Gene

KWMTBOMO00406

Pre Gene Modal

BGIBMGA000730

Annotation

PREDICTED:_SPARC-related_modular_calcium-binding_protein_1_isoform_X1_[Papilio_polytes]

Location

Bomo_Chr1(+):11897663-11927264      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 2.287

CDS

ATGAATATTTTTGATTCAGTGTTTCACTTATTATTTCTACACATCGTTAACTTGATATGTGGAGCAGCACCCGATGTTCAGACTAGTGAAATATGGAACGAGTTATGCAAGACGCGGGCAGCATCATGCGAGACAAACGCATCGAGTGTTCGGAGACCTGTTTGCGGTACCAACGGACGGACTTACGCCTCAAGGTGCCTGCTCATGAAGGCTCAATGTAACGGAGAACTTGTTGCCATAGCCAGAAAAGGGCCGTGTCTAGACGGGCAGTCGTCTTGTCTAATCGCGCATCGATACGCCCTGAACGCCCAAGCCCAGCAGAGAGCTCCTAGACCAGCGTACATCCCTCGGTGTCGGGCTGATGGTACCTATGCAGCGGTGCAATGCGGCGCATCAGGGACCACAGCTGCCGGATGCTGGTGTGTCACTCCCGACGGGAAGCCGCTGCCAGATACAGCTGTGAGGAATGGAAGACCCGACTGTACTAGAACTGGTAAATCACACGCAAGGCGGCGTTCTTCGATTCGCGGTCAACGTAACAAAAAGAGTTGCACCCGGACTGATCGTGCTTTGTTCAACGGGAACTTGATTAAAATATTTAATGGAGAATACGAGAGGATGCGGTCCGAAGCCAGCGGTCTCGCAACTGAATCAAAGATCGTAGCTGAGTGGAAGTTCAGAGAACTGGACCGAGATAAAAGCGACTCACTCCAAAAGTCCGAATATAGGGGACTGAGGAAACTTATCAAGAAGGTAGTCAAACCGAAGCGATGCGCCAGAGCTTGGGCTCGTGGCTGCGACGGGAATGGCGACGGCGAGATAGCCCGGGCCGAGTGGACAGCCTGTTTACTAGCAAACCCGGAGCCCCCTACACCGGATTACGAGGACAGCGGTCCGGAAGTCGAGCCTGATTACGAAGAGGAGCCGCCACCGGACCCGAGTTCAGTGTTACCAGGTATGCGGAACTCATTCGCCCCGGACGGCTCTGACTCGGACTCGAGGAGAGAGGACGAAGCCAACGACTGCTCTACAGACCGTCAAGCTGTTCTGGACGAACAGAAAGCAGGTGGTGCCGCGCTGTATGTACCCGAATGCACTGGCGATGGACGTTATGCTCGCGCTCAGTGCTACAGGTCAACTGGATACTGTTGGTGCGTCCACCAAGACACGGGGAAACCTATACCTGGTTCTTCTGTAAAGGATAGACGACCCGATTGTGATGCCGCACCACAGCACGCAAGCCCTATGAGAGGATGCCCTGAGCCTACGAAGGCGGCTTTCCTGAAGGAGCTGAGAAGTTTCTTTGCGTCCAGAATGACTGCCTCGGGAAATGGAACAGCACCCGGAGACATGGTGAAATGGGGTGCTTCAAGGGAAGAGCAGGCCGCAACGTGGACTTACGTGATGCTTGACAAAGATAAAGATAAAGCTTTAGAACGACGAGAGTGGAAAGCGTTTCACCAGCTGATAAACAGCGTGGACTCTCTGAGGAAGTGCGGTAGGAAGCTGCCTCGCTATTGCGATGTCAATCACGACAGCAAAATCAGCATCACAGAATGGATGGCGTGTTTGGAGGTCACCCAGGTCTCGCAAGGGCAGACAACGGAAGTGACAAAATTGCCGCCTAATCCAAGAAGGAAAGGTCCAAATCCTCTGGAGTCTATTCTGAAAGCTGATGACTGA

