SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00432
Annotation
reverse_transcriptase_[Bombyx_mori]
Full name
Probable RNA-directed DNA polymerase from transposon BS       + More
RNA-directed DNA polymerase from mobile element jockey      
Alternative Name
Reverse transcriptase
Location in the cell
Nuclear   Reliability : 2.172
 

Sequence

CDS
ATGGTTAGGAACGACAGGCTCACTGCTCGTGGTGGTGGTACCGTCATTTACTATAGAAGAGCCCTGCATTGCGTCCCGCTCGATCCTCCCGCGCTCGCTAATATCGAAGCATCAGTGTGCCGAATCTCACTGACGGGACACGCGCCGATCGTTATCGCGTCCGTTTATCTTCCACCGGATAAGATCGTTCTAAGCAGTGATATCGAGGCGCTGCTCGGTATGGGGAGCTCTGTCATTCTGGCGGGCGACCTAAATTGTAAACACATCAGGTGGAACTCACACACCACAACCCCTAATGGCAGGCGGCTCGACGCGTTAGTCGATGATCTCGCCTTCGATATCATCGCTCCGCTAACCCCGACTCACTACCCGCTAAATATCGCGCATCGCCCGGATATACTCGACAAAGCGTTATTAAAAAACGTAACTCTGCGCTTACACTCGATCGAAGTAGTTTCAGAGTTAGATTCAGACCACCGTCCCGTCATTATGAAGCTCGGTCGCGCTCCCGATTCCGTTCCCGTCACGAGGACTGTGGTGGATTGGCACACGCTGGGCATGAGCCTGGCTGAATCTGATCCACCATCGCTCCCGTTTAGCCCGGACTCTACCCCGTCTCCTCAGGATACCGCTGAAGCCATAGACATCGTAACGTCACACATCACCTCGACATTAGATAGGTCATCGAAGCAAGTTGTGGCGGAGGACTTCCTTCACCGCTTCAAATTGCCCGACGATATTAGGGAACTCCTTAGAGCTAAGAACGCCTCGATCCGCGCCTACGATAGGTATCCTACAGTGGAAAATCGTACTCGAATGCGTGCCCTACAACGCGACGTAAAGTCTCGCATCGCCGAAGTCCGAGATGCCAGATGGTCTGATTTCGTAGAAGGACTCGCGCCCTCTCAAAGGTCTTACTACCGCTTAGCTCGTACTCTCAAATCGGATACGGTAGTAGCTATGCCCCCCCTCGTAGGCCCCTCAGGCCGACTCGCGGCGTTCGATGATGACGAAAAAGCAGAGCTGCCGGCCGATACATTGCAAACCCAGTGCACGCCCAGCACTCAATCCGTGGACCCTGTTCATGTAGAATTAGTAGACTGTGAGGTAGAACACAGAGCCTCCTTGCCACCCTTGGATATGTTACCACCCGTCACCCCAATGGAAGTTAAAGACTTGATCAAAGACCTACGTCCTCGCAAAGCTCCCGGTTCCGACGGTATATCTAACCGCGTTATTAAACTTCTACCCATCCAACTCATCGTGATGCTGGCATCTATCTTCAATGCCGCTATGGCTAACTGTATCTTTCCCGCGGTGTGGAAAGAAGCGAACGTTATCGGCATACACAAACCCGGTAAACCAAAAAATAATCCGACGAGTTACCGCCCGATTAGCCTCCTCAAGTCTCTGGGCAAACTGTATGAGCGTCTGCTCTACAAACGCCTCAGAGACTTCGTCTCATCAAAGGGCATTCTCATCGATGAACAATTCGGATTCCGTGCAAATCACTCATGCGTACAACAGGTGCACCGCCTCACGGAGCACATTCTCGTGGGACTTAACCGACCAAAACCGATCTACACGGGAGCCCTCTTCTTCGACGTCGCAAAAGCGTTCGACAAAGTCTGGCACAACGGTTTGATTTTCAAACTTTTCAACATGGGCGTACCGGACAGTCTCGTGCTCATCATACGGGACTTCTTGTCTAACCGCTCTTTTCGATATCGAGTAGAGGGAACCCGCTCCTCCCCGCGACCACTCACGGCTGGAGTCCCGCAAGGCTCCGTTCTTTCTCCGCTCCTATTTAGTTTATTTGTCAATGATATTCCTCGGTCGCCGCCGACCCAGCTAGCCTTATTCGCTGACGACACAACCGTTTACTACTCAAGTAGAAACAAGTCCCTAATCGCAAGTAAGCTCCAGAGTGCAGCGTTAACCCTCGGACAGTGGTTCCGAAAATGGCGCATAGACATCAACCCAGCGAAAAGCACAGCAGTGTTATTTCAAAGGGGAAACTCTCCGCTTATTTCCTCCCGCATTAGGAGGAGAAATATCACACCCCCGATCACCCTCTTCGGCCAACCTATACCCTGGACCAGGAAGGTCAAGTACCTGGGAGTCACCCTGGATGCATCCATGACATTCCGCCCGCATATAAAAACAGTCCGTGACCGTGCCGCATTTATTCTCGGTAGACTCTATCCTATGATCTGTAAGCGGAGTAAAATGTCCCTTCGGAACAAGGTGACACTTTACAAAACTTGCATATGGCCCGTCATGACTTACGCGAGTGTGGTGTTCGCTCACGCGGCCCGCACACACATAGACACCCTCCAACCCCTACAATCCCGCTTTTGCGGGTTAGCCGTCGGGGCTCCGTGGTTCGTGAGGAACGTCGACCTACCCGACGACCTGGGCCTCGAATCGATCCGCAAACATATGAAGTCAGTGTCGGAACGTTACTTCGATAAGGCTATGCGTCATGATAATCGCCTTATCGTAGCCGCCGCTGACTACTCCCCGAATCCTGATCATGCAGGAGTCAGTCACCGTCGACGCCCTAGACACGTCCTTACGGATCCATCAGATCCAATAACCTTTGCATTAGACGCCTTCAGCTCTAACACTAGGAGCAGGCTTAGGGACCCCGGTAACCGTACTCGTCGAACTCGACAAAGAGTTCGCCGTGCAACCTAA
Protein
MVRNDRLTARGGGTVIYYRRALHCVPLDPPALANIEASVCRISLTGHAPIVIASVYLPPDKIVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIIAPLTPTHYPLNIAHRPDILDKALLKNVTLRLHSIEVVSELDSDHRPVIMKLGRAPDSVPVTRTVVDWHTLGMSLAESDPPSLPFSPDSTPSPQDTAEAIDIVTSHITSTLDRSSKQVVAEDFLHRFKLPDDIRELLRAKNASIRAYDRYPTVENRTRMRALQRDVKSRIAEVRDARWSDFVEGLAPSQRSYYRLARTLKSDTVVAMPPLVGPSGRLAAFDDDEKAELPADTLQTQCTPSTQSVDPVHVELVDCEVEHRASLPPLDMLPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPIQLIVMLASIFNAAMANCIFPAVWKEANVIGIHKPGKPKNNPTSYRPISLLKSLGKLYERLLYKRLRDFVSSKGILIDEQFGFRANHSCVQQVHRLTEHILVGLNRPKPIYTGALFFDVAKAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGSVLSPLLFSLFVNDIPRSPPTQLALFADDTTVYYSSRNKSLIASKLQSAALTLGQWFRKWRIDINPAKSTAVLFQRGNSPLISSRIRRRNITPPITLFGQPIPWTRKVKYLGVTLDASMTFRPHIKTVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIWPVMTYASVVFAHAARTHIDTLQPLQSRFCGLAVGAPWFVRNVDLPDDLGLESIRKHMKSVSERYFDKAMRHDNRLIVAAADYSPNPDHAGVSHRRRPRHVLTDPSDPITFALDAFSSNTRSRLRDPGNRTRRTRQRVRRAT

