Gene

KWMTBOMO00460  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA013317

Annotation

PREDICTED:_carnitine_O-palmitoyltransferase_1?_liver_isoform_[Papilio_machaon]

Location

Bomo_Chr1(+):13418801-13439491      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 2.765

CDS

ATGGCAGAAGCTCATTCGGCTGTGGCATTTTCCTTCGCAATAACTCACGATGGCTGGGATGTGAATTTCGACCGTGAAGTCCTCTACCTAGTTTGGGAATCGGGTGTTCGATCATGGAAGAAACGTCTTGCTCGTTTTAGGAACAATGTACTGAATGGCGTGTACCCAGGTCATCTGCAGTCACTTTATGTGCTGTGGACACTACTTGTAGCTGCCCATTTCAGTAACTTCAACATACCATTTGGCTTAGTTGATAAAATGATAACAATAATGCCAAGCAATTCAACATGGGCCCAGGTAGTAGCGTGCTTCTTAGTAGCGCTCACCATGTGGTTTATCGTTATATTTTTGATGAGATATCTGCTGAAATTACTGCTTATGTACAAGGGTTGGATGTATGAGTCACGTGGTCCCGGTGCTAAAATATCGTTAAAGACCAAACTGTGGGTGAGCGTCGTGAAAGTACTATCCGGATGGAACAAACCAAAGTTGTACAGTTTTCAAGGCTCTTTGCCCAGACTCCCTCTGCCGGCTGTTGAAGATACTATGAATAGGTACCTACTCAGTGTCCGACCATTACTTGACAATGATAATTACAAAAGAGTGGAAAAATTAGCTGTAGAATTCAAAACAAAAATTGCGGTTAAACTACAGAGATATCTGATACTCAAATCTTGGTGGTCTAGCAACTACGTATCGGACTGGTGGGAGGAGTATGTTTATTTAAAAGGTCGCTCACCCCTGATGGTCAATTCCAATTTCTATGGAACAGATGCTATTTTATTGAGACCTACACAGATACAAGCGGCCCGTGCGGGCGTCATCATCCACCTCTGCTTAAAGTTCCGTAGGCTTATCGATAGTCAAGAATTGGAACCCATAATGCTACAAAACATGGTTCCCCTGTGCTCCTGGCAATACGAGCGCCTTTTCAACACGGTACGCGCGCCTGGCATCGAAACCGATAAACTTGTGCACTATCAAGACTCCTCGCACATCGTGGTTTATCATAAAGGCAAATATTTTAAGGTGTTGGTTTACTTGAGGGGTCGTCTGTTAAAACCGGCAGAAATTCAAGTGCAAATACAACAGATACTGGACGATAAATCGGAGCCGGCGATCGGTGAGGAGAAACTGGCCGCACTAACCGCCGGAGAGCGAACGCATTGGGCCCAAATCCGACAGACGATGTTCAATCGCGGCCACAACCGTACATCCCTGCATTGCATTGAGCGCGCTGCCTTCACGGTCAGCTTGGACGATATGGAATATGGCTACGACGAGACCGATCCAAAGAAGCTGGATGAGTTTGGTCACGTGCTACTGCACGGTAAAGGATATGATCGTTGGTTCGACAAATCCTTCAACTTATGTTTTAGTACTAATGGCTTCGTTGGATTCAATGCGGAACACAGTTGGGCCGATGCGCCTGTTATGGGTCATCTTTGGGAATACGTTATTTGGTCTGAACTTGAAATAGGGTACCAGCCGGATGGCAACACCAAGGGCACTATTGTTACTAATCCGCCAGCGCCAATACGTCTCCAGTGGGAGTTAAATAAAGAAGAAATATTAAGCGCCATTGATATTTCGTATAGCGTCGCTCATAAACTCCTCAATGATGTAGACCTAAGGATTCTGATGTACACCAAATATGGAAAAGGTTTCATGAAGAAATGCCGCGTATCTCCGGACGCATTCATTCAGCTGATTCTCCAACTGTCTTACTACCGCGACGCAAGCCGTTTCTGTCTCACGTATGAGGCGTCTATGACCAGATTGTTCCGCGAAGGTCGCACGGAGACAGTAAGATCCTGCACCATTGAAAGCACCGAGTGGGTCCGCGCCATGGAAAATCCTAACAGTAGTATCGAAGAGCGCATGGCGTTATTCATAAAAGCCAGTAACAGACATCAGCTCGGCTACCAAGACGCTATGGCGGGTCGGGGCATCGACCGCCACCTTTTCTGTTTGTATGTCGTCGCTAAATATTTGGAACTCGAGTCGCCCTTCTTGCAAGAAGTCTTCAATGAACCATGGCGTCTGTCCACCAGCCAAACACCCTACGGTCAAACCAGCCTCCTGGATCTGAAAAAGTATCCTAAATGTGTAAGCGCGGGTGGTGGGTTCGGTCCCGTCGCGGATGACGGCTATGGTGTCTCGTACATCATTGTCGGTGAAGATACTATATTTTTCCACGTCTCAAGCAAGAAGAGCTGCCCAATAACCAGTTCAACGAACTTCGTGAAGCAAATCGAGAAATCCCTTCACGACGTTCAAACATTGTTTAATGATTACAACAAACTGAAGAAAACCAACAAACCGATAACAGACTAA

