Silkworm Genome Informatics Database

Gene

KWMTBOMO00383

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr1(+):11382189-11384311 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 2.437

CDS

ATGGACCGTGTTTGTGTGGCATTTTTCTCTACGGCGCAGAGACTTGGACCCTCAAGAAAGCCGACCGCCAACGGGATTCGTTGGACAGAACACAGAACCAACGAATCCATTCTTACCGAGCTCAAGATTCCAATGCACCTCCGCACTACATGCGCGCGGAGGAGTTTCGAGATCTTTGGACATATCGCCAGAAAGAGAGGTGACAATCTGGAAAAGCTGCTGGTAACAGGCAAGGCCGCGGAGAGTGCCACCTGTCGATGCCCATATCGTTGTTGGAGGCGTCCGTATCGGGTCGGGGTGCAGTTGAAGTACCTCGGCCTCATTCTGGACAGTCGTTGGACCTTCCGTGTTCACTTTCAGAACCTGGTCCCTCGTTTGTTGGGGGTGGCCGGCGTGTTAAGCCGGCTTCTTCCCAACATCGGGGGGCCTGACCAGGTGACGTGCCTTATACGAGGCGCCCGCGTGGGGCCAGTCACTGGCCGTGGGGGTAGCGAAGTTGCTGCAACGGCCGCAACGCACCATCGCGGTCAGGATCATCCGTGGTTATCGCACCATCTCTTTCGAGGCGGCGTGTGTACTGGGACGCCGCCTTGGATCCTGGAGGCGGAGGCGCCCGCCGCTGACTATCAGTGGCGGGCTAACCTTCGTGCCCGGGGCGTGGCGCGTCCCAGCCCCGGTGTGGTCAGAGCGCGGAGGGCCCAATCTCGGCGGTCCGTGCTGGAGTCATGGTCCAGGCGGCTGGTCGATCCTTCGGCTGGTCGTAGGACCGTCGAGGCGATTCGCCCGGTTCTTGTGAATTGGGTGAATCGTGACAGAGGACGCCTCACTTTCCGGCTCACGCAGGTACTCATTGGGCATGGTTGCACCGGATCGGAGCCGAGCCGACGGTAG

Protein

MDRVCVAFFSTAQRLGPSRKPTANGIRWTEHRTNESILTELKIPMHLRTTCARRSFEIFGHIARKRGDNLEKLLVTGKAAESATCRCPYRCWRRPYRVGVQLKYLGLILDSRWTFRVHFQNLVPRLLGVAGVLSRLLPNIGGPDQVTCLIRGARVGPVTGRGGSEVAATAATHHRGQDHPWLSHHLFRGGVCTGTPPWILEAEAPAADYQWRANLRARGVARPSPGVVRARRAQSRRSVLESWSRRLVDPSAGRRTVEAIRPVLVNWVNRDRGRLTFRLTQVLIGHGCTGSEPSRR

Uniprot

Q868Q4 A0A2W1B333 A0A2W1BDU5 Q8MY27 O01419 A0A0J7MY07 + More
A0A0J7N1D9 A0A0J7N7H9 A0A0J7KCQ3 A0A0J7KJG6 A0A0J7KF37 A0A0J7KC11 A0A0J7KPR0 A0A0J7JYP2 A0A0J7KIY5 A0A0J7N7S8

Pubmed

12644555 28756777 9092665

EMBL

AB090825 BAC57926.1 KZ150386 PZC71062.1 KZ150308 PZC71477.1 + More
AB078935 BAC06462.1 D85594 BAA19776.1 LBMM01014132 KMQ85305.1 LBMM01012027 KMQ86470.1 LBMM01008861 KMQ88580.1 LBMM01009494 KMQ88097.1 LBMM01006671 KMQ90407.1 LBMM01008448 KMQ88867.1 LBMM01009738 KMQ87908.1 LBMM01004634 KMQ92224.1 LBMM01020849 KMQ83202.1 LBMM01006954 KMQ90166.1 LBMM01008682 KMQ88705.1

Proteomes

UP000036403

PRIDE

Q868Q4 O01419

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF03372   Exo_endo_phos

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf
IPR005135   Endo/exonuclease/phosphatase

SUPFAM

SSF56219 SSF56219

Gene 3D

3.60.10.10

ProteinModelPortal

Q868Q4 A0A2W1B333 A0A2W1BDU5 Q8MY27 O01419 A0A0J7MY07 + More
A0A0J7N1D9 A0A0J7N7H9 A0A0J7KCQ3 A0A0J7KJG6 A0A0J7KF37 A0A0J7KC11 A0A0J7KPR0 A0A0J7JYP2 A0A0J7KIY5 A0A0J7N7S8

KEGG

105842294 no KO assigned | (RefSeq) uncharacterized LOC105842294

GO

GO:0003964

Length:

296

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01479

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02392

outside

1 - 296

Pi

3.661758

Theta

19.889277

Tajima's D

-1.731447

CLR

0

CSRT

0.0338983050847458

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree