Silkworm Genome Informatics Database

Gene

KWMTBOMO00398

Pre Gene Modal

BGIBMGA000498

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_circadian_locomoter_output_cycles_protein_kaput_[Bombyx_mori]

Location

Bomo_Chr1(-):11725218-11750112 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.64

CDS

ATGGATCATAATGATAATGATGATTCGTCCGGATATCAACAAGATCCTGATTCAAGGTTGCTGTTCGTTTGCACCGGTCGTCTGTTCACACCTCATTTGATACGCGACGTAACTTTGGTCGACTCGAACCGCAGCGAGTTCACTTCCCGGCACAGCCTCGAATGGAAGTTCCTGTTTCTGGATCACCGCGCTCCTCCGATCATCGGTTATCTGCCGTTCGAAGTGCTCGGAACATCTGGATACGACTACTATCATTTCGACGATCTGGAAAAGGTTGTGACCTGCCACGAGGCATTGATGCAGAAAGGTGAACTCACATCCTGCTACTATCGATTCCTGACGAAAGGTCAACAGTGGATTTGGCTTCAGACTCGTTTCTACATCACTTATCATCAATGGAACTCGAAACCGGAGTTTGTCGTATGCACTCATCGAGTTATTAGCAATGCTGACATCGCCAAAAACGCCAAGCAAGAAAGCGCCGAACCTGACAACGTGAGTGAGGCGGACGCCAGCCACGGGACTATAAAAGATGCCCCTTCGGAAGAGAATAATCTGATGGTCATGTCGCCATCGTACATGTCCGACGCTAGTGACGCCTTCACAAACTCCTATCACAGGACGTCTCAGCCACCGTCCGTGAAGTCCGCGTCGGCTTCGTGCGCCTCCGGTGGTGCTAATAGTGGGACCGCCCCGCCCTCTACCACAGCGTGGCAGCATTCGTCGAACACTCGCTTCGCCCGTTCCGACACCACATCGGCGTCCGGGGAGTCTAGGTCGTCTCAGAGGAACAACTCGCACGAGCTGGCGCACGGTGGGGTCGCGAACGTTAACGAACATCCGTGTTACGGTAGCATGATGTTCCCGCAGTCGTACAAAGCGGGTTCGGAACCGGCTCTGGTACCGCAACACGGCATCGGGGCTCAGTATCTAGAGCCGGACCCCTACGTAAGTGCGGTCAGTCTGCCCGGCGTTCTGCCTTTACCTTTGCCGCCTCTACCGATCATCGTGTCCCCCGATCAGGCTCAGATACAGTTGCAGAGAAAACACGAGGAACTTCAGCAGATGATCTTGAGACAACAAGAGGAGTTGCGACAGGTGAAAGAACAATTACTACTGGCCAGGCTTGGTATACTGCAACCCCTTATAAATGTCCCGAATCCGTACGCGAATACAGAAGAGACACAGCAAATGCAACGTTTGCCGACTCAAAAAGTGTACTACTGCATCGGATAG

Protein

MDHNDNDDSSGYQQDPDSRLLFVCTGRLFTPHLIRDVTLVDSNRSEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHFDDLEKVVTCHEALMQKGELTSCYYRFLTKGQQWIWLQTRFYITYHQWNSKPEFVVCTHRVISNADIAKNAKQESAEPDNVSEADASHGTIKDAPSEENNLMVMSPSYMSDASDAFTNSYHRTSQPPSVKSASASCASGGANSGTAPPSTTAWQHSSNTRFARSDTTSASGESRSSQRNNSHELAHGGVANVNEHPCYGSMMFPQSYKAGSEPALVPQHGIGAQYLEPDPYVSAVSLPGVLPLPLPPLPIIVSPDQAQIQLQRKHEELQQMILRQQEELRQVKEQLLLARLGILQPLINVPNPYANTEETQQMQRLPTQKVYYCIG

Uniprot

A0A2H1WJ17 A0A1V0EMB5 A0A2A4IWA8 A0A0N7BAL6 A0A194PGW1 Q6VRU6 + More
A0A194QLE2 A0A212EGJ4 Q3ZTR5 A0A0H4BGL7 A0A182VHW3 A0A1B0D5T7 A0A1L8DH51 A0A182L2Y8 A0A1L8DGZ4 A0A182LWI6 A0A182PMI9 A0A182Q7X5 A0A1B0GJJ1 A0A336KII5 A0A1B6LUC8

Pubmed

26354079 12869551 22118469 16332522 20966253

EMBL

ODYU01008935 SOQ52956.1 KY446807 ARB18436.1 NWSH01006407 PCG63462.1 + More
KM233158 AKC42319.1 KQ459605 KPI91944.1 AY330486 AAR14936.1 KQ461196 KPJ06357.1 AGBW02015069 OWR40606.1 AY364477 AAR13011.1 KR706373 AKN63486.1 AJVK01000345 AJVK01000346 GFDF01008394 JAV05690.1 GFDF01008393 JAV05691.1 AXCM01004081 AXCN02000420 AJWK01021846 UFQS01000473 UFQT01000473 SSX04269.1 SSX24634.1 GEBQ01012702 JAT27275.1

Proteomes

UP000218220 UP000053268 UP000053240 UP000007151 UP000075903 UP000092462 + More
UP000075882 UP000075883 UP000075885 UP000075886 UP000092461

Pfam

PF00010 HLH + More
PF00989 PAS

Interpro

IPR000014   PAS        + More
IPR001610   PAC
IPR035965   PAS-like_dom_sf
IPR011598   bHLH_dom
IPR001067   Nuc_translocat
IPR036638   HLH_DNA-bd_sf
IPR013767   PAS_fold

SUPFAM

SSF55785 SSF55785 + More
SSF47459 SSF47459

Gene 3D

4.10.280.10

CDD

cd00130 PAS
cd00083 HLH

ProteinModelPortal

A0A2H1WJ17 A0A1V0EMB5 A0A2A4IWA8 A0A0N7BAL6 A0A194PGW1 Q6VRU6 + More
A0A194QLE2 A0A212EGJ4 Q3ZTR5 A0A0H4BGL7 A0A182VHW3 A0A1B0D5T7 A0A1L8DH51 A0A182L2Y8 A0A1L8DGZ4 A0A182LWI6 A0A182PMI9 A0A182Q7X5 A0A1B0GJJ1 A0A336KII5 A0A1B6LUC8

PDB

4F3L E-value=1.19712e-56, Score=557

KEGG

101735840 K02223 circadian locomoter output cycles kaput protein [EC:2.3.1.48] | (RefSeq) circadian locomoter

GO

GO:0005667 GO:0003700 GO:0003677 GO:0046983 GO:0005634 GO:0005737

Subcellular location

Nucleus

Length:

411

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.04936

Exp number, first 60 AAs:

0.0079

Total prob of N-in:

0.01742

outside

1 - 411

Pi

2.27333

Theta

23.773141

Tajima's D

-2.007457

CLR

0.08206

CSRT

0.0140992950352482

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics