SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00382
Pre Gene Modal
BGIBMGA000509
Annotation
polyhomeotic_[Bombyx_mori]
Location
Bomo_Chr1(-):11306499-11360748      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.724
 

Sequence

CDS
ATGGAACGTTGTTCTTATGGTTTTTACACCAAAAGGTCTGAAATCTTAGACAACACGCAAAAAAAGAAAGAACAAGATAAAGAATCCCAGAATTCAAATTACCAACAGCAAATTGTTAAATCAAATGATAAGTCATTACACAGTACAGAACTCCACAATGTTAACGTACCTGTAACTCAGCATGTACCAGCACAACAGTTATTGTCTCCGACACACAGCTCAAATCAGTCTGTGCAATCCAAAGAGGACCAAAAAGATAAAACAATAAAGGTTGCTAATTCAACTACAATAACCTTGATAGAGAACAGTACCTTGAATGGTGATAAAGACAAGGACAGTAATTATCATAAAAACTACTTTACTCTTGAACCCAAAGTGCATGACAAGAAAGATGAGTGTAATAAAAACAGTATTACTATAACTAAGACTGTGCCAAAACAATCTCCAGGGGGTAATAGTCAATTTGATAAATCTAAAACTCAAATAAAACCCACAAAGAGACCATTACAGTGTTTGGAAACACTAGCTGAAAAGGCAGGTATAACTTTTGAAGATAAATATGAAGCAGCAAATACTTTGTTGGCTTTAGACAAACAGAATCTAAACAGAAAACCTGAATTAAAGCAGCCAAAATCTGAACCGGATAATCACAATCAACAAGAAGAATACAGATACCGGAATCAGAAAGAAGAAGATGATAAATTACAGATCCAGCAGCAGATAATACAACAACAACAACAGCAGCAACAACAACAACAACAACAACAACAGCAGCAGCAACAACAACAACAGCAACAACAACAACAACAGCAGCAGCAGCAGCAACTGCAACAGTTGCAGCAACAGCAACTGCAACAGTTGCAACATCAGCAACTGCAGCAATTACAACAACAAGCTCTACAAAGACAACACCAACAAGCTATACAACAGCATTTAAAAAATCAACAAGATCAGCAGGAATTGTTACAGAAGCAGTATCAACAACAGTCTCAACAACAGAAACAAGAATTACTGCAAATAACTCAACAATCGGAACATCAACAGAAATTCTTGCAGCCGGTGCACACGCAGCAGTTCAACGTACCAGGAATAGGAGAGATCAATCTAAGTTTCTTGGCGTCACCACAGAGCAACGTGAACCTGCTTTACGACAAGAACCACAAGCCCGGCATGAGCGGCGAAATCAAACCGCAACAAATAGTAGAGGGTCAACCGCAAGTAGTGCAGCACCAGCTGAGCATGGCGCAACACGAGCCATCGCAGCAACACCACCAGACTGTCACCGTCGTGTCCTCGATGCCCAGCAACATGGCCTCGCACCAGGTACAACAACAACAGACCGGCGGAGGTATTCAGCAGCAATCTAACGCTGGAATAACGACGATGCCGCCCCTACAAAGTTTGCCTTCGAACGCTCAACATCCCCAGCAACTTAGTGCGGAATGGGGTCACAGCCGGGTCCAGGTGATTCAGCAGCCCCTGCCGAACAATGCGTACCTCCAGCAGCTGTACAACACCCAGGGACCGCTACTCATGCCCGGGAACATAGCCTTGCATCCCGGTATCAATTCGCAACAGATTCAGGTAATAGCTGCGGGAAAGCCTTTTCAAGGCAACCAGCTCGGTCCGCACATGTTAACGACGCAGGGCAAACAAGTACTACAGGGCCAAGCAGCGCCCTTCCCCGGGTATACTACAATACCCGCGATCCCGACGACGCAGAATCAAACGTTCGTCTTCAGTTCGAACATACTGCCGGCGCACTCGCAGCCCACCGTGTCCGGAATAACTCAGCAGCAGAAACAATCCGACATGCATAAGTGCGGCGGTAAGGTGACCGGCGGGAAGGTCGCCAACGCTAATGCTGGCGGGAATCAGACTGTTCCCGTTCAAGCTCAGTGCGTCCAGGTGTCGCAGCCGGTACTCAGTGCTCAACAACCTGCGCAGGCGCAGATCATCGGGCCCCTGCAGACCGGTGGACAGACGATGCAGTTCGCGCCGTGGCAGATCTCCGGAGCTCTGCCGCAAGTGTGGGCGGGGGGGCTCCAGGCTGGCACTCTGCCGGCGGGGGGCCTGCTCACCCCCAACCCTATATTCATAAGGGGAACTCAACCGGACGCGCCCCCCTCCATGTTCATACAGCACTCGCCGCAGAACACTGTCCACCACAACAGCGTGAGCGTAGCGTGTGCGACGCCCACTACAGCAAAGCCGCGTGCTTCTGCCGATGGGATTTCGAAGGCTCCCCGTCCGCTATCGAACATCCTGCCCTCTGGTGGGATCAGACCTAACTCAAATGTCTCCACGCAAACGAACGCTAATCAAGCTCAGAACCAGGCAAAGCAGCGCGGCAAGCCAGGCGTGAGGTCTCCAGCTCCAGCTAATAAACAGGATGCGGCCAATCAGACGAACAAAATGCAGCATCAGATCCAACAGCCGAAACAACAATTGTTAGTGATGAACTCGTCCGGTCAGATGGCGCAGATAACGAGCGTGCAAGACAAACAGGCTCTGAACAAGAACCTCCAGCAGCAGGCTTTACTCCAACAACAGATACAACAACAGCAGCAGTCATCGGTTCAACAACAACAGCTGTTGCATCAACAACAAACTCAGCAAATGGTGCAACATTATCAACAGCAAGGAATGACGCTGGGCATGCAACAAGGTACTCAGACTCTGCCCATCGCTGGGATGCCACAAACCATATCAATGGTGCAACAAATACATCCTCTTGGAGCCATGGGTCAAGCCGGTACAATAGTCGGGCAGCTGAACACAACACAGACCGCGCAAAACACTCAGATGACACAAGTTCAAACACTCCAGCAACAACCGCAGACCCTCGTTGGCAATGGATTGGTCCAGACATCTGTCGGGATGGCGGTGCAGCAACAAACCACGCTCAGCCACGCTACCCCCATGCAAGCGCCGGCGATCACGTTAGAGGGCGCCTCGCTGCTGTCCGCTCCCCTCGTTCAAGTTTCACCGGCAATCTTACAACACGAGGGTGCGGTTGGACTTATCGCTGCACCGGTCCAAGGGTCAGTGATGCCGATGCAGACATCGACCGCCATGGTGGCCCACGTCAAGACCGAAGATGATAAATCTCAACAGGCTGCTACACCGGCGCCCGTGCAGCAGATCGCTCCGCAACAGCAGATGGTCGCCGAGTCGACAACGGATGCGGCCGTATCCGCGACGCCAATCATAAGCTCGGCCGCCTCCGTTCCGAACAACACCGCCGCGGTCACGACCGTCACTACGGCCGACGCGTCTATCTCCACCAGCACATGTATGGGGCCACCGCCGCCACCAGACGCGAAGCCGATTTTGTCGAAGAAGGAGATCGTTTCGGTGGCTGACTCAACTCCCTCCTCGGTATCTCCAAGTGTGTCAAACAACTCCACTTCTGTGGCGAGCAGTGCGCAGCAAACGACCCCTATTCTACCGCAGCTGGTGACAACGTCTTCTGTGTCTGCATCCACAATGACTTCGGTGACCACAGCGTCCGTAGCTTCCGGTACATCAACTATGTTCAAGAGCACGCAATGTACTCCGCGTCATATCAGCCAAGCCGCTGCACACGACAAAGGGCTCCCCAAAGCTATGGTGAAGCCGAACATACTGACGCACGTGATAGAAGGATATGTCATCCAGGAGGCGGGAGAACCATTCGCGGTGAACCGACCTCTACGCGAATGGGCTGACAAAGAAGACAAAGAAAACAAACTGCCCAGTTCGGACGAGCCTCCACGTAAAAAGCAGATGCTGGAAGGCGGCGCCAGTTTGCCCCGTATAAGTTCTAGTAACGATAACCACGTCAGCGAATCTTCAACACAAAACGCCAATGTGAAGGCCGAGGCCTCATCTAACGTTGAGATGGCCGACTCTCAACCTACGAGTGCCGACTCTGCACAAGCTAAGATACCTAACGCTAACAAATGGACGGTGGCCGAAGTGTGCGAGTTCATCCGCAACATCCCCGGATGCGCCGGTTACGCTGACGAGTTCCTGATGCAGGAGGTCGACGGTGAGGCGTTACTCCTCATCAAGCCGGAGCACCTCGTTATGGCGCTATCCATGAAGCTCGGACCGGCGCTCAAGATAGTCGCCTGCATCGATTCCCTGCGGCCGGAAAGCGAACAAAACTTACACGATCACGACTAA
Protein
MERCSYGFYTKRSEILDNTQKKKEQDKESQNSNYQQQIVKSNDKSLHSTELHNVNVPVTQHVPAQQLLSPTHSSNQSVQSKEDQKDKTIKVANSTTITLIENSTLNGDKDKDSNYHKNYFTLEPKVHDKKDECNKNSITITKTVPKQSPGGNSQFDKSKTQIKPTKRPLQCLETLAEKAGITFEDKYEAANTLLALDKQNLNRKPELKQPKSEPDNHNQQEEYRYRNQKEEDDKLQIQQQIIQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQLQQLQQQQLQQLQHQQLQQLQQQALQRQHQQAIQQHLKNQQDQQELLQKQYQQQSQQQKQELLQITQQSEHQQKFLQPVHTQQFNVPGIGEINLSFLASPQSNVNLLYDKNHKPGMSGEIKPQQIVEGQPQVVQHQLSMAQHEPSQQHHQTVTVVSSMPSNMASHQVQQQQTGGGIQQQSNAGITTMPPLQSLPSNAQHPQQLSAEWGHSRVQVIQQPLPNNAYLQQLYNTQGPLLMPGNIALHPGINSQQIQVIAAGKPFQGNQLGPHMLTTQGKQVLQGQAAPFPGYTTIPAIPTTQNQTFVFSSNILPAHSQPTVSGITQQQKQSDMHKCGGKVTGGKVANANAGGNQTVPVQAQCVQVSQPVLSAQQPAQAQIIGPLQTGGQTMQFAPWQISGALPQVWAGGLQAGTLPAGGLLTPNPIFIRGTQPDAPPSMFIQHSPQNTVHHNSVSVACATPTTAKPRASADGISKAPRPLSNILPSGGIRPNSNVSTQTNANQAQNQAKQRGKPGVRSPAPANKQDAANQTNKMQHQIQQPKQQLLVMNSSGQMAQITSVQDKQALNKNLQQQALLQQQIQQQQQSSVQQQQLLHQQQTQQMVQHYQQQGMTLGMQQGTQTLPIAGMPQTISMVQQIHPLGAMGQAGTIVGQLNTTQTAQNTQMTQVQTLQQQPQTLVGNGLVQTSVGMAVQQQTTLSHATPMQAPAITLEGASLLSAPLVQVSPAILQHEGAVGLIAAPVQGSVMPMQTSTAMVAHVKTEDDKSQQAATPAPVQQIAPQQQMVAESTTDAAVSATPIISSAASVPNNTAAVTTVTTADASISTSTCMGPPPPPDAKPILSKKEIVSVADSTPSSVSPSVSNNSTSVASSAQQTTPILPQLVTTSSVSASTMTSVTTASVASGTSTMFKSTQCTPRHISQAAAHDKGLPKAMVKPNILTHVIEGYVIQEAGEPFAVNRPLREWADKEDKENKLPSSDEPPRKKQMLEGGASLPRISSSNDNHVSESSTQNANVKAEASSNVEMADSQPTSADSAQAKIPNANKWTVAEVCEFIRNIPGCAGYADEFLMQEVDGEALLLIKPEHLVMALSMKLGPALKIVACIDSLRPESEQNLHDHD

Summary

Uniprot
E5RWY0  
Pubmed
22485166   
EMBL
AB607840    BAJ54074.1   
PRIDE
E5RWY0   
Pfam
PF00536   SAM_1
Interpro
IPR001660   SAM        + More
IPR013761   SAM/pointed_sf       
SUPFAM
SSF47769   SSF47769       
Gene 3D
1.10.150.50    
ProteinModelPortal
E5RWY0  
PDB
1PK1     E-value=1.99685e-15,     Score=206

Ontologies

KEGG
100529124    K11456 polyhomeotic-like protein 1 | (RefSeq) PH; polyhomeotic
GO
GO:0005515   GO:0005634   GO:0006355   GO:0008270   GO:0043565   GO:0043401   GO:0003677   GO:0003707   GO:0007169   GO:0016021  

Topology

Length:
1389
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00599
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00000
outside
1  -  1389
 
 

Population Genetic Test Statistics

Pi
23.032711
Theta
22.690306
Tajima's D
-1.75061
CLR
0.045112
CSRT
0.0309984500774961
Interpretation
Uncertain
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