Gene

KWMTBOMO00381

Pre Gene Modal

BGIBMGA000717

Annotation

PREDICTED:_fibrinogen_C_domain-containing_protein_1-B-like_[Bombyx_mori]

Location

Bomo_Chr1(+):11293409-11298496      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.321

CDS

ATGAACCGTTCTCTTATACTGCTTTATATTGTTCTTTTAACTCTAACCTGTGCTCATCTGGAGGTGAACAGAGATAAGAGAGGAAGACGAAAAAACAATCACGAGGATAAAACATTGTGGAAAGAAGAATACGAAAAAGAATTAACAGACGCCATGCTCTCGTCACGTAGACGTGATAATGTGACGCGAGTTCCACAATCTCCAGGAATAGGTGATAACGAAGCCGTCATTGAGAAGCTTATGGAAACGATCACATCGAGCGAAAAGTATTTTAAAAAAGTTGAAAGCATAGATTTTAGACTTAATAGACTTGATATAGAAATTCACGAAAAAACGAACAGTATCGCTAAACAGTTGGGCGAAATTATGAAAGCCGTCAACTCCGACGCCTACGGGGATAAGTTTGAAACTATTTTGGAAACGATAAAATCGGACGTGAGTCAAATAAAATACAGTCTTCAGATGACTCCGCGGTCGAACAACGCTGGTACTGAGTACCAAACAGATCCGTCCTTAGATACAAAATTATCCGTTTTGGAAAGTAACACGAAAAGCATATTGTCTGGCGTTGAATCAATATTGACGGTAATTTCGGAGGTGAAGAATCGTCAGTATACTAAGCCATTGGCCAGATCTGATATGGTACATCCTAGTTCACGAGAGGCAATATCAATTATAAGCGAATTCAGGAAAAGTCTGCGTGAACATAAAACAAGGAAGTGTGATTGTAGGTCTGAACGAGTGGATCGATCAGAAAGGTATCCAACAGATTGCTTCGAGATACAAATGCAAGGATTTAATGTTTCCGGAATTTATAAAATAAAACCGGATGATATGGACTCATTTTATGTACTTTGTGACCTTTCGACTGCTGGCGGAGGTTGGACAGTGTTCCAAAATCGTTTCGATGGATCACAAGATTTCTACAAAGGATGGTCAGATTATGTGAACGGTTTCGGTAACTTAGCCGGGGAATTTTGGCTTGGACTAGAAAAGGTCAGTTTTCTGACGAACCAAAAACTGTATGAACTACGAATAGAATTAGAAGCTCAAAACGGACCAGAAGTGTTTGCAAGTTATTCTGTTTTTACTGTGGGACCTGAAGAGGAAGGCTACCGGATTAGCACACTTGGAACATACTATGGAACAGCAGGAGATTCACTGTCATATCACGCTGGTCAAAAGTTTTCTACCTTTGATGTGGACAACGACGAATGGAAAGATGGCTCTTGCGCTCAGGAGCACGGCGGAGCTTGGTGGTACAAAGAATGCGACAAGAGCAATTTGAATGGAAAATATTCGACTACAACTGAAGAAAACAAAGGACAATCCATCTATTGGATATCCTTTAAGGTTCCGAATTATCCCCTGTCAAAGACGAAGATGATGATCAGGCCGCTGCCAGCGAAAAGACCGACCGACTTTATTGACAATAGTAGGAAAATTTCAGATGGTTCCAAAAAGAAACCTCTTCCCGAGAAACAATCTCGGGTCAAAGATATGAAGACTAAATATGACGTGAAGCACAATCATCCCATGTATCGTTACGACGAACACACGCACAGTGACGCGTTCTTCCCTAATTACGCCTGA

Protein

MNRSLILLYIVLLTLTCAHLEVNRDKRGRRKNNHEDKTLWKEEYEKELTDAMLSSRRRDNVTRVPQSPGIGDNEAVIEKLMETITSSEKYFKKVESIDFRLNRLDIEIHEKTNSIAKQLGEIMKAVNSDAYGDKFETILETIKSDVSQIKYSLQMTPRSNNAGTEYQTDPSLDTKLSVLESNTKSILSGVESILTVISEVKNRQYTKPLARSDMVHPSSREAISIISEFRKSLREHKTRKCDCRSERVDRSERYPTDCFEIQMQGFNVSGIYKIKPDDMDSFYVLCDLSTAGGGWTVFQNRFDGSQDFYKGWSDYVNGFGNLAGEFWLGLEKVSFLTNQKLYELRIELEAQNGPEVFASYSVFTVGPEEEGYRISTLGTYYGTAGDSLSYHAGQKFSTFDVDNDEWKDGSCAQEHGGAWWYKECDKSNLNGKYSTTTEENKGQSIYWISFKVPNYPLSKTKMMIRPLPAKRPTDFIDNSRKISDGSKKKPLPEKQSRVKDMKTKYDVKHNHPMYRYDEHTHSDAFFPNYA

Uniprot

H9ITY7   A0A194PF12   A0A194QLA4   A0A2A4J211   A0A2H1V0A4   A0A212EGK5   + More
A0A067QMF5   A0A2J7Q890   A0A2P8YQV9   A0A2J7Q882   A0A139WMA6   T1IRG7   A0A386H798   E9FVU4   A0A1Y1L3J5   A0A0P5W8C2   A0A0P5T6L4   A0A0P4YQ14   A0A0P5HB22   A0A0N7ZPE4   A0A0P4YCA5   A0A0P5T6N9   A0A0N8AYY4   A0A0P5WQ72   A0A0P5MR04   A0A0P5KMX5   A0A0N8D6N1   A0A0P5TL18   A0A1Y1L5S3   A0A0P5DKF5   A0A0P5IS82   A0A336LRA7   A0A1W4WIT3   A0A0P6E309   A0A1L8E304   A0A1L8E3D9   A0A0P5GJ31   A0A336K654   A0A0P6E3X0   A0A1B0DD80   A0A0K8UEA2   A0A0K8VGN5   A0A034VT34   A0A0K8U989   A0A1B0CUQ1   W8AKJ4   W8AWQ6  

