Silkworm Genome Informatics Database

Gene

KWMTBOMO00448

Pre Gene Modal

BGIBMGA002333

Annotation

Copia_protein_[Trachymyrmex_cornetzi]

Location

Bomo_Chr1(-):13231560-13233184 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.999

CDS

ATGGATTCTACAGTTTATGCAGCCAATGGTGAAAAAATGAAAGCACAAGGATCAGGTAAATCAGTACTAGAAACACTAACAAAAGTTGCAGACGGCATAATTATACAAGGACCAAAAGTATTACAAGAACAGTGTAAAATATGTGCTGAAGCAAAACAGTCAAGACTACCATTTAATACAATCAGAACTCGTGCTGAAAGGTACCTACAAATAATACACACAGACATATGTGGTCCCTTCGAAGAAAAGACTCATGATGGATATAGATATGTATTAACAATAATGGACGACTACAGTCATTTTACAAAAATCTATTTACTTAAAAACAAGAGCGATGCAAAAGAAGAAATTAAAAATTATATTGAAGAAACGGAGCGAGAGAAAAATAGTAAAGTATCGACTATAAGATGCGACAACGGAGGTGAATATACAAGTAACGATTTTAAAGCATTTTGTCAACAAAAAGGTATAAAATTAGACTACACAGTGCCCTACTCACCACAATTAAATGGAAAAGTTGAACGCCTAAACCGGACATTATTAGAAAAAACAAGAGCATTACTCTTTGATTCTAAATTGAACAAAGAAATGTGGGGTGAAGCAATATATTGTGCTACTTATATTTTAAACAGACTACCAAGTGATGCCCTGAAAAACAAAACACCATATGAAATGTGGGTTGGAAAAAAGCCTAATATATCTAATATGCAAAAGTTTGGTTCTACTGTCTATGCAAAACAGTTACATCCAAATGTAAAGAAACTGGATCCTAGAAGCAAGAAACTAATAATGATTGGATACACTAATAATGGGTACAGACTGTGGAATGACAAGGAGAGAAAAATAGAGATATCAAGGGACATAGTGATAGTAAAAAGTGAAACTGAACAAAAGAAAGAAAACTATAAGAAAATAAATAATAATAAAAGTGAAAATGATGAAAAAGAGACAGACCAGGAAGAGACAACAGAAAACCAGGAAGAGACTATATACAACCAGGAAGAGACAACAGAAAACCAGGAAAAGACTACAGAAAACCAGGAACAGATTATAGAAAACCAGGAAGAGACAACAGAAGATACCAGAACAGAAGAAAATAAAAATGATGAGATTTTTGAAGATGTAGTATCAGAAACTGAATCAGAAGATACAGAAAGAGAAAGAAACAGACATCATGAAGAAAACGAGAGGCTGTAA

Protein

MDSTVYAANGEKMKAQGSGKSVLETLTKVADGIIIQGPKVLQEQCKICAEAKQSRLPFNTIRTRAERYLQIIHTDICGPFEEKTHDGYRYVLTIMDDYSHFTKIYLLKNKSDAKEEIKNYIEETEREKNSKVSTIRCDNGGEYTSNDFKAFCQQKGIKLDYTVPYSPQLNGKVERLNRTLLEKTRALLFDSKLNKEMWGEAIYCATYILNRLPSDALKNKTPYEMWVGKKPNISNMQKFGSTVYAKQLHPNVKKLDPRSKKLIMIGYTNNGYRLWNDKERKIEISRDIVIVKSETEQKKENYKKINNNKSENDEKETDQEETTENQEETIYNQEETTENQEKTTENQEQIIENQEETTEDTRTEENKNDEIFEDVVSETESEDTERERNRHHEENERL

Uniprot

A0A1W7R6C3 A0A0P6AI73

EMBL

GEHC01000928 JAV46717.1 GDIP01034138 JAM69577.1

Pfam

PF07727   RVT_2        + More
PF00665   rve
PF13976   gag_pre-integrs

Interpro

IPR001584   Integrase_cat-core        + More
IPR012337   RNaseH-like_sf
IPR013103   RVT_2
IPR025724   GAG-pre-integrase_dom
IPR036397   RNaseH_sf
IPR039537   Retrotran_Ty1/copia-like
IPR001878   Znf_CCHC

SUPFAM

SSF53098 SSF53098

Gene 3D

3.30.420.10

ProteinModelPortal

A0A1W7R6C3 A0A0P6AI73

PDB

3DLR E-value=3.16685e-09, Score=148

KEGG

101745397 K19673 tetratricopeptide repeat protein 21B | (RefSeq) tetratricopeptide repeat protein 21B-like

GO

GO:0008270 GO:0003676 GO:0000943 GO:0015074 GO:0006281 GO:0005198 GO:0030126 GO:0005488 GO:0003677 GO:0003707 GO:0007169 GO:0016021

PANTHER

PTHR11439

Length:

398

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00123

Exp number, first 60 AAs:

0.00055

Total prob of N-in:

0.01431

outside

1 - 398

Pi

6.691686

Theta

19.823657

Tajima's D

-2.006698

CLR

0.003603

CSRT

0.0128493575321234

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree