SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00416
Annotation
PREDICTED:_V-type_proton_ATPase_116_kDa_subunit_a_isoform_1-like_[Bombyx_mori]
Full name
V-type proton ATPase subunit a      
Location in the cell
PlasmaMembrane   Reliability : 4.048
 

Sequence

CDS
ATGCACAAATCCACAAATAACTATTTCGATTATCGATTACGATATAATAACAGTGGCAAGCGAGGTGCAAATTGTGCTCCTCAAATTCTGATATTATTCATTGACATGTTCCTATGGACTAAAACGAAACCGGTGGGCGCGAACTGCGACGCGTACATGTTCAACAAACAAGAATTAGTTCAGAAGATACTGATGATTATAGCCATATCGTGTATACCTTTACTTTTATTGGGAACACCTGTGTATTTGTACTGTACTAACAAAAAGAAAACACAAAAGCCTGATGTCAAAGTGAGTGATTTCAGAAGATATCAGAGAAGAGACTCTGATGAAGAAAGGAAGGAACCTAAGAAAACCAGCGAAAAAGAGCACGACAGTTCTTCATTTGGGGATTTAATGATTCATCAAGCAGTACACACAATAGAGTTTGTCCTCAGTACAATATCACATACAGCTTCGTATTTGAGACTATGGGCATTATCTTTGGCGCATGTTGAATTATCAGAAATGTTATGGAATATGGTACTATCGAAACTGGCCTTACGGGACTACTCGATGTTCGGTGCCATCAAGGTATTCATCATATTCAGCGTTTGGGTCATGTTCACTATCTCCATTTTGGTGGTAATGGAGGGGCTATCTGCTTTCCTTCACACTTTAAGATTGCATTGGGTCGAGTTTATGAGCAAATTCTACATTGGAGGTGGATATCCGTTCCGACCTTTTAGTTTTGAAAACATATTGACAGCTGAAACGGAAAAATCAAAAGGAGAAAAGGGGGGGGCTACACATGACAACAGCAACAATGTTTAA
Protein
MHKSTNNYFDYRLRYNNSGKRGANCAPQILILFIDMFLWTKTKPVGANCDAYMFNKQELVQKILMIIAISCIPLLLLGTPVYLYCTNKKKTQKPDVKVSDFRRYQRRDSDEERKEPKKTSEKEHDSSSFGDLMIHQAVHTIEFVLSTISHTASYLRLWALSLAHVELSEMLWNMVLSKLALRDYSMFGAIKVFIIFSVWVMFTISILVVMEGLSAFLHTLRLHWVEFMSKFYIGGGYPFRPFSFENILTAETEKSKGEKGGATHDNSNNV

Summary

Description
Essential component of the vacuolar proton pump (V-ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes. Required for assembly and activity of the V-ATPase.
Similarity
Belongs to the V-ATPase 116 kDa subunit family.
EMBL
AGBW02009564    OWR50461.1    NWSH01000875    PCG73765.1    KQ461196    KPJ06379.1    + More
AGBW02012778    OWR44452.1    ODYU01004399    SOQ44233.1    GAIX01004080    JAA88480.1    KQ459605    KPI91919.1    NEVH01002707    PNF41458.1    GEZM01101880    GEZM01101878    JAV52238.1    GEZM01101879    JAV52239.1    KQ459220    KPJ02860.1    BABH01010757    BABH01010758    BABH01010759    GDQN01008557    GDQN01001991    JAT82497.1    JAT89063.1    AJVK01026954    KQ459984    KPJ18978.1    KB631625    ERL84786.1    GFDF01009184    JAV04900.1    APGK01052546    KB741213    ENN72620.1    GFDF01009183    JAV04901.1    ENN72621.1    KU550964    ANW09710.1    AK401898    BAM18520.1    CH916369    EDV93299.1    PNF41457.1    JXJN01007702    APCN01000888    LJIG01009864    KRT82228.1    KI208410    KI210033    ERL95858.1    ERL96138.1    GGMR01007929    MBY20548.1    GDAI01000904    JAI16699.1    JXJN01015358    GL771642    EFZ09639.1    AXCN02000267    AAAB01008987    EAA43151.2    GFXV01004235    MBW16040.1    GAMC01006625    JAB99930.1    CM000364    EDX12446.1    CH933806    EDW14441.1    KRG01017.1    KA646853    AFP61482.1    GFDG01002067    JAV16732.1    JXUM01123189    JXUM01123190    JXUM01123191    JXUM01123192    GAPW01000216    JAC13382.1    LBMM01002578    KMQ94637.1    GL440629    EFN65603.1    CH940652    EDW59356.1    KRF78813.1    CH964232    EDW80572.1    GFDG01002069    JAV16730.1    GGFM01000527    MBW21278.1    GGFM01000600    MBW21351.1    EDX12447.1    EDW80571.1    GGFJ01002077    MBW51218.1    AAZX01007551    CH902617    EDV42677.1    KPU79847.1    CH480820    EDW54647.1    KY921837    ART29426.1    GEBQ01024009    GEBQ01003411    JAT15968.1    JAT36566.1    CP012526    ALC46094.1    AF132183    AE014297    AAD34771.1    AAF55552.2    GEBQ01009678    GEBQ01002003    JAT30299.1    JAT37974.1    KQ977935    KYM98717.1    ADMH02001150    ETN63909.1    GGFK01001376    MBW34697.1    CH478180    EAT33671.1    CM000160    EDW95904.1    AXCM01006747    KQ780345    OAD51949.1    CCAG010019856    AJ439060    CAD27758.1    JRES01000835    KNC27927.1    ABLF02024323    EDW95903.1    GBXI01008638    JAD05654.1    GFDL01009700    JAV25345.1   
Pfam
PF01496   V_ATPase_I
Interpro
IPR002490   V-ATPase_116kDa_su        + More
IPR026028   V-type_ATPase_116kDa_su_euka       
PDB
6O7T     E-value=2.13977e-46,     Score=466

Ontologies

Topology

Length:
270
Number of predicted TMHs:
3
Exp number of AAs in TMHs:
65.17385
Exp number, first 60 AAs:
17.81728
Total prob of N-in:
0.92397
POSSIBLE N-term signal
sequence
inside
1  -  20
TMhelix
21  -  40
outside
41  -  62
TMhelix
63  -  85
inside
86  -  186
TMhelix
187  -  209
outside
210  -  270
 
 

Population Genetic Test Statistics

Pi
21.916013
Theta
20.859145
Tajima's D
-0.943183
CLR
0.026662
CSRT
0.152792360381981
Interpretation
Uncertain
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