SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00405
Annotation
olfactory_receptor_1_[Bombyx_mori]
Full name
Odorant receptor      
Location in the cell
Nuclear   Reliability : 0.966
 

Sequence

CDS
ATGATTCAACAATTAATTCAAATATCCATTATATTCGAACTCCTCGGGAGCGTGGCGGATAGAATACCAGACGCAGTGTATCAATTACCTTGGGAATGTATGGATGTGAAGAACAGGAGGGTCGTGTACGGTTTCCTACGAAGGACACAGAATCCCGTACGATTCAAAGCAATGGGTATGCTCGACGTTGGAGTACAGACGATGGCGAGTATATTAAAGACATCTATTTCATATTTCGTGATGCTTCGAACGGTGGCAACATAA
Protein
MIQQLIQISIIFELLGSVADRIPDAVYQLPWECMDVKNRRVVYGFLRRTQNPVRFKAMGMLDVGVQTMASILKTSISYFVMLRTVAT

Summary

Similarity
Belongs to the insect chemoreceptor superfamily. Heteromeric odorant receptor channel (TC 1.A.69) family.
EMBL
AB059431    BAD69584.1    AJ874106    CAI43910.1    GQ246496    ACT34880.1    + More
AB101293    BAD69586.1    AB186506    BAD89568.1    HM751833    ADT80765.1    HM751837    ADT80769.1    KY399262    AQQ73493.1    FN556592    CBH19583.1    KX655954    AOG12903.1    KX084459    ARO76414.1    KJ542669    AJD81553.1    KY283637    AST36296.1    KJ542667    AJD81551.1    DQ991148    ABK27842.1    GQ165721    ACS45307.1    KC538876    AGK43824.1    AJ748331    CAG38117.1    AB263116    BAG71420.1    KJ420588    AFC91713.2    FJ393455    ACJ12370.1    AB263206    BAG71424.1    GQ165718    ACS45304.1    KF768667    AIG51861.1    KC526968    AGS41444.1    KF768670    AIG51864.1    KF768669    AIG51863.1    FN556591    CBH19582.1    KY660033    AUY55138.1    NWSH01000007    PCG80965.1    GQ165720    ACS45306.1    AB186507    BAD89569.1    KR935711    ALM26203.1    GQ165723    ACS45309.1    EU818705    ACF32964.1    KC526967    AGS41443.1    JX982530    AGK90005.1    AJ487481    CAD31948.1    AJ748329    CAG38115.1    ODYU01000580    SOQ35608.1    KY660038    AUY55143.1    KF856285    AHI44516.1    AJ874109    CAI43913.1    EU979117    ACL81182.1    KX655970    AOG12919.1    KF768660    AIG51854.1    JX982525    AGK90000.1    AJ748328    CAG38114.1    HM595405    LN885099    ADM32897.1    CUQ99388.1    PCG80967.1    PCG80966.1    KC188669    AGI96751.1    KC960468    AGY14579.2    KY283587    AST36247.1    KC188668    AGI96750.1    JN835269    AEY84942.2    KY660035    AUY55140.1    KY660037    AUY55142.1    KJ830837    AB596042    AIZ94617.1    BAJ61928.1    KJ542670    AJD81554.1    AJ748330    CAG38116.1    JX910527    AGG91644.1    ODYU01006989    SOQ49333.1    KC960476    AGY14587.2    KC299918    AGH58121.1    AB508293    BAI66604.1    AB508292    BAI66603.1    KM892369    AJF23784.1    AB263110    BAG71414.1    EU979116    ACL81181.1    KF768703    AIG51897.1    JN169136    AFK30397.1    LC002698    BAR43446.1    KC526969    AGS41445.1    KC299919    AGH58122.1    JX982544    AGK90019.1    KT588100    AOE48010.1    KC526971    AGS41447.1    MF431269    AXJ21642.1    AJ874108    CAI43912.1    AB263113    BAG71417.1    AB186509    BAG12808.1    KR935700    ALM26192.1    KC526970    AGS41446.1    JN169137    AFK30398.1    JX173648    AFP54146.1    KT588101    AOE48011.1    JX982539    AGK90014.1    GENK01000049    JAV45864.1    KY660036    AUY55141.1    KJ830838    AIZ94618.1    SOQ49332.1    KT588098    AOE48008.1    KR935707    ALM26199.1    SOQ49330.1    KJ592711    AJF20961.1    JX982531    AGK90006.1    GQ844879    ADB89181.1    BK005919    DAA05969.1    KJ577702    AJG42377.1   
Pfam
PF02949   7tm_6
Interpro
IPR004117   7tm6_olfct_rcpt       

Ontologies

Topology

Subcellular location
Cell membrane  
Length:
87
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
6.62978
Exp number, first 60 AAs:
0.28917
Total prob of N-in:
0.28157
outside
1  -  87
 
 

Population Genetic Test Statistics

Pi
15.178263
Theta
18.21844
Tajima's D
-0.897495
CLR
0.081257
CSRT
0.155292235388231
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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