Gene

KWMTBOMO00399

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_circadian_locomoter_output_cycles_protein_kaput_[Bombyx_mori]

Location

Bomo_Chr1(-):11761670-11765842      View in EpiBrowser

Transcription factor

bHLH

Location in the cell

Nuclear   Reliability : 2.898

CDS

ATGGAAGACGACGGAGACGACAAAGATGATACTAAGAGGAGGACTCGTAACTTGAGTGAAAAAAAGCGACGGGATCAGTTTAATATGCTGGTCAATGAGCTTAGTTCAATGGTCTCAACGAACAACAGGAAGATGGATAAATCTACAGTACTCAAGTCTACAATATCCTTCCTGAAAAACCATAATGAAATAACAGTAAGATCTCGAGCACATGACATACAAGAAGATTGGAAACCAACTTTCCTATCAAATGAAGAGTTTACATACTTGGTTCTTGAAGCGTTAGAAGGATTTGTCATGGTTTTTTCTGCGTCAGGTCGAATCTACTACGTCTCCGAAAGCATTAAATCTCTTCTTGGTTACAATCCAACTGAAATTCTCAATAAGAGCATATTTGATTTGACGTTTGAAGAGGATCGCCCTAATTTATATAACATTCTACAGAACACAAATACCCCGAATCCCAAAGGTAAGTTTTCATTCAACCTCACTATTTAA

Protein

MEDDGDDKDDTKRRTRNLSEKKRRDQFNMLVNELSSMVSTNNRKMDKSTVLKSTISFLKNHNEITVRSRAHDIQEDWKPTFLSNEEFTYLVLEALEGFVMVFSASGRIYYVSESIKSLLGYNPTEILNKSIFDLTFEEDRPNLYNILQNTNTPNPKGKFSFNLTI

Uniprot

A0A2H1VR20   A0A1E1WCW9   A0A2W1BNQ5   G0YQM3   A0A1V0EMB5   A0A212EGJ4   + More
A0A0N7BAL6   Q3ZTR5   A0A1E1WUU5   A0A2A4IWA8   A0A194PGW1   A0A194QLE2   Q6VRU6   A0A2J7QFH5   E0D6T2   L8B0S6   A0A1B0GJJ1   E2C765   A0A151WTM8   A0A336KII5   A0A068Q7V1   A0A310SLY2   A0A0L7RH10   A0A195BTA5   A0A0H4BGL7   A0A195FJ10   F4WUR0   L7Y4E9   A0A0M9A7L2   A0A195DM36   A0A158P2D5   A0A195D379   A0A2A3EIL5   A0A088A9H3   A0A3L8E090   A0A1B0D5T7   A0A1L8DH51   A0A1L8DGZ4   A0A154PGQ5   E2AY34   B0W3Y0   A0A0J7L871   A0A1L5YQJ2   A0A232EFE1   E0VT39   A0A182L2Y8   A0A182U1Q0   A0A182FCB7   H7CI07   U5EHU6   A0A182WKT4   A0A1B6CYF0   A0A1S4FWV2   Q16LQ2   A9XCF0   A0A2M3ZFQ8   N6UMH2   U4U4S1   A0A182PMI9   A0A182XMS6   A0A182Q7X5   A0A182VHW3   A0A182LWI6   A0A0F7DCF2   K7JC66   D6WIQ8   A0A182HWN3   Q7Q6R8   A0A182NIR3   A0A182YD49   A0A1Y1M421   A0A182RZS8   A0A084WA50   A0A182KDN3   A0A182IKV4   R4WQ03   A0A1J1I6S5   A0A2M4BB90   A0A2M4A2Y8   A0A2M4BB67   W5JIJ2   A0A1Q3G4C9   A0A1Q3G4C5   A0A2M3YYP5   A0A2M4A4J9   T1HDJ0   A0A1Q3G490   A0A1Q3G4K0   A0A023FAB5   A0A182H8U9   A0A146LMC7   A0A0K8SX26   A0A0A9W299   A0A1B0YYT9   E9IE69   A0A2S0X9U7   A0A0A1XCF3   Q2KPA5   D2Z1J8  

