Silkworm Genome Informatics Database

Gene

KWMTBOMO00436

Annotation

PREDICTED:_uncharacterized_protein_K02A2.6-like_[Stegastes_partitus]

Location

Bomo_Chr1(-):12879763-12884044 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.427

CDS

ATGGATAAATACAATCCAGATATATTCAGAATTGACGATTACATTGATTTTTTCGAAAACAAATGCAAAATTCTTGATATCGATAACAGCAACTTACAGAAAGATTTGCTTCTGAATTTACTAACACCAGAGATATTCCACGAATTAAAAGTAGCTTTAACGCCTGATTTCGATATAGCTACATACAGCGAAATTTGTAACAACTTATTAGACCTCTATCGCATAAAAACGACGAGGTATAGAGCCTTAACAGAATTCTGGAATTGCACTAGAGAACAAAATGAAACGATGGAACACTATGCAAACAGATTAAAAGGTCTTAGTCGGGATTGTGGCTACACTAATGACTTCCTGGAACGACAATTACGTGACCGCTTTGCCACTGGATTGAATCATCCAGATTTAGAAACCGACTTGAAACAAAAATGGCCTGATTTAGTTCAAATGGTAGACGGAATACCAAGAGAAGTAACCCTTCAACAAATTTTTACAATCTCTCAATCAAGAGAACAAGCAGAACAAGACACACCACGAACAAGTATTAAAAAAATAAATAGGAGCAAAACCAAAACCGTACCATTACATCAAAATACAACACGAAAATTAAATCCAATGCATTGTTTACGCTGTGGAAAGAAAGAACGGCAGAGCCTATCACAGTGTTCAGCCAAGGACCATATTTGTAAAGAATGTAACACGAAAGCACACTTTGAGAGTTGTTGCATTAAGTCTGGACGGGCATACATCAGCTATTCAGAAGGGAGCCGAAAATCAATTAAAAAAATAACAAGACCTCATAAGTCCTCAACATCATCATCATCATTTATCAGTAATAACGAGGAAGAAAGCGATGATGAAGTTATCTGCAGCGTCTTGGGTACACGTAAGAGAGAATGCAAACAAATCGATGTACGGATCAATGACATACCTTGCACTATGGATCGGGACCCCGGCTCTGCGTATTCAATAATAAACACGACATTGTGGAAAAAATTAGGATCACCATCTTTACAACCCGCCCCGAAACTTAAAGCCTACGGCAACACAAACTTAAAAACAAAGGGAATTACAAAAGTGACAGTCGAAGTCGACGGACTGCAAAAACTTCTACCTGTGGTCGTAATGAAAAATGCCAAACCAATGTTATTTGGTTTACATTGGAGTGAAGTTTTTGAAATGGAATTTCCAAAACCAGTATACTCCATCAAAACATCAACACCGATTACTCTTAAACAAATACTGGATAAACATTCACAACTCTTTGATGGAAAACTAGGAAAAGTTAACAATTATTACGTAAACATACATGTCAAACCAGAAGCTGAACCGATCCACTTTCCTGCACGGCCTATAAAATTTAGCATGAAAAAGAATATAGAAAGGGAGATAGATCGTCTGATCTCAGAAGGGATAGTGGAAAAAGTAGATCCTAATATTACACCTATTGAATGGGCTACACCCACAGTTAACATTCTGAAATCTACAGGGGAAGTTAGGATATGTGGAGACTACAGAACTACACTTAATCCAGTACTTATTAAACATCTACATTACAAAACATCATTATTAAACCCAGTTCCAATTTTCGATCAACTACGCCAAAATCTCGCAAACGATACAAAGAAATGCATAACGTCTTCACAACCATTAATTGCATTTGACGAGAAACGTCCCCTTTATTTAGCATGTGACGCTTCCGAAAAGGGATTGGGTGCAGTATTATTCCACAAGGACTCGAACATAGAACAACCAATTGCTTTTGCTTCAAGGAAACTACGACCAGCGGAAATGAAATATTCCGTTATTGATCGTGAAGCTTTAGCAATAGTATTTGGTATAAAAAAATTTGATCAGTACTTGAGAGGAACGAAATTTAATCTAGTTACGGACCATAAGCCTCTTATAAATATTATGGGTGCACGCCGCAACCTTCCTAAACTAGCCAATAACCGATTGGTAAGATGGGCTCTAGTAGTGGGAAATTATCAATATGACATTTGCTACAGGAAAGGTGAAAATAACACATTAGCTGATTGCTTTTCCAGATTACCAAACCCTGAAACGGAACCCTCCGAGACAGAAGGGCTTGTACATAAAATAGAACTACGTCTTTTGAGCACTCGAATGACTGACCTTAACCTATCAGAACAGTTACTTATGAAAACAACTGCAAAGGATCATATACTCACAAAAGTTTGTCAAAATTTAAAAACCGGCTGGAGAGAATCAGAATACAATCCAGAAATGAAACCATTCTACAGAAACCGGACTGAATTATCTGTTGAGAATAAGATACTTATGAGGCAAAGACGCATCGTTATACCTACAGCACTCCGAAAAGCCATTCTTACATACCTTCATCGAGGACATCCTGGCATTTCTGCTATGAAAGCACTTTCACGTTACTATGTTTGGTGGCCTAACCTTGACGAAGACATAGAATTATTTGTCAAGAAATGTACCAGATGCCAACAGAACCGCCCTTGTAATCCTGAACTTCCTGTATTTTCCTGGTCCATACCAGAAGAAGTATGGGAGAGAATCCATATCGACTTTGCTGGACCGTTCGAAGGATCGTATTGGTTGGTATTGTGCGACGCTCTCTCTAAATGGGTGGAAATACGACCGATGAAAAACATCAACACCAGATCACTTTGTCTTACATTAGATAACATATTTTGTACATTTGGCTTACCAAAAATTATTATATCCGATAATGGAACTCAATTTACATCTTATGAATTTAAAGAATATTGCACAAAACAGTCGATTTTACATGTCACATTATCTCCATATCATCCTCGGACAAATGGGCTGGCAGAACGTTTAGTCAGAACATTCAAAAATAGAATGGCATCGGTAGACAACACAAATCTCGAGCGCCGACTATTAGAATTTTTGTTTACATACAGAAACACTCCGCACTCGTCCACTGGTAAATCTTCAGCTGAGATGATGTTTGGAAGACAATTGAATTGCATACTTTCCAACATTACGCCAGACAAAGGAAGATTAATGCAGTATTTGCAAGTAAAAGAAAATATTCGTACCACATCACCGAGTTACCGACCAAGAGGACTAGAAAAACGAAGACATGCTGATCACATCAGGCCACGCGAGTTCTCCACCTCAGAAACCCCGAGGAATGAAAGGGCGCATTCTTCTATGCTGTCGGCGACTGCTTCTCCAGACATTGGAATGGAAACAACAATTAGCGAAAGGCTAACTAAAAACAAGAATTCGGCAGCAGTACCATTACCTACACCGCAGTCGCCTACAAATGTACAAATTTCTCCAAATTCACCTTCACCGCATTCGAAGTTATACTCCTCACCTGCTCCGGTCTCCACTCTTGTGCCATTTGCTCCGCGTCGAAGTAATCGACGTATACAGGACCCCGTCGTCTGA

