Silkworm Genome Informatics Database

Gene

KWMTBOMO00458

Pre Gene Modal

BGIBMGA013330

Annotation

transcription_factor_crocodile_[Bombyx_mori]

Location

Bomo_Chr1(-):13388002-13393980 View in EpiBrowser

Transcription factor

Fork_head

Location in the cell

Nuclear Reliability : 3.276

CDS

ATGCATGCTCTTTTCGGTGAACAAAGCCCATATGCGTACCGCGGTGGTGCGGCCGGTGGATATTCAGCCGGCGTCGCACCATACGCTTATGAACAATATCGCTATGGTTATGGAGCCCCGTACCTCCACCCGCATCAGCAGCATGTGGGGGCACCGAAAGACATGGTCAAACCGCCATACTCGTACATAGCCCTTATTGCGATGGCAATACAGAATGCACCAGAGCGGCGCATCACGTTGAATGGTATTTATCAGTTTATCATGGAGCGATTTCCCTATTATAGAGAAAACAAACAAGGATGGCAAAATTCTATAAGACACAACTTAAGCCTCAACGAGTGTTTTGTTAAAGTAGCCAGAGACGATAAAAAACCTGGTAAAGGTAGTTATTGGACATTAGACCCAGATTCGTATAACATGTTCGATAACGGTTCATATCTAAGGCGGCGGCGCCGTTTCAAGAAAAAAGATGCTTTAAAGGAAAAAGAAGAAGCACTTAAGCGACAACAGCAACTTCAACAAGCACAGGAGGCGCTCGCCGCACAAGAAGCGTTATCGGCAGCTGATGCTCTCGGACAGCAACGTGACGTCAAACCTGATGTAAAACCACGGATTTTTGAGTGCCGACCGAAGAGGGAACCCGGCGCAGAATGCACAAGATACGATAAGCCAGTAGATTCGATTGACGAATTCAATGAACCGAGATTGCCGCCGTCTGCGGTGTACTGTTCTCCGCAGCCGTATTCTTTAGCGGCAGAAGATTTTCGTGCAGCCACATCGGGATGGTATACAGCACCCGAGCCTCCGGCCGAGCAACTCCCGCCGGCTTTTCGTGATTTATTTGAACCACCAAGCTGTCAGTTGGCTGGGTTTCGGGGAGGCTCGCCACCGCCGGAAGCTTACCGCGCGTCGCCGCCGCATCACCACTATCGCACGCCGGCGCCGTCTTACTACCACCACCAGGCGTGTGTGGCTGCTGCACCCGCTCCGGCACACAAGTCCTATTGA

Protein

MHALFGEQSPYAYRGGAAGGYSAGVAPYAYEQYRYGYGAPYLHPHQQHVGAPKDMVKPPYSYIALIAMAIQNAPERRITLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNECFVKVARDDKKPGKGSYWTLDPDSYNMFDNGSYLRRRRRFKKKDALKEKEEALKRQQQLQQAQEALAAQEALSAADALGQQRDVKPDVKPRIFECRPKREPGAECTRYDKPVDSIDEFNEPRLPPSAVYCSPQPYSLAAEDFRAATSGWYTAPEPPAEQLPPAFRDLFEPPSCQLAGFRGGSPPPEAYRASPPHHHYRTPAPSYYHHQACVAAAPAPAHKSY

Uniprot

G5EI84 A0A2W1BVV5 A0A2H1WHW0 A0A0L7KL05 A0A194PEW1 A0A194QS78 + More
A0A212EP01 D6WIB6 N6U5A9

Pubmed

19121390 28756777 26227816 26354079 22118469 18362917 + More
19820115 23537049

EMBL

BABH01039786 AB196787 BAL14565.1 KZ149977 PZC75893.1 ODYU01008769 + More
SOQ52655.1 JTDY01009184 KOB64012.1 KQ459605 KPI91901.1 KQ461196 KPJ06396.1 AGBW02013565 OWR43213.1 KQ971321 EFA00009.1 APGK01041938 KB740998 KB630286 KB632332 ENN75831.1 ERL83518.1 ERL92639.1

Proteomes

UP000005204 UP000037510 UP000053268 UP000053240 UP000007151 UP000007266 + More
UP000019118 UP000030742

PRIDE

G5EI84

Pfam

PF00250 Forkhead

Interpro

IPR036388   WH-like_DNA-bd_sf        + More
IPR036390   WH_DNA-bd_sf
IPR018122   TF_fork_head_CS_1
IPR001766   Fork_head_dom
IPR030456   TF_fork_head_CS_2

SUPFAM

SSF46785 SSF46785

Gene 3D

1.10.10.10

CDD

cd00059 FH

ProteinModelPortal

G5EI84 A0A2W1BVV5 A0A2H1WHW0 A0A0L7KL05 A0A194PEW1 A0A194QS78 + More
A0A212EP01 D6WIB6 N6U5A9

PDB

1D5V E-value=3.75888e-45, Score=456

KEGG

100852390 K09396 forkhead box protein C | (RefSeq) croc; transcription factor crocodile

GO

GO:0003700 GO:0043565 GO:0005634 GO:0009653 GO:0000981 GO:0006357 GO:0030154 GO:0006355 GO:0003676 GO:0030126 GO:0005488 GO:0003677 GO:0003707 GO:0007169 GO:0016021

Subcellular location

Nucleus

Length:

335

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.15916

Exp number, first 60 AAs:

0.15489

Total prob of N-in:

0.00906

outside

1 - 335

Pi

1.233504

Theta

6.680537

Tajima's D

-2.470011

CLR

19.107951

CSRT

0.000249987500624969

Interpretation

Possibly Positive selection

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics