    EFX88939.1    CH933809    EDW17860.1    EZ422139    ADD18336.1   

Proteomes

UP000007151    UP000053240    UP000053268    UP000005204    UP000235965    UP000007266    + More
UP000005203    UP000053097    UP000279307    UP000000311    UP000005205    UP000053825    UP000078492    UP000075809    UP000019118    UP000030742    UP000078540    UP000007755    UP000078542    UP000192223    UP000215335    UP000002358    UP000009046    UP000008237    UP000008820    UP000015103    UP000069940    UP000249989    UP000078541    UP000242457    UP000091820    UP000095300    UP000037069    UP000092462    UP000053105    UP000002282    UP000027135    UP000095301    UP000008711    UP000000803    UP000192221    UP000268350    UP000075920    UP000075901    UP000075900    UP000075880    UP000075902    UP000007062    UP000075840    UP000092461    UP000007801    UP000076407    UP000076408    UP000007798    UP000075883    UP000075882    UP000001292    UP000078200    UP000075886    UP000075884    UP000092443    UP000075881    UP000008744    UP000075903    UP000092460    UP000000673    UP000092445    UP000001819    UP000008792    UP000000305    UP000009192   

PRIDE

H9JUW2    Q9VSM8    Q95TT8   

Pfam

PF00566   RabGAP-TBC

Interpro

IPR000195   Rab-GTPase-TBC_dom        + More
IPR035969   Rab-GTPase_TBC_sf       

SUPFAM

SSF47923   SSF47923       

ProteinModelPortal

A0A212EQL2   A0A194QN51   A0A194PEV1   A0A2H1VF63   A0A2W1BQN4   H9JUW2   + More
A0A1E1WR41   A0A2J7QK97   E9J167   D6WI52   A0A088AC46   A0A026W3G7   A0A1Y1NBB1   E2A9E6   A0A158N8Y1   A0A0L7RJZ0   A0A151ISD7   A0A1B6DHC2   A0A151WNP5   N6UI94   A0A151HZN5   F4W9H0   A0A195C982   A0A224XR45   A0A1B6LT36   A0A1W4WGH6   A0A0P4VSA1   A0A232F8M1   K7J4B9   E0V9S3   A0A1B6HGD4   E2C3W1   Q0IG78   T1I605   A0A182G8R9   A0A195F5Q5   A0A0C9RXS4   A0A182GPG3   A0A2A3EH27   A0A1Q3G1X5   A0A1Q3G205   A0A1S4F3K3   A0A0A9YDC1   A0A336M0R4   A0A1A9X358   A0A1I8PJY2   A0A0L0CKV4   A0A1B0GLY5   A0A0M9A702   B4PFZ6   A0A067QW59   A0A0R1DV69   A0A1I8MR39   B3NBQ7   Q9VSM8   A0A1W4US91   A0A3B0JVK6   A0A182WKW7   Q95TT8   A0A182SC41   A0A0J9RRI7   A0A0Q5UI42   A0A182RS09   A0A0J9RRY4   A0A1W4UEU7   A0A182JHM1   A0A0J9RRM4   A0A182UBU9   Q7Q6P6   A0A182HWK0   A0A1B0EZ32   B3M682   A0A182XMP3   A0A182YPJ6   B4N3P4   A0A182MEF8   A0A1L8DVU5   A0A182L329   A0A1W4WGE9   B4HK05   A0A1A9V2W8   A0A310S9N5   A0A182Q402   W8C6T1   U5EW07   A0A182NH51   A0A1A9XKA8   A0A182K386   B4H9I6   A0A182URC0   A0A1B0B471   A0A034W9S6   W5JGN1   A0A0K8V668   A0A1A9ZFW4   B5DRN7   B4LEL4   E9FUD3   B4KZ63   D3TL41  

PDB

2QFZ     E-value=5.47968e-18,     Score=223

KEGG

101736095    no KO assigned | (RefSeq) TBC1 domain family member 13

GO

GO:0016021   GO:0090630   GO:0005623   GO:0005096   GO:0017137   GO:0006886   GO:0006451   GO:0051020   GO:0061770   GO:0005737   GO:0043087  

Length:

384

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.15612

Exp number, first 60 AAs:

0

Total prob of N-in:

0.03009

outside

1  -  384

 

 

Pi

16.934868

Theta

17.401807

Tajima's D

-0.993638

CLR

0.043277

CSRT

0.137593120343983

Interpretation

Uncertain