Protein

MDKYNPDIFRIDDYIDFFENKCKILDIDNSNLQKDLLLNLLTPEIFHELKVALTPDFDIATYSEICNNLLDLYRIKTTRYRALTEFWNCTREQNETMEHYANRLKGLSRDCGYTNDFLERQLRDRFATGLNHPDLETDLKQKWPDLVQMVDGIPREVTLQQIFTISQSREQAEQDTPRTSIKKINRSKTKTVPLHQNTTRKLNPMHCLRCGKKERQSLSQCSAKDHICKECNTKAHFESCCIKSGRAYISYSEGSRKSIKKITRPHKSSTSSSSFISNNEEESDDEVICSVLGTRKRECKQIDVRINDIPCTMDRDPGSAYSIINTTLWKKLGSPSLQPAPKLKAYGNTNLKTKGITKVTVEVDGLQKLLPVVVMKNAKPMLFGLHWSEVFEMEFPKPVYSIKTSTPITLKQILDKHSQLFDGKLGKVNNYYVNIHVKPEAEPIHFPARPIKFSMKKNIEREIDRLISEGIVEKVDPNITPIEWATPTVNILKSTGEVRICGDYRTTLNPVLIKHLHYKTSLLNPVPIFDQLRQNLANDTKKCITSSQPLIAFDEKRPLYLACDASEKGLGAVLFHKDSNIEQPIAFASRKLRPAEMKYSVIDREALAIVFGIKKFDQYLRGTKFNLVTDHKPLINIMGARRNLPKLANNRLVRWALVVGNYQYDICYRKGENNTLADCFSRLPNPETEPSETEGLVHKIELRLLSTRMTDLNLSEQLLMKTTAKDHILTKVCQNLKTGWRESEYNPEMKPFYRNRTELSVENKILMRQRRIVIPTALRKAILTYLHRGHPGISAMKALSRYYVWWPNLDEDIELFVKKCTRCQQNRPCNPELPVFSWSIPEEVWERIHIDFAGPFEGSYWLVLCDALSKWVEIRPMKNINTRSLCLTLDNIFCTFGLPKIIISDNGTQFTSYEFKEYCTKQSILHVTLSPYHPRTNGLAERLVRTFKNRMASVDNTNLERRLLEFLFTYRNTPHSSTGKSSAEMMFGRQLNCILSNITPDKGRLMQYLQVKENIRTTSPSYRPRGLEKRRHADHIRPREFSTSETPRNERAHSSMLSATASPDIGMETTISERLTKNKNSAAVPLPTPQSPTNVQISPNSPSPHSKLYSSPAPVSTLVPFAPRRSNRRIQDPVV

Uniprot

A0A1S3DTG6 A0A1S3DUJ5 A0A1S3DTM5 X1XTW6

EMBL

ABLF02008333 ABLF02020937

Proteomes

UP000079169 UP000007819

Pfam

PF00665   rve        + More
PF17921   Integrase_H2C2
PF17919   RT_RNaseH_2
PF17917   RT_RNaseH

Interpro

IPR036875   Znf_CCHC_sf        + More
IPR012337   RNaseH-like_sf
IPR001878   Znf_CCHC
IPR041577   RT_RNaseH_2
IPR001584   Integrase_cat-core
IPR036397   RNaseH_sf
IPR041588   Integrase_H2C2
IPR021109   Peptidase_aspartic_dom_sf
IPR041373   RT_RNaseH
IPR001995   Peptidase_A2_cat

SUPFAM

SSF57756   SSF57756        + More
SSF53098   SSF53098
SSF50630   SSF50630

Gene 3D

2.40.70.10 3.30.420.10

ProteinModelPortal

A0A1S3DTG6 A0A1S3DUJ5 A0A1S3DTM5 X1XTW6

PDB

3S3O E-value=4.88675e-15, Score=202

KEGG

105842438 no KO assigned | (RefSeq) uncharacterized protein K02A2.6-like

GO

GO:0015074 GO:0003676 GO:0008270 GO:0004190 GO:0030117 GO:0005198 GO:0030126 GO:0005488 GO:0003677 GO:0003707 GO:0007169 GO:0016021

Length:

1135

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00114

Exp number, first 60 AAs:

0.00017

Total prob of N-in:

0.00001

outside

1 - 1135

Pi

0.231434

Theta

2.065005

Tajima's D

-2.174603

CLR

0

CSRT

0.00194990250487476

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree