Gene

KWMTBOMO00426

Pre Gene Modal

BGIBMGA000486

Annotation

period_[Bombyx_mori]

Location

Bomo_Chr1(-):12478149-12525867      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.83

CDS

ATGGATAACCTTGAAAACTCTGAGAACACTGACAAAATATCAGATTCGGCATACTCAAACAGCTGCAGTTACAGTCAATCAAGAAGAAGTCACAGCTCAAAATCTACTCATTCCGGGAGTTATTCTAGCGGCAGTAGCGGATACGGAGGTCGACATGTTACTGGCACTAACAGTAATAAGTTGGCTCAGTCACCAAATAAAGATAAAGAGTTAAAGAAAAAGAAACAATCACAAACAGAGCTAACGACTACCAAAGAACAAAATGAAGGAGAAAGCGGACCTCAAGAATCTGTGAACCTGGAAACTCTAGAGGAGGAGAAGCATGATGTTACGAGCGCACCCTCTCCAGCGCATGTACAGGTCGAGAAGGGACCTGAGAATATGGATATAGCTTCAACAGACACTGAAGGCGACAAGGTAGAGGTTTTATCGTGTGACCTGCAACCGCAGAACTCTACTGTCGATGTAGTTACGAGTCGTTCGAATCTAATCTGTTACACTGATGGATTTTCATGCGTTATATCGATGCACGATGGAATCGTAATGTACACGACATCATCGCTGACGGCTATACTCGGTTTCCCGAAGGACATGTGGATCGGGAGGTCATTTATCGATTTCGTTCATCCAAGGGACCGTAGCACGTTCGCGTCACAGATAACCAGTGGTTTGGCCGTCCCGAAAACTGCAAACGGTACGCAAGAAAAAGCTCAATCGCCGGGTAATTCTGGATCGACTATGGTGTGTCGGATAAGACGTTACAGAGGTCTGAGCACGGGGTTCGGAGTTAAGGAAAGAGTGGTCACGTTCATGCCGTTCCTTTTGAAATTCACGTTCAAGAACATAAGCGATGAAGAGGGAAATGTCATCTACCTCGTCATACAGGCCACACCATTTTTTTCAGCGTTCAAAACGTCGTTTGAAATATTACCGAAAGTTAATCCTTTCGTGATGCGTCACTCCGCGAATGGTAATCTCGAGTACTTAGACCCAGAATCTGTACCTTATCTCGGATATTTACCTCAAGATGTCCAAGACAAGGACGCATTGCAACTCTATCATCCGGAAGATTTGGAATACCTCCAGCAAGTATACGAGGTAATCGTTAAGGATGGTGGCATGCCGCGTTCCAAAACTTACAGAATGATGACACAAAACGGTGATTACATAAAAATCGAAACCGAATGGTCTTCGTTTATTAATCCTTGGTCGAAGAAGCTGGAATTCGTCATCGGGAAACATTACATCATTGAAGGCCCCGAGAATCCAGATGTATTCCAGTCCCAAGATCCGGAGAAACATACAAAATTATGCGACGAACAAATAAAAAAGTCCATGGTATTTCGCGAGAATATCGTTAAACTTATGAATGAGGCTCTAACGAAACCAGCGGAAGTTGCCAAACAGCAAATGAGCAAGCGTTGCCAGGACTTAGCGTCGTTCATGGAGAGCCTCATGGAGGAACCACCGAAAAATGACGAGGAATTACGCCTAGAAATACAGGATCCGGACCACAGTTATTATGAGCGTGATTCGGTAATGCTCGGCGGGATATCTCCCCATCACGACTACAATGACAGCAAATCAAGCACAGAAACACCGCTGAGTTATAATCAACTAAACTATAACGAGACATTACAAAGATATTTCGACAGTCATGAACCCTTTTCGAGCGAGAACTTCAATCCCTTGATTGTGGCAAAGGAGCCAAATAATTTAAAATCGATACTAAGTACTTGTTTATCACCAATGGCTCAGAACTCTGGCGATTCGACCGAGTTGAATAGTTCGTCCGATTCTAGTAGTATGGCCCTGGGAGGAGTAAGTCCTGTGGGTATATTAGGCGACTACCACCACGTTCGGCTCACCGAGTTCCTACTAACCAAACACAATGATGAAATGGAAAAGGAACTGATAAATATGCATAGAGAGAGCCGGTCCAATAGTAAAGGAGAAAGAGATAAGACATCTAACGAAACGAGACAGAAGAAAAAGGAACATCTAGCGAGGTGTAAAGCTTCGTTTCATCCAACCGCGACCAGCACCACACCTGTGGACAAAGAAGTGTATAAAAAACCTCACGGTGTCAAACGTGCTTCGAAACATATCGAAACGGAAACTGTATCGCACAAATACCATTGTCCATCGCCCAGAGCGTCTAGACCTAGGCAAACCACCAGTGCGGCGCCTGTACAAACTTCGTCCACTTTGACTACTTCTGTTGCCTCGACTACCTGGCCACCCAGCACCAATGCTGCTGGAAATATGAACACATTCATACTAGGAGTCGGAATGGCTCCACAGATGTCCCTTATAAGTCCGGTTCCGCCAATGGCAGGAATGCTTCCGTTGTATTACACTCCGATGGCCACAATGGCTCCCGTGCCTTCCACATCGGAGGCCGCGAACCATCAAAATCTTCATAATAATCCACAGCAGTATGCTCCACCTCCAATGCAATGTGTATTGTACGGTCAGCCTATATACGGTCAGCCGATGTACAGTTCGCCGTTCGTGTACTCACCAATGAACCCGCACACTAACTATCCTATGCAACAGACCACGCCGCAACCGAATGCTCAGTTCACACCCACAAACACAATGAATCCCTTGTGTTTGGCCAATAGCAACTATGAAGAGAGAACAGAAGCAGGGCATGCCACAACGCCATCTAAAGACATTAAGAAAACGAGCAGGTTGGGTAACACCGAGGAGATTGTAGACAAAACTGACGGAGAATCTAGCTATTCCTCGTTTTACTCGTCGTTTTTCAAGACGGAATCTGGCAGCGCGGAAGAGAGTGGCGAAAGCAAGAAAAGGGACACAAGAAATCACGTCAAATTTTGGGATAAAAACTATCGTGGCGACGATGGGATGGCGATGCCTGGTTCAACGGAGGTCCGCCAAACTTTTTCCGATCACCATATTCCAGCGAAGGTACCCAGACGAAACATTGAACCACCATGGATGGAGCAGGTATGCCTGACGTCAGAGCTCGTCTACAATTACCAGATAAGGACAAAAACAATGGAGGAAGTACTTTCATCTGACAAGCAGAAGATTAGTAACCTTGAGCAGCCGTCACTAGTGAACGAGCAACTTGGTCAGCTGTACCTGGACCTTCAGTTGGAAGGTGTCGCCGCGCGACTCACCCTCGAGGAGGGTATCACCAGTTCCAGCAGTTCCGGTGAAGAGACAACAACCTCGTCCAAGAGGAAACGGGAATACAGCAAATTGGTTATGATATATGAAGAGAACGCTCCCTTCCCACCTCCTTCTTCTGAAGAGATACAAGAGATACCGACAGCCAATCAGTCCGAGTCCTAG