Protein

MNIFDSVFHLLFLHIVNLICGAAPDVQTSEIWNELCKTRAASCETNASSVRRPVCGTNGRTYASRCLLMKAQCNGELVAIARKGPCLDGQSSCLIAHRYALNAQAQQRAPRPAYIPRCRADGTYAAVQCGASGTTAAGCWCVTPDGKPLPDTAVRNGRPDCTRTGKSHARRRSSIRGQRNKKSCTRTDRALFNGNLIKIFNGEYERMRSEASGLATESKIVAEWKFRELDRDKSDSLQKSEYRGLRKLIKKVVKPKRCARAWARGCDGNGDGEIARAEWTACLLANPEPPTPDYEDSGPEVEPDYEEEPPPDPSSVLPGMRNSFAPDGSDSDSRREDEANDCSTDRQAVLDEQKAGGAALYVPECTGDGRYARAQCYRSTGYCWCVHQDTGKPIPGSSVKDRRPDCDAAPQHASPMRGCPEPTKAAFLKELRSFFASRMTASGNGTAPGDMVKWGASREEQAATWTYVMLDKDKDKALERREWKAFHQLINSVDSLRKCGRKLPRYCDVNHDSKISITEWMACLEVTQVSQGQTTEVTKLPPNPRRKGPNPLESILKADD

Uniprot

A0A2A4JD14   A0A2A4JEN2   A0A194PEZ3   A0A194QLX5   A0A212F9P3   A0A1E1WA89   + More
A0A0L7LA49   A0A2H1V441   A0A1L8DJ19   A0A1B6EF37   A0A1B6DXS0   A7URB9   A0A088ANS6   A0A2J7QJ96   A0A026WZS1   A0A1A9VDD3   A0A1B6GD72   A0A195EXM2   A0A1B6ENY2   A0A2J7QJ77   A0A1B6GSX9   A0A195CB94   W5JRQ3   E9IN52   A0A158NSP5   A0A151X167   W8C907   A0A1I8PCA8   A0A1I8MYH4   J9JKP6   K7ISR2   A0A1I8PCB1   A0A1I8MYH2   E2BSJ1   T1PL21   A0A0K8SF88   A0A0A9WL66   A0A067QRJ9   A0A1Y1MS83   A0A2S2NXC7   A0A2A3E1Q9   A0A1B6HQ37   A0A2H8TED8   A0A034V764   A0A1B6H6X2   F4W895   A0A182MNS2   A0A2J7QJB0   A0A2J7QJ80   A0A2J7QJ79   A0A224XRH0   A0A310SH30   D6WDX6   A0A0R3NMD2   B4KM40   E0W3N4   A0A3B0JR43   A0A0Q9W677   A0A2P8YMN6   A0A0P8ZN92   A0A0P8YAS1   A0A0R1DS26   A4UZB1   Q86MK1   A0A0J9R9C9   A0A1W4V095   A0A182HDX6   A0A0P9BXC8   N6UBA7   B3MD21   A0A087TD50   A0A0P5CHI6   A0A0P5M3M5   A0A0P5QZR0   A0A0P5UF20   A0A0P5BKI5   A0A0P6IME0   A0A0N8CJR9   A0A0V1IMX1   A0A0V1E1S5   A0A0P5JNB8   A0A0V1HMV7   A0A0V1HMG8   A0A0P5PBG0   A0A0N8DLH4   A0A0V1MWW8   A0A0P5BSF5   A0A1S3HK04   A0A1S3HIL6   A0A0V0X2D1   A0A1S3HJZ9   A0A0V1CMS5   A0A0V1PAJ1   A0A0V1PA73  

Pubmed

26354079    22118469    26227816    12364791    14747013    17210077    + More
24508170    30249741    20920257    23761445    21282665    21347285    24495485    25315136    20075255    20798317    25401762    24845553    28004739    25348373    21719571    18362917    19820115    15632085    17994087    20566863    29403074    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    22936249    26483478    23537049   