Summary

Catalytic Activity
a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)
Cofactor
Mg(2+)
Mn(2+)
Miscellaneous
Prefers poly(rC) and poly(rA) as template and activated DNA is not effective.
Keywords
Nucleotidyltransferase   RNA-directed DNA polymerase   Transferase   Transposable element  
Feature
chain  Probable RNA-directed DNA polymerase from transposon BS
EC Number
2.7.7.49
EMBL
AB018558    BAA76304.1    AB055391    BAB21761.1    U07847    AAA17752.1    + More
KQ459265    KPJ02064.1    AF081103    AAC72921.1    GEZM01008457    JAV94772.1    GALX01005299    JAB63167.1    GALX01005359    JAB63107.1    KQ973342    KXZ75569.1    KQ971729    KYB24751.1    GBBI01004395    JAC14317.1    ABLF02042518    ABLF02057746    GGMR01018716    MBY31335.1    ABLF02008153    ABLF02008462    ABLF02008464    GGMS01006359    MBY75562.1    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    ABLF02034467    GBBI01004571    JAC14141.1    GFTR01008262    JAW08164.1    NEVH01006736    PNF36716.1    GFTR01008038    JAW08388.1    GEZM01053022    JAV74219.1    NEVH01022639    PNF18527.1    GGMS01002992    MBY72195.1    GFTR01008279    JAW08147.1    NEVH01011985    PNF31054.1    NEVH01027074    PNF13841.1    NEVH01009134    PNF33528.1    NEVH01021205    PNF19912.1    ABLF02024246    ABLF02028535    ABLF02028545    GGMR01003407    MBY16026.1    NEVH01016302    PNF25823.1    GFTR01008271    JAW08155.1    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    ABLF02023911    ABLF02041767    ABLF02029306    ABLF02029314    ABLF02060138    GGFL01004957    MBW69135.1    GFTR01008256    JAW08170.1    KK119692    KFM76444.1    NEVH01020940    PNF20481.1    GFTR01008261    JAW08165.1    GFTR01008251    JAW08175.1    GBHO01021814    GBHO01010549    JAG21790.1    JAG33055.1    GGFL01005012    MBW69190.1    NEVH01026386    PNF14434.1    GFXV01000908    MBW12713.1    GGMR01016905    MBY29524.1    NEVH01017470    PNF24199.1    GGFJ01001844    MBW50985.1    GGMR01000226    MBY12845.1    GGMR01000676    MBY13295.1    GGMS01017365    MBY86568.1    GFTR01008246    JAW08180.1    GGFJ01001842    MBW50983.1    GGFJ01001843    MBW50984.1    GBGD01000415    JAC88474.1    LBMM01013518    KMQ85605.1    GGFJ01001822    MBW50963.1    GFTR01008151    JAW08275.1    GEZM01084969    JAV60363.1    GGMR01003864    MBY16483.1    GFTR01008257    JAW08169.1    RPOV01000134    RPJ78669.1    GBBI01003810    JAC14902.1    AY060438    AAL25477.1    GGFJ01001858    MBW50999.1    KU543685    AMS38375.1    GGMS01000737    MBY69940.1    GGFJ01002256    MBW51397.1    NWSH01000032    PCG80496.1    GGFJ01001857    MBW50998.1    GGFJ01002257    MBW51398.1    S59870    AAB26437.2    KK119261    KFM75202.1    GFTR01008260    JAW08166.1    NEVH01005277    PNF39135.1    M22874    M38643    GGMR01012305    MBY24924.1    AF456125    AAL57609.1    DNOY01000259    HBE18313.1    GECL01003538    JAP02586.1    ABLF02040174    ABLF02040183    ABLF02055266    AY180919    AAN87272.1    GGMR01012443    MBY25062.1    GFTR01008269    JAW08157.1    NEVH01019963    PNF22185.1    GEDC01000337    JAS36961.1    GGMS01002955    MBY72158.1    GBGD01000389    JAC88500.1    GGMR01004661    MBY17280.1   
Pfam
PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF03372   Exo_endo_phos
PF07530   PRE_C2HC
PF07727   RVT_2
Interpro
IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR006579   Pre_C2HC_dom       
IPR013103   RVT_2       
SUPFAM
SSF56219   SSF56219       
Gene 3D

Ontologies

Topology

Length:
899
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
15.24376
Exp number, first 60 AAs:
0.07714
Total prob of N-in:
0.05755
outside
1  -  899
 
 

Population Genetic Test Statistics

Pi
0.377849
Theta
0.988983
Tajima's D
0
CLR
0.934905
CSRT
0.430378481075946
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Copyright@ 2018-2023    Any Comments and suggestions mail to:zhuzl@cqu.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号