Protein

MAEAHSAVAFSFAITHDGWDVNFDREVLYLVWESGVRSWKKRLARFRNNVLNGVYPGHLQSLYVLWTLLVAAHFSNFNIPFGLVDKMITIMPSNSTWAQVVACFLVALTMWFIVIFLMRYLLKLLLMYKGWMYESRGPGAKISLKTKLWVSVVKVLSGWNKPKLYSFQGSLPRLPLPAVEDTMNRYLLSVRPLLDNDNYKRVEKLAVEFKTKIAVKLQRYLILKSWWSSNYVSDWWEEYVYLKGRSPLMVNSNFYGTDAILLRPTQIQAARAGVIIHLCLKFRRLIDSQELEPIMLQNMVPLCSWQYERLFNTVRAPGIETDKLVHYQDSSHIVVYHKGKYFKVLVYLRGRLLKPAEIQVQIQQILDDKSEPAIGEEKLAALTAGERTHWAQIRQTMFNRGHNRTSLHCIERAAFTVSLDDMEYGYDETDPKKLDEFGHVLLHGKGYDRWFDKSFNLCFSTNGFVGFNAEHSWADAPVMGHLWEYVIWSELEIGYQPDGNTKGTIVTNPPAPIRLQWELNKEEILSAIDISYSVAHKLLNDVDLRILMYTKYGKGFMKKCRVSPDAFIQLILQLSYYRDASRFCLTYEASMTRLFREGRTETVRSCTIESTEWVRAMENPNSSIEERMALFIKASNRHQLGYQDAMAGRGIDRHLFCLYVVAKYLELESPFLQEVFNEPWRLSTSQTPYGQTSLLDLKKYPKCVSAGGGFGPVADDGYGVSYIIVGEDTIFFHVSSKKSCPITSSTNFVKQIEKSLHDVQTLFNDYNKLKKTNKPITD

Uniprot

H9JUV4   A0A2W1BRW1   A0A2A4ISR3   A0A2H1W6J1   A0A1E1WMU0   A0A194QLF8   + More
A0A194PGR8   A0A212EKH5   K7IW67   V5GW75   A0A1B6L5C7   D6WI25   A0A084VPZ2   A0A182K3P3   A0A1B6CIN1   A0A182QLA7   A0A2M3Z0Q8   A0A182UMD3   A0A067RA00   A0A2M4BEF0   A0A2J7RKA6   A0A182XB12   A0A2M4A0T4   A0A1S4H375   A0A182KJM4   A0A182I0K5   A0A182R7R4   A0A182N8N8   E2A6C2   A0A336M8Q5   A0A336M930   Q7Q0U0   A0A182M9R9   T1E1Y6   A0A1B6DCM8   A0A182FMY5   A0A0K8TTA0   A0A232FDJ0   A0A1I8M899   A0A026WET5   A0A182U978   A0A2J7RK93   A0A336KRP5   A0A336M4U0   A0A1Y1JVJ2   A0A1Q3FF05   A0A182YIL3   A0A336KMI8   A0A1Q3FEQ2   A0A1Q3FEP3   A0A336KLM4   A0A1Q3FEQ5   W5J7N7   A0A336KSM9   Q179Z5   A0A195CTF6   A0A336KKA7   A0A1Y1JSD4   A0A182IW25   T1PKH8   A0A023EW28   A0A151JZG1   A0A151XFQ3   A0A195BJC2   A0A158NFD0   B0WED0   F4WUJ2   A0A1I8NSM4   A0A034VPK8   A0A195E8G3   A0A0Q9W5H9   A0A023F564   A0A0L0BTS0   A0A2A3E9G3   A0A1L8EE34   B3MI43   Q7JQH9   A0A336KPU3   A0A336KLU3   D3TRL5   A0A1A9V5B4   B4P871   A0A0Q9XGI9   Q28XI5   A0A034VKD7   A0A1L8DYB6   A0A1B0AHR2   A0A0C9RVR9   A0A1L8DYE7   A0A0Q5VN39   A0A0J9R9P8   A0A1W4X321   A0A1I8NSM7   A0A0V0G650   A0A1A9WJ04   A0A0P9C0X8   A0A1W4VP57   A0A1W4X490   A0A146KJV7   A0A0K8U212  