EMBL

NWSH01001866    PCG69861.1    PCG69862.1    KQ459605    KPI91936.1    KQ461196    + More
KPJ06364.1    AGBW02009564    OWR50451.1    GDQN01007161    JAT83893.1    JTDY01002034    KOB72269.1    ODYU01000580    SOQ35610.1    GFDF01007615    JAV06469.1    GEDC01000778    JAS36520.1    GEDC01006841    JAS30457.1    AAAB01008807    EDO64561.1    NEVH01013559    PNF28650.1    KK107063    QOIP01000005    EZA61241.1    RLU23159.1    GECZ01009403    JAS60366.1    KQ981948    KYN32629.1    GECZ01030133    JAS39636.1    PNF28645.1    GECZ01004215    JAS65554.1    KQ978023    KYM97970.1    ADMH02000549    ETN65963.1    GL764272    EFZ18016.1    ADTU01025095    ADTU01025096    ADTU01025097    KQ982608    KYQ53924.1    GAMC01007051    JAB99504.1    ABLF02031028    ABLF02031030    ABLF02031035    ABLF02049653    AAZX01002897    AAZX01005023    GL450240    EFN81324.1    KA648658    AFP63287.1    GBRD01013865    JAG51961.1    GBHO01034422    JAG09182.1    KK853417    KDR07744.1    GEZM01023110    JAV88582.1    GGMR01009206    MBY21825.1    KZ288462    PBC25464.1    GECU01030922    JAS76784.1    GFXV01000661    MBW12466.1    GAKP01021569    JAC37383.1    GECU01037260    JAS70446.1    GL887898    EGI69590.1    AXCM01001596    PNF28649.1    PNF28644.1    PNF28648.1    GFTR01005857    JAW10569.1    KQ769940    OAD52742.1    KQ971324    EFA01198.2    CM000071    KRT02034.1    CH933808    EDW08704.2    DS235882    EEB20240.1    OUUW01000001    SPP73618.1    CH940648    KRF80506.1    PYGN01000487    PSN45518.1    CH902619    KPU76159.1    KPU76157.1    CM000157    KRJ98562.1    AE013599    AAM71054.2    AY242076    AAO85264.1    CM002911    KMY92661.1    KMY92664.1    JXUM01034899    KQ561040    KXJ79925.1    KPU76158.1    APGK01030352    APGK01030353    KB740770    KB632132    ENN79000.1    ERL89004.1    EDV36336.1    KK114665    KFM63039.1    GDIP01174175    JAJ49227.1    GDIQ01238492    GDIQ01163928    JAK87797.1    GDIQ01113337    JAL38389.1    GDIP01131072    JAL72642.1    GDIP01183764    JAJ39638.1    GDIQ01019473    JAN75264.1    GDIP01124895    JAL78819.1    JYDS01000130    KRZ24033.1    JYDR01000127    KRY67792.1    GDIQ01202447    JAK49278.1    JYDP01000048    KRZ11599.1    KRZ11601.1    GDIQ01133172    JAL18554.1    GDIP01022055    JAM81660.1    JYDO01000030    KRZ76244.1    GDIP01185074    JAJ38328.1    JYDK01000023    KRX82194.1    JYDI01000145    KRY50613.1    JYDM01000028    KRZ93160.1    KRZ93162.1   

Proteomes

UP000218220    UP000053268    UP000053240    UP000007151    UP000037510    UP000007062    + More
UP000005203    UP000235965    UP000053097    UP000279307    UP000078200    UP000078541    UP000078542    UP000000673    UP000005205    UP000075809    UP000095300    UP000095301    UP000007819    UP000002358    UP000008237    UP000027135    UP000242457    UP000007755    UP000075883    UP000007266    UP000001819    UP000009192    UP000009046    UP000268350    UP000008792    UP000245037    UP000007801    UP000002282    UP000000803    UP000192221    UP000069940    UP000249989    UP000019118    UP000030742    UP000054359    UP000054805    UP000054632    UP000055024    UP000054843    UP000085678    UP000054673    UP000054653    UP000054924   

PRIDE

Q86MK1   

Pfam

PF00086   Thyroglobulin_1        + More
PF10591   SPARC_Ca_bdg
PF07648   Kazal_2
PF00050   Kazal_1
PF12366   Casc1
PF15927   Casc1_N