Protein

MDNLENSENTDKISDSAYSNSCSYSQSRRSHSSKSTHSGSYSSGSSGYGGRHVTGTNSNKLAQSPNKDKELKKKKQSQTELTTTKEQNEGESGPQESVNLETLEEEKHDVTSAPSPAHVQVEKGPENMDIASTDTEGDKVEVLSCDLQPQNSTVDVVTSRSNLICYTDGFSCVISMHDGIVMYTTSSLTAILGFPKDMWIGRSFIDFVHPRDRSTFASQITSGLAVPKTANGTQEKAQSPGNSGSTMVCRIRRYRGLSTGFGVKERVVTFMPFLLKFTFKNISDEEGNVIYLVIQATPFFSAFKTSFEILPKVNPFVMRHSANGNLEYLDPESVPYLGYLPQDVQDKDALQLYHPEDLEYLQQVYEVIVKDGGMPRSKTYRMMTQNGDYIKIETEWSSFINPWSKKLEFVIGKHYIIEGPENPDVFQSQDPEKHTKLCDEQIKKSMVFRENIVKLMNEALTKPAEVAKQQMSKRCQDLASFMESLMEEPPKNDEELRLEIQDPDHSYYERDSVMLGGISPHHDYNDSKSSTETPLSYNQLNYNETLQRYFDSHEPFSSENFNPLIVAKEPNNLKSILSTCLSPMAQNSGDSTELNSSSDSSSMALGGVSPVGILGDYHHVRLTEFLLTKHNDEMEKELINMHRESRSNSKGERDKTSNETRQKKKEHLARCKASFHPTATSTTPVDKEVYKKPHGVKRASKHIETETVSHKYHCPSPRASRPRQTTSAAPVQTSSTLTTSVASTTWPPSTNAAGNMNTFILGVGMAPQMSLISPVPPMAGMLPLYYTPMATMAPVPSTSEAANHQNLHNNPQQYAPPPMQCVLYGQPIYGQPMYSSPFVYSPMNPHTNYPMQQTTPQPNAQFTPTNTMNPLCLANSNYEERTEAGHATTPSKDIKKTSRLGNTEEIVDKTDGESSYSSFYSSFFKTESGSAEESGESKKRDTRNHVKFWDKNYRGDDGMAMPGSTEVRQTFSDHHIPAKVPRRNIEPPWMEQVCLTSELVYNYQIRTKTMEEVLSSDKQKISNLEQPSLVNEQLGQLYLDLQLEGVAARLTLEEGITSSSSSGEETTTSSKRKREYSKLVMIYEENAPFPPPSSEEIQEIPTANQSES