Pubmed

19121390    28756777    26354079    22118469    20075255    18362917    + More
19820115    24438588    24845553    12364791    20966253    20798317    14747013    17210077    24330624    26369729    28648823    25315136    24508170    30249741    28004739    25244985    20920257    23761445    17510324    24945155    21347285    21719571    25348373    17994087    25474469    26108605    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    20353571    17550304    15632085    18057021    22936249    26823975   

EMBL

BABH01039784    KZ149977    PZC75897.1    NWSH01008073    PCG62709.1    ODYU01006633    + More
SOQ48647.1    GDQN01002742    JAT88312.1    KQ461196    KPJ06398.1    KQ459605    KPI91899.1    AGBW02014274    OWR41999.1    GALX01003993    JAB64473.1    GEBQ01021080    JAT18897.1    KQ971334    EEZ99701.1    ATLV01015089    KE525002    KFB40036.1    GEDC01026748    GEDC01024028    JAS10550.1    JAS13270.1    AXCN02001857    GGFM01001366    MBW22117.1    KK852598    KDR20535.1    GGFJ01002288    MBW51429.1    NEVH01002981    PNF41260.1    GGFK01001096    MBW34417.1    AAAB01008980    APCN01005216    GL437123    EFN71007.1    UFQS01000675    UFQT01000675    SSX06074.1    SSX26430.1    UFQS01000558    UFQT01000558    SSX04931.1    SSX25293.1    EAA13810.3    AXCM01000376    GALA01001244    JAA93608.1    GEDC01013847    JAS23451.1    GDAI01000227    JAI17376.1    NNAY01000414    OXU28580.1    KK107260    QOIP01000001    EZA54166.1    RLU26627.1    PNF41258.1    SSX06075.1    SSX26431.1    SSX04930.1    SSX25292.1    GEZM01101960    JAV52161.1    GFDL01008911    JAV26134.1    SSX06076.1    SSX26432.1    GFDL01009019    JAV26026.1    GFDL01009018    JAV26027.1    SSX04932.1    SSX25294.1    GFDL01009015    JAV26030.1    ADMH02001931    ETN60467.1    SSX06073.1    SSX26429.1    CH477342    EAT43076.1    KQ977279    KYN03981.1    SSX04929.1    SSX25291.1    GEZM01101959    JAV52162.1    KA645126    KA649209    AFP63838.1    GAPW01000261    JAC13337.1    KQ981410    KYN41921.1    KQ982182    KYQ59187.1    KQ976464    KYM84546.1    ADTU01014263    DS231907    EDS45490.1    GL888365    EGI62157.1    GAKP01015225    GAKP01015222    JAC43730.1    KQ979440    KYN21505.1    CH940648    KRF80200.1    GBBI01002503    JAC16209.1    JRES01001351    KNC23442.1    KZ288323    PBC28114.1    GFDG01001873    JAV16926.1    CH902619    EDV38053.2    AE013599    BT010044    AAF58785.2    AAF58786.1    AAQ22513.1    SSX06072.1    SSX26428.1    SSX04928.1    SSX25290.1    CCAG010017066    EZ424067    ADD20343.1    CM000158    EDW90118.2    KRJ98945.1    CH933808    KRG04324.1    CM000071    EAL26331.3    GAKP01015223    GAKP01015221    JAC43731.1    GFDF01002643    JAV11441.1    GBYB01011796    JAG81563.1    GFDF01002630    JAV11454.1    CH954179    KQS62940.1    KQS62941.1    CM002911    KMY92798.1    KMY92800.1    GECL01002606    JAP03518.1    KPU77237.1    KPU77238.1    GDHC01021881    JAP96747.1    GDHF01031944    JAI20370.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000053268    UP000007151    UP000002358    + More
UP000007266    UP000030765    UP000075881    UP000075886    UP000075903    UP000027135    UP000235965    UP000076407    UP000075882    UP000075840    UP000075900    UP000075884    UP000000311    UP000007062    UP000075883    UP000069272    UP000215335    UP000095301    UP000053097    UP000279307    UP000075902    UP000076408    UP000000673    UP000008820    UP000078542    UP000075880    UP000078541    UP000075809    UP000078540    UP000005205    UP000002320    UP000007755    UP000095300    UP000078492    UP000008792    UP000037069    UP000242457    UP000007801    UP000000803    UP000092444    UP000078200    UP000002282    UP000009192    UP000001819    UP000092445    UP000008711    UP000192223    UP000091820    UP000192221   

PRIDE

H9JUV4    Q7JQH9   

Pfam

PF16484   CPT_N        + More
PF00755   Carn_acyltransf

Interpro

IPR039551   Cho/carn_acyl_trans        + More
IPR042232   Cho/carn_acyl_trans_1       
IPR042231   Cho/carn_acyl_trans_2       
IPR000542   Carn_acyl_trans       
IPR032476   CPT_N       
IPR027417   P-loop_NTPase       

SUPFAM

SSF52540   SSF52540       

Gene 3D

3.30.559.40     3.30.559.70    

ProteinModelPortal

H9JUV4   A0A2W1BRW1   A0A2A4ISR3   A0A2H1W6J1   A0A1E1WMU0   A0A194QLF8   + More
A0A194PGR8   A0A212EKH5   K7IW67   V5GW75   A0A1B6L5C7   D6WI25   A0A084VPZ2   A0A182K3P3   A0A1B6CIN1   A0A182QLA7   A0A2M3Z0Q8   A0A182UMD3   A0A067RA00   A0A2M4BEF0   A0A2J7RKA6   A0A182XB12   A0A2M4A0T4   A0A1S4H375   A0A182KJM4   A0A182I0K5   A0A182R7R4   A0A182N8N8   E2A6C2   A0A336M8Q5   A0A336M930   Q7Q0U0   A0A182M9R9   T1E1Y6   A0A1B6DCM8   A0A182FMY5   A0A0K8TTA0   A0A232FDJ0   A0A1I8M899   A0A026WET5   A0A182U978   A0A2J7RK93   A0A336KRP5   A0A336M4U0   A0A1Y1JVJ2   A0A1Q3FF05   A0A182YIL3   A0A336KMI8   A0A1Q3FEQ2   A0A1Q3FEP3   A0A336KLM4   A0A1Q3FEQ5   W5J7N7   A0A336KSM9   Q179Z5   A0A195CTF6   A0A336KKA7   A0A1Y1JSD4   A0A182IW25   T1PKH8   A0A023EW28   A0A151JZG1   A0A151XFQ3   A0A195BJC2   A0A158NFD0   B0WED0   F4WUJ2   A0A1I8NSM4   A0A034VPK8   A0A195E8G3   A0A0Q9W5H9   A0A023F564   A0A0L0BTS0   A0A2A3E9G3   A0A1L8EE34   B3MI43   Q7JQH9   A0A336KPU3   A0A336KLU3   D3TRL5   A0A1A9V5B4   B4P871   A0A0Q9XGI9   Q28XI5   A0A034VKD7   A0A1L8DYB6   A0A1B0AHR2   A0A0C9RVR9   A0A1L8DYE7   A0A0Q5VN39   A0A0J9R9P8   A0A1W4X321   A0A1I8NSM7   A0A0V0G650   A0A1A9WJ04   A0A0P9C0X8   A0A1W4VP57   A0A1W4X490   A0A146KJV7   A0A0K8U212  

PDB

1XMC     E-value=3.30783e-76,     Score=728

KEGG

101737109    K08765 carnitine O-palmitoyltransferase 1, liver isoform [EC:2.3.1.21] | (RefSeq) carnitine O-palmit

PATHWAY

00071    Fatty acid degradation - Bombyx mori (domestic silkworm)
01212    Fatty acid metabolism - Bombyx mori (domestic silkworm)

GO

GO:0016746   GO:0016021   GO:0009437   GO:0005739   GO:0004095   GO:0006979   GO:0010038   GO:0012505   GO:0042594   GO:0006355   GO:0043565   GO:0003676   GO:0030126   GO:0005488   GO:0003677   GO:0003707   GO:0007169  

PANTHER

PTHR22589  

Length:

778

Number of predicted TMHs:

2

Exp number of AAs in TMHs:

44.7043500000001

Exp number, first 60 AAs:

0.38814

Total prob of N-in:

0.01408

outside

1  -  61

TMhelix

62  -  84

inside

85  -  95

TMhelix

96  -  118

outside

119  -  778

 

 

Pi

14.967614

Theta

18.531631

Tajima's D

-2.232577

CLR

0.072298

CSRT

0.00384980750962452

Interpretation

Uncertain