SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00442
Pre Gene Modal
BGIBMGA000749
Annotation
PREDICTED:_trypsin_alpha-4-like_[Papilio_xuthus]
Location in the cell
Cytoplasmic   Reliability : 1.987
 

Sequence

CDS
ATGAATACAAAATATTGCAAACAGAACGAAGTGGACTTCAAGCCGGGTATGCTGTGCGTCGGCGTGGCGAGGCAGGTGGAACCGAACTGCTCTTGTTTGGGAGTTCCGGGCGCCCCCCTTGTCGTCGATTCGACATTGCTTGGCCTCCAGTCCTGGGGCTTGGGGTGCGGCTATCAGCATGACCTACCTTTAGTTTATACCGACATGATGTATTACGAAAGATGGCTGGTACACAACATCAACATACTCCAGCTTCTAGGAAAAAGCAACCTGACAACTATTATTGAGGCAACGAATAGCTACATTGCGGCTTTGTGGCTCCGAACGACCAGGGTGATTAAGCCGCCGTCCTATATGTACGTTAACAAAGAACTCGAGCCGATGACATTCGATAAATACATCGTCAAATTAAAAGGAACGGTGTACGATATCCGCGATGTAATAAAAGAAGGAGCATTCAGCAAAATGAAGCAAGAAATGTTAAAAAAATTAAGAAAAGAAGAAAAAATGATCAATTACTTAAGGAAAGATAAAACCAAAATTGAAGTTCGGCCATTTTTGAATAAAAATATACGTGTAGCGGATGTTACCGACAAGGTCTACGATGATTTGAATGATTTGATTGTTGAAGACGACGAAAGCGATACTGATAATGTAACCAATTCTGTTGAAGAAGACACCGGTGACAATTATTAA
Protein
MNTKYCKQNEVDFKPGMLCVGVARQVEPNCSCLGVPGAPLVVDSTLLGLQSWGLGCGYQHDLPLVYTDMMYYERWLVHNINILQLLGKSNLTTIIEATNSYIAALWLRTTRVIKPPSYMYVNKELEPMTFDKYIVKLKGTVYDIRDVIKEGAFSKMKQEMLKKLRKEEKMINYLRKDKTKIEVRPFLNKNIRVADVTDKVYDDLNDLIVEDDESDTDNVTNSVEEDTGDNY

Summary

Pfam
PF00089   Trypsin
Interpro
IPR009003   Peptidase_S1_PA        + More
IPR001254   Trypsin_dom       
SUPFAM
SSF50494   SSF50494       
PDB
1A5I     E-value=3.74704e-07,     Score=127

Ontologies

Topology

Length:
231
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.45517
Exp number, first 60 AAs:
0.11085
Total prob of N-in:
0.45076
outside
1  -  231
 
 

Population Genetic Test Statistics

Pi
23.595115
Theta
25.091184
Tajima's D
-0.872263
CLR
0.021875
CSRT
0.164241787910604
Interpretation
Uncertain
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