Interpro

IPR011992   EF-hand-dom_pair        + More
IPR019577   SPARC/Testican_Ca-bd-dom       
IPR002350   Kazal_dom       
IPR000716   Thyroglobulin_1       
IPR018247   EF_Hand_1_Ca_BS       
IPR036857   Thyroglobulin_1_sf       
IPR036058   Kazal_dom_sf       
IPR002048   EF_hand_dom       
IPR023247   Casc1       
IPR031826   Casc1_N       
IPR022110   Casc1_domain       

SUPFAM

SSF100895   SSF100895        + More
SSF47473   SSF47473       
SSF57610   SSF57610       

Gene 3D

4.10.800.10    

CDD

cd00191  TY

ProteinModelPortal

A0A2A4JD14   A0A2A4JEN2   A0A194PEZ3   A0A194QLX5   A0A212F9P3   A0A1E1WA89   + More
A0A0L7LA49   A0A2H1V441   A0A1L8DJ19   A0A1B6EF37   A0A1B6DXS0   A7URB9   A0A088ANS6   A0A2J7QJ96   A0A026WZS1   A0A1A9VDD3   A0A1B6GD72   A0A195EXM2   A0A1B6ENY2   A0A2J7QJ77   A0A1B6GSX9   A0A195CB94   W5JRQ3   E9IN52   A0A158NSP5   A0A151X167   W8C907   A0A1I8PCA8   A0A1I8MYH4   J9JKP6   K7ISR2   A0A1I8PCB1   A0A1I8MYH2   E2BSJ1   T1PL21   A0A0K8SF88   A0A0A9WL66   A0A067QRJ9   A0A1Y1MS83   A0A2S2NXC7   A0A2A3E1Q9   A0A1B6HQ37   A0A2H8TED8   A0A034V764   A0A1B6H6X2   F4W895   A0A182MNS2   A0A2J7QJB0   A0A2J7QJ80   A0A2J7QJ79   A0A224XRH0   A0A310SH30   D6WDX6   A0A0R3NMD2   B4KM40   E0W3N4   A0A3B0JR43   A0A0Q9W677   A0A2P8YMN6   A0A0P8ZN92   A0A0P8YAS1   A0A0R1DS26   A4UZB1   Q86MK1   A0A0J9R9C9   A0A1W4V095   A0A182HDX6   A0A0P9BXC8   N6UBA7   B3MD21   A0A087TD50   A0A0P5CHI6   A0A0P5M3M5   A0A0P5QZR0   A0A0P5UF20   A0A0P5BKI5   A0A0P6IME0   A0A0N8CJR9   A0A0V1IMX1   A0A0V1E1S5   A0A0P5JNB8   A0A0V1HMV7   A0A0V1HMG8   A0A0P5PBG0   A0A0N8DLH4   A0A0V1MWW8   A0A0P5BSF5   A0A1S3HK04   A0A1S3HIL6   A0A0V0X2D1   A0A1S3HJZ9   A0A0V1CMS5   A0A0V1PAJ1   A0A0V1PA73  

PDB

2DSQ     E-value=0.00466098,     Score=96

KEGG

101736103    no KO assigned | (RefSeq) SPARC-related modular calcium-binding protein 1

GO

GO:0005509   GO:0030513   GO:0030718   GO:0008340   GO:0005576   GO:0043395   GO:0009897   GO:0044719   GO:0030510   GO:0005515   GO:0005578   GO:0007165   GO:0005667   GO:0005737   GO:0003677   GO:0003707   GO:0007169   GO:0016021  

PANTHER

PTHR20929  

SignalP

Position:   1 - 22,         Likelihood:  0.975714

 

 

Length:

560

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.04181

Exp number, first 60 AAs:

1.04115

Total prob of N-in:

0.04966

outside

1  -  560

 

 

Pi

14.675625

Theta

16.81937

Tajima's D

-0.577781

CLR

0.032729

CSRT

0.222238888055597

Interpretation

Uncertain