Pubmed

28756777    22118469    16332522    26354079    12869551    20416313    + More
23223372    20798317    21719571    23152747    21347285    30249741    28648823    20566863    20966253    17510324    23537049    20075255    18362917    19820115    12364791    14747013    17210077    25244985    28004739    24438588    23691247    20920257    23761445    25474469    26483478    26823975    25401762    27341138    21282665    29655930    25830018    16271708   

EMBL

ODYU01003912    SOQ43260.1    GDQN01006212    JAT84842.1    KZ149977    PZC75911.1    + More
HQ731032    AEJ38222.1    KY446807    ARB18436.1    AGBW02015069    OWR40606.1    KM233158    AKC42319.1    AY364477    AAR13011.1    GDQN01000264    JAT90790.1    NWSH01006407    PCG63462.1    KQ459605    KPI91944.1    KQ461196    KPJ06357.1    AY330486    AAR14936.1    NEVH01015298    PNF27334.1    AB550828    BAJ16353.1    AB738083    BAM76759.1    AJWK01021846    GL453340    EFN76178.1    KQ982753    KYQ51193.1    UFQS01000473    UFQT01000473    SSX04269.1    SSX24634.1    AB894249    BAP15889.1    KQ759885    OAD62154.1    KQ414594    KOC70150.1    KQ976408    KYM91193.1    KR706373    AKN63486.1    KQ981523    KYN40252.1    GL888375    EGI62057.1    JX948388    AGD94516.1    KQ435730    KOX77563.1    KQ980734    KYN13948.1    ADTU01007159    KQ976885    KYN07352.1    KZ288254    PBC30841.1    QOIP01000002    RLU25795.1    AJVK01000345    AJVK01000346    GFDF01008394    JAV05690.1    GFDF01008393    JAV05691.1    KQ434900    KZC11045.1    GL443762    EFN61630.1    DS231833    EDS32277.1    LBMM01000329    KMR01088.1    KX602314    APP94023.1    NNAY01005041    OXU17076.1    DS235759    EEB16545.1    AB704408    BAL72807.1    GANO01002879    JAB56992.1    GEDC01018854    JAS18444.1    CH477897    EAT35264.1    EF174303    ABO86537.1    GGFM01006509    MBW27260.1    APGK01026653    KB740635    KB631539    ENN79917.1    ERL84364.1    KB632107    ERL88874.1    AXCN02000420    AXCM01004081    KP147912    AKG92749.1    AAZX01001489    KQ971321    EFA01240.2    APCN01001511    AAAB01008960    EAA11642.4    GEZM01041677    JAV80231.1    ATLV01022043    KE525327    KFB47094.1    AK417766    BAN20981.1    CVRI01000043    CRK95960.1    GGFJ01001156    MBW50297.1    GGFK01001852    MBW35173.1    GGFJ01001142    MBW50283.1    ADMH02001414    ETN62614.1    GFDL01000388    JAV34657.1    GFDL01000383    JAV34662.1    GGFM01000629    MBW21380.1    GGFK01002247    MBW35568.1    ACPB03010898    GFDL01000420    JAV34625.1    GFDL01000315    JAV34730.1    GBBI01000290    JAC18422.1    JXUM01029554    KQ560856    KXJ80615.1    GDHC01009551    JAQ09078.1    GBRD01008110    JAG57711.1    GBHO01044614    JAF98989.1    KX014718    ANO53967.1    GL762558    EFZ21134.1    MG280775    AWC08577.1    GBXI01005665    JAD08627.1    AY842303    AAX44045.1    AB543754    BAI67740.1   

Proteomes

UP000007151    UP000218220    UP000053268    UP000053240    UP000235965    UP000092461    + More
UP000008237    UP000075809    UP000053825    UP000078540    UP000078541    UP000007755    UP000053105    UP000078492    UP000005205    UP000078542    UP000242457    UP000005203    UP000279307    UP000092462    UP000076502    UP000000311    UP000002320    UP000036403    UP000215335    UP000009046    UP000075882    UP000075902    UP000069272    UP000075920    UP000008820    UP000019118    UP000030742    UP000075885    UP000076407    UP000075886    UP000075903    UP000075883    UP000002358    UP000007266    UP000075840    UP000007062    UP000075884    UP000076408    UP000075900    UP000030765    UP000075881    UP000075880    UP000183832    UP000000673    UP000015103    UP000069940    UP000249989   

Pfam

PF00989   PAS        + More
PF00010   HLH
PF08447   PAS_3

Interpro

IPR011598   bHLH_dom        + More
IPR000014   PAS       
IPR001067   Nuc_translocat       
IPR036638   HLH_DNA-bd_sf       
IPR013767   PAS_fold       
IPR035965   PAS-like_dom_sf       
IPR001610   PAC       
IPR013655   PAS_fold_3       
IPR001810   F-box_dom       

SUPFAM

SSF55785   SSF55785        + More
SSF47459   SSF47459       

Gene 3D

4.10.280.10    

CDD

cd00083  HLH
cd00130  PAS

ProteinModelPortal

A0A2H1VR20   A0A1E1WCW9   A0A2W1BNQ5   G0YQM3   A0A1V0EMB5   A0A212EGJ4   + More
A0A0N7BAL6   Q3ZTR5   A0A1E1WUU5   A0A2A4IWA8   A0A194PGW1   A0A194QLE2   Q6VRU6   A0A2J7QFH5   E0D6T2   L8B0S6   A0A1B0GJJ1   E2C765   A0A151WTM8   A0A336KII5   A0A068Q7V1   A0A310SLY2   A0A0L7RH10   A0A195BTA5   A0A0H4BGL7   A0A195FJ10   F4WUR0   L7Y4E9   A0A0M9A7L2   A0A195DM36   A0A158P2D5   A0A195D379   A0A2A3EIL5   A0A088A9H3   A0A3L8E090   A0A1B0D5T7   A0A1L8DH51   A0A1L8DGZ4   A0A154PGQ5   E2AY34   B0W3Y0   A0A0J7L871   A0A1L5YQJ2   A0A232EFE1   E0VT39   A0A182L2Y8   A0A182U1Q0   A0A182FCB7   H7CI07   U5EHU6   A0A182WKT4   A0A1B6CYF0   A0A1S4FWV2   Q16LQ2   A9XCF0   A0A2M3ZFQ8   N6UMH2   U4U4S1   A0A182PMI9   A0A182XMS6   A0A182Q7X5   A0A182VHW3   A0A182LWI6   A0A0F7DCF2   K7JC66   D6WIQ8   A0A182HWN3   Q7Q6R8   A0A182NIR3   A0A182YD49   A0A1Y1M421   A0A182RZS8   A0A084WA50   A0A182KDN3   A0A182IKV4   R4WQ03   A0A1J1I6S5   A0A2M4BB90   A0A2M4A2Y8   A0A2M4BB67   W5JIJ2   A0A1Q3G4C9   A0A1Q3G4C5   A0A2M3YYP5   A0A2M4A4J9   T1HDJ0   A0A1Q3G490   A0A1Q3G4K0   A0A023FAB5   A0A182H8U9   A0A146LMC7   A0A0K8SX26   A0A0A9W299   A0A1B0YYT9   E9IE69   A0A2S0X9U7   A0A0A1XCF3   Q2KPA5   D2Z1J8  

PDB

4F3L     E-value=1.44415e-35,     Score=369

KEGG

101735840    K02223 circadian locomoter output cycles kaput protein [EC:2.3.1.48] | (RefSeq) circadian locomoter

PATHWAY

04711    Circadian rhythm - fly - Bombyx mori (domestic silkworm)

GO

GO:0046983   GO:0005634   GO:0005737   GO:0003700   GO:0005667   GO:0003677   GO:0006355   GO:0003707   GO:0007169   GO:0016021  

Subcellular location

Nucleus  

Length:

165

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

5.20316

Exp number, first 60 AAs:

0.00036

Total prob of N-in:

0.19086

outside

1  -  165

 

 

Pi

1.631529

Theta

7.537294

Tajima's D

-2.479653

CLR

0.180736

CSRT

0.000349982500874956

Interpretation

Uncertain