Uniprot

Q589T5   Q1A177   Q589T4   Q699T7   Q58A64   A0A2A4JB96   + More
A0A2A4JC89   A0A2A4JBA6   A0A2A4JCU7   A0A0N7B1F4   A0A2S1ZDC4   A0A2A4JD59   A0A2A4JBP2   A0A2A4JD77   A0A2A4JD69   A0A2A4JBC6   Q7Z0C9   A0A212F9R2   A0A1E1W081   A0A1E1W3I5   A0A1E1VZ59   A0A1E1W8D6   A0A1E1WHH6   A0A1E1W955   A0A1E1WC99   A0A2A4JCV7   A0A2A4JD84   A0A1U9WVH2   A0A1S7IVT1   A0A1E1WDF8   T1TCE0   A0A194PLE4   A0A194QLY3   A0A0B5JGQ0  

Pubmed

16626732    12764200    22118469    26354079    25637625   

EMBL

AB179829    BAD93236.1    DQ393413    ABF21088.1    AB179830    BAD93237.1    + More
AY526605    AAS92606.1    AB048274    BAD93177.1    NWSH01002027    PCG69377.1    PCG69376.1    PCG69387.1    PCG69374.1    KM233160    AKC42321.1    MF374805    AWK22769.1    PCG69370.1    PCG69381.1    PCG69372.1    PCG69380.1    PCG69375.1    AY237279    AAO48719.1    AGBW02009564    OWR50468.1    GDQN01010733    JAT80321.1    GDQN01009508    GDQN01008381    GDQN01004548    JAT81546.1    JAT82673.1    JAT86506.1    GDQN01011037    JAT80017.1    GDQN01007835    GDQN01007420    JAT83219.1    JAT83634.1    GDQN01007172    GDQN01004614    GDQN01001054    JAT83882.1    JAT86440.1    JAT90000.1    GDQN01007526    GDQN01000936    JAT83528.1    JAT90118.1    GDQN01006487    GDQN01003950    GDQN01000497    JAT84567.1    JAT87104.1    JAT90557.1    PCG69384.1    PCG69382.1    KY446805    AQY60264.1    LC179547    BAX00428.1    GDQN01006041    JAT85013.1    KC996751    AGT62461.1    KQ459605    KPI91925.1    KQ461196    KPJ06374.1    KP025672    AJG06481.1   

Proteomes

UP000218220    UP000007151    UP000053268    UP000053240   

PRIDE

Q589T5    Q1A177    Q589T4    Q699T7    Q58A64   

Pfam

PF00989   PAS        + More
PF12114   Period_C
PF08447   PAS_3

Interpro

IPR013767   PAS_fold        + More
IPR035965   PAS-like_dom_sf       
IPR000014   PAS       
IPR022728   Period_circadian-like_C       
IPR013655   PAS_fold_3       

SUPFAM

SSF55785   SSF55785       

CDD

cd00130  PAS

ProteinModelPortal

Q589T5   Q1A177   Q589T4   Q699T7   Q58A64   A0A2A4JB96   + More
A0A2A4JC89   A0A2A4JBA6   A0A2A4JCU7   A0A0N7B1F4   A0A2S1ZDC4   A0A2A4JD59   A0A2A4JBP2   A0A2A4JD77   A0A2A4JD69   A0A2A4JBC6   Q7Z0C9   A0A212F9R2   A0A1E1W081   A0A1E1W3I5   A0A1E1VZ59   A0A1E1W8D6   A0A1E1WHH6   A0A1E1W955   A0A1E1WC99   A0A2A4JCV7   A0A2A4JD84   A0A1U9WVH2   A0A1S7IVT1   A0A1E1WDF8   T1TCE0   A0A194PLE4   A0A194QLY3   A0A0B5JGQ0  

PDB

1WA9     E-value=2.94328e-88,     Score=833

KEGG

692522    K02633 period circadian protein 2 | (RefSeq) Per; period

PATHWAY

04711    Circadian rhythm - fly - Bombyx mori (domestic silkworm)

GO

GO:0006355   GO:0016021   GO:0008270   GO:0033179   GO:0016020   GO:0005667   GO:0005737   GO:0003677   GO:0003707   GO:0007169  

Length:

1108

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.39809

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01673

outside

1  -  1108

 

 

Pi

2.442554

Theta

4.318116

Tajima's D

-2.069303

CLR

0.056754

CSRT

0.00789960501974901

Interpretation

Uncertain