SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00457
Annotation
PREDICTED:_uncharacterized_protein_LOC106721395_[Papilio_machaon]
Location in the cell
Nuclear   Reliability : 3.71
 

Sequence

CDS
ATGGTATATAAATACAAGAGGAAGACTAATCAAGCCCAATGGAGTGAGGACAGTATGATGCTTGCAATAGCAGATTGCAATTCTGGCATTCCTGTCAAAACGACCGCAAAAAAGTATGGTCTACCTTACGCCACTCTCTATAGGCATTGGAAAAAAGGTAGTTCGACGGCTCAGCTTGGTCGTTTTCGTAAAGTTTTCAACGATGGTCAAGAGGGAGATCTTCGAACGTATTTGTATGAAATGGATAGTGTTTTTTATGGGCTAACCCGAGAAGATTTTAAAACATTAGTTTTTGAATACGCGAAACGCAATAATGTCACTTATCCGCCTAGTTGGGGCAAAAATAAAAAAGCTGGTGATGATTGGCTAGCAGGATTTATTAGAAGAAATCCACAAATTACACTAAGAATTCCAGAAGCAACCACAATTGGCAGAGTTAAAGGCTTCAATCGTCCTCAAGTAGAAAGGTTCTATAAACTGTTAAGTGAACAAATTGAGAAGTGTCAAATTGATGGTACTAGAATCTATAATATAGATGAAACTGGCATTCAGACCTCGACAAATAAACCACCCAAGGTTCTTTCAGTTAAAGGTAAGAGGCAAGTTGGAGTCATTTCCAGCACTGAACGTGGACAAACTACGACAGTCGTGTGTTGCTGCAACGCTTCTGGATCATTCGTTCCACCGTTTATGATATTTGCACGTAAAAGGATGCAAGATCGCCTTTTGGATGGTTCTCCTCCAGAGACTCGAGGAAGTTGTTCAGCTTCGAGATGGATAAATGGAGAAATATTTTTGGATTGGCTTAAATTTTTCGTCGGCCACGTACGTCCGACAAAAGACAAAAAAGTTATTTTACTTCTGGACAACCATGAAAGCCATAAATACTATCCAGCTTTACAGTACGCAACTGAAAATAATGTCATCATTTTGTCTTTGCCACCGCACACCTCAAACAAACTTCAACCTCTGGACGTGGCTGTATATGGTCCATTTAAAATATTCTTCGAGCAAGAAATCAATAGATTTCAAAAGGCTCATCCAGGTAGGATAATCAACCAATACGATGTAGCCAAACTGTTCAGTCCAGCTTATCTGAAATCTGCTACTCCTAACAATGCTATCAAAGGCTTTCAATCAACCGGTATCTGGCCAACAAATAAAGATATATGGGGAGAAGAAGATTATGCACCATCTTCTATTACAATGACAGACCGTAATACCGCTAACCAACAGGAGACTTTTATAGACTCAAACAGTCAAAATGTTGAAATTACGATTGACATCGAAAAGCCTTCTACATCAGGGCTCCAAAGTCAGTCACTGCAAATTGATGTAGAACCACTGGAACAGATTGAAAGAAAATTTATTGAGAATGTGAATGTAGAAGTTGACGCTGTAGTGGAAAATAGTATCATGGGTATAGTATCAGTGTCCAATATGAATCAAATACATTCTCGAGATACATCGCCTTCAATTTTGGATAAATTACCCGACAAAGATCCCCTTACATGCAATGCTGTTGTAGTAACGGCTGTAGCTGATAATACTCAAAAATTGTCTAAACCACAAGAAGCAATGTCCACTGAAGGTATGAATCAAGGTGCAGATCTGACTCAAGACAGTATAGATATAAAAGAGGGTCAATTTAAAGGCAACGATGATGAAATTATTATGGACCTGGAATCATCTACGGCTCGGGCTTCAGCATATTTCAGTCCTAAAGACATAAGACCGCTTCCGATGCCACGCGTTTCTGTGGGTACACGTAAAAGAAAGGTTCAAAAGTCTGAGGTGTTAACAAGCACGCCGGTGAAGCGAGAACAAAAAGAAAAATTTATAAAAATTAATGTCAAAGCAATGAAAAATATGAATATAGATTTAAATGCTAAACCAAAGACTGCGACAAAGAAAAATACTAAAACGACCAAAAATATAATTGTTAAAGATAAAAGCAGTGATAAGGAAAACGAGGAAGAACAGTGTGTATGCTATTATTGCGGGGAGAACTATATAGAAATAAATAAAAAACCAGTTGAGGATTGGATTCAGTGTGATAAATGTAAGCAATGGAGTCACGAAAAATGCACGGCTTATGGAGGAATAGGCTTATTCTTTTGTGATATCTGCACGGATTAG
Protein
MVYKYKRKTNQAQWSEDSMMLAIADCNSGIPVKTTAKKYGLPYATLYRHWKKGSSTAQLGRFRKVFNDGQEGDLRTYLYEMDSVFYGLTREDFKTLVFEYAKRNNVTYPPSWGKNKKAGDDWLAGFIRRNPQITLRIPEATTIGRVKGFNRPQVERFYKLLSEQIEKCQIDGTRIYNIDETGIQTSTNKPPKVLSVKGKRQVGVISSTERGQTTTVVCCCNASGSFVPPFMIFARKRMQDRLLDGSPPETRGSCSASRWINGEIFLDWLKFFVGHVRPTKDKKVILLLDNHESHKYYPALQYATENNVIILSLPPHTSNKLQPLDVAVYGPFKIFFEQEINRFQKAHPGRIINQYDVAKLFSPAYLKSATPNNAIKGFQSTGIWPTNKDIWGEEDYAPSSITMTDRNTANQQETFIDSNSQNVEITIDIEKPSTSGLQSQSLQIDVEPLEQIERKFIENVNVEVDAVVENSIMGIVSVSNMNQIHSRDTSPSILDKLPDKDPLTCNAVVVTAVADNTQKLSKPQEAMSTEGMNQGADLTQDSIDIKEGQFKGNDDEIIMDLESSTARASAYFSPKDIRPLPMPRVSVGTRKRKVQKSEVLTSTPVKREQKEKFIKINVKAMKNMNIDLNAKPKTATKKNTKTTKNIIVKDKSSDKENEEEQCVCYYCGENYIEINKKPVEDWIQCDKCKQWSHEKCTAYGGIGLFFCDICTD

Summary

Pfam
PF05225   HTH_psq        + More
PF03184   DDE_1
PF03221   HTH_Tnp_Tc5
Interpro
IPR006600   HTH_CenpB_DNA-bd_dom        + More
IPR009057   Homeobox-like_sf       
IPR007889   HTH_Psq       
IPR004875   DDE_SF_endonuclease_dom       
IPR019786   Zinc_finger_PHD-type_CS       
IPR011011   Znf_FYVE_PHD       
IPR013083   Znf_RING/FYVE/PHD       
SUPFAM
SSF46689   SSF46689        + More
SSF57903   SSF57903       
Gene 3D

Ontologies

Topology

Length:
712
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
1.47642
Exp number, first 60 AAs:
0.00226
Total prob of N-in:
0.07843
outside
1  -  712
 
 

Population Genetic Test Statistics

Pi
2.739591
Theta
29.439225
Tajima's D
-1.33499
CLR
0.056116
CSRT
0.0838958052097395
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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