Pubmed

19121390    26354079    22118469    24845553    29403074    18362917    + More
19820115    21292972    28004739    25348373    24495485   

EMBL

BABH01007180    KQ459605    KPI91956.1    KQ461196    KPJ06343.1    NWSH01004030    + More
PCG65554.1    ODYU01000092    SOQ34280.1    AGBW02015069    OWR40611.1    KK853169    KDR10365.1    NEVH01016968    PNF24789.1    PYGN01000422    PSN46646.1    PNF24788.1    KQ971318    KYB28957.1    JH431361    MG452694    AYD41581.1    GL732525    EFX89042.1    GEZM01066131    JAV68154.1    GDIP01089800    JAM13915.1    GDIP01130242    JAL73472.1    GDIP01225584    JAI97817.1    GDIQ01252350    JAJ99374.1    GDIP01225585    GDIP01161526    JAI97816.1    GDIP01229530    LRGB01002849    JAI93871.1    KZS06025.1    GDIP01130243    JAL73471.1    GDIQ01229187    JAK22538.1    GDIP01095798    JAM07917.1    GDIQ01164022    JAK87703.1    GDIQ01189205    JAK62520.1    GDIP01063599    JAM40116.1    GDIP01130241    JAL73473.1    GEZM01066134    GEZM01066130    JAV68151.1    GDIP01158294    JAJ65108.1    GDIQ01211193    JAK40532.1    UFQS01000086    UFQT01000086    SSW99099.1    SSX19481.1    GDIQ01068864    JAN25873.1    GFDF01001070    JAV13014.1    GFDF01001069    JAV13015.1    GDIQ01240833    JAK10892.1    SSW99098.1    SSX19480.1    GDIQ01068865    JAN25872.1    AJVK01031746    GDHF01027312    JAI25002.1    GDHF01014296    JAI38018.1    GAKP01013696    GAKP01013695    JAC45257.1    GDHF01029404    GDHF01015645    JAI22910.1    JAI36669.1    AJWK01029546    AJWK01029547    AJWK01029548    AJWK01029549    AJWK01029550    GAMC01021307    GAMC01021305    JAB85248.1    GAMC01021311    GAMC01021309    JAB85246.1   

Proteomes

UP000005204    UP000053268    UP000053240    UP000218220    UP000007151    UP000027135    + More
UP000235965    UP000245037    UP000007266    UP000000305    UP000076858    UP000192223    UP000092462    UP000092461   

PRIDE

H9ITY7   

Pfam

PF00147   Fibrinogen_C        + More
PF07776   zf-AD
PF00096   zf-C2H2

Interpro

IPR002181   Fibrinogen_a/b/g_C_dom        + More
IPR020837   Fibrinogen_CS       
IPR036056   Fibrinogen-like_C       
IPR014716   Fibrinogen_a/b/g_C_1       
IPR036236   Znf_C2H2_sf       
IPR013087   Znf_C2H2_type       
IPR012934   Znf_AD       
IPR014715   Fibrinogen_a/b/g_C_2       

SUPFAM

SSF56496   SSF56496        + More
SSF57667   SSF57667       

Gene 3D

3.90.215.10     4.10.530.10    

CDD

cd00087  FReD

ProteinModelPortal

H9ITY7   A0A194PF12   A0A194QLA4   A0A2A4J211   A0A2H1V0A4   A0A212EGK5   + More
A0A067QMF5   A0A2J7Q890   A0A2P8YQV9   A0A2J7Q882   A0A139WMA6   T1IRG7   A0A386H798   E9FVU4   A0A1Y1L3J5   A0A0P5W8C2   A0A0P5T6L4   A0A0P4YQ14   A0A0P5HB22   A0A0N7ZPE4   A0A0P4YCA5   A0A0P5T6N9   A0A0N8AYY4   A0A0P5WQ72   A0A0P5MR04   A0A0P5KMX5   A0A0N8D6N1   A0A0P5TL18   A0A1Y1L5S3   A0A0P5DKF5   A0A0P5IS82   A0A336LRA7   A0A1W4WIT3   A0A0P6E309   A0A1L8E304   A0A1L8E3D9   A0A0P5GJ31   A0A336K654   A0A0P6E3X0   A0A1B0DD80   A0A0K8UEA2   A0A0K8VGN5   A0A034VT34   A0A0K8U989   A0A1B0CUQ1   W8AKJ4   W8AWQ6  

PDB

4M7H     E-value=1.06627e-45,     Score=463

KEGG

101746998    no KO assigned | (RefSeq) fibrinogen C domain-containing protein 1-B-like

GO

GO:0016021   GO:0008270   GO:0003676   GO:0005634  

SignalP

Position:   1 - 18,         Likelihood:  0.976123

 

 

Length:

530

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

12.48958

Exp number, first 60 AAs:

12.22284

Total prob of N-in:

0.61918

POSSIBLE N-term signal

sequence

inside

1  -  4

TMhelix

5  -  22

outside

23  -  530

 

 

Pi

4.351551

Theta

12.449717

Tajima's D

-1.912189

CLR

1.490351

CSRT

0.0150992450377481

Interpretation

Uncertain