Gene

KWMTBOMO00362  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA000710

Annotation

PREDICTED:_vesicle-associated_membrane_protein-associated_protein_B_isoform_X1_[Amyelois_transitella]

Location

Bomo_Chr1(+):10868168-10876575      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.843

CDS

ATGCCTAACCAAGTGCTAACTATCGAACCACAAAATGAATTAAAATTTAAAGTTAATTTCTCAGGGCTCTTTGAGCATGGTTGCACAACCTACATGAGACTAACGAACCCGACAAACGATACAGTGCTATTCAAGATCAAAACAACAGCACCAAAGAAATATTGCGTGCGTCCCAATTCTGGAGTTCTTGCGCCAAATTCGAAACAAGAAATCGCAATTACTCCGCAACCTGTATATTTGGACCCCAATGAAAACCACAAGCATAAATTTATGGTCCAAAGTGTAATAGCTCCAGAAGGAAAAACCAACATTGATCAAGTGTGGAAGGAGATAAGCCCCGAGCAACTCATGGACTACAAGCTAAAGTGTGTCTTTGAAACTCCGCGTGGCACTAATCTTAACGATTCTGGCGATAATGCAGCCCAGAACGATGTCACCAAGAAAAGAGTTGCAGTCGCAGAAGACGCTAAGCCTGCCGCTAAGGACGCCGTGAAAGATCTCATCCAGCATGAAGATAAAAATAAGGATGATGATCACCCTGTTGCATCAATAAACCTAAAAACGACTAATACCAAGTCTGAAAACGTTGAAAGCGATCTGCAAAAGGCGACTTTAGAAGTAATACATTTGAGAGAAGAGGAAAGCAAGTTAAGACATGAAAACCTGCAATTAAAAGAGGAGTTACTGCGCTTGCGTCAGTCGGCAGGCGGGGACGGGCGCGTCTCGCGTCCTCACTCTTACGGTCCGGAGAAGTCGACGCAAGTCACGATTATGCCGTGGGTCGTCACCGCAATATGCATGGCCATCATTGGCATCATTATTGTGCCTCGGGACGATACCATCTGGTGA

Protein

MPNQVLTIEPQNELKFKVNFSGLFEHGCTTYMRLTNPTNDTVLFKIKTTAPKKYCVRPNSGVLAPNSKQEIAITPQPVYLDPNENHKHKFMVQSVIAPEGKTNIDQVWKEISPEQLMDYKLKCVFETPRGTNLNDSGDNAAQNDVTKKRVAVAEDAKPAAKDAVKDLIQHEDKNKDDDHPVASINLKTTNTKSENVESDLQKATLEVIHLREEESKLRHENLQLKEELLRLRQSAGGDGRVSRPHSYGPEKSTQVTIMPWVVTAICMAIIGIIIVPRDDTIW

Uniprot

H9ITY0   A0A2A4JGV2   A0A2H1VV92   A0A2W1BI09   A0A2A4JGK5   A0A1E1WU19   + More
A0A1E1WCR7   A0A1E1WT04   A0A194QL94   A0A212EGN0   A0A194PGY1   A0A0L7LR87   D6WHU6   A0A0T6BET0   A0A336LKW3   A0A336LPG0   A0A2J7REM4   A0A1W4WV52   A0A1B6H175   N6U4K9   A0A1B6KH63   A0A067RGG1   J3JW86   A0A1B6DRX8   A0A1B6HWG0   A0A0K8TP53   U5EXC9   Q17GP4   Q1HQV2   A0A1L8DWA6   A0A224XX18   A0A170XJH6   F0J957   A0A158NNR5   A0A1J1HJ45   A0A023FJE8   L7M5Q2   A0A131YTL7   A0A224ZBX3   A0A2P8YM85   B7QEF1   A0A151IAX8   A0A0C9QNX3   A0A2R7WA80   A0A1E1XTC7   E2A3F5   A0A0M8ZV57   A0A1W7R9A0   A0A2A3EJM4   V9II82   A0A087ZQD5   A0A293MWL6   W5JU07   E7D141   K7J935   E2C2M3  

Pubmed

19121390    28756777    26354079    22118469    26227816    18362917    + More
19820115    23537049    24845553    22516182    26369729    17510324    17204158    21362191    21347285    25576852    26830274    28797301    29403074    29209593    20798317    20920257    23761445    20075255   

EMBL

BABH01007148    NWSH01001531    PCG70948.1    ODYU01004640    SOQ44728.1    KZ150032    + More
PZC74709.1    PCG70949.1    GDQN01011659    GDQN01000590    JAT79395.1    JAT90464.1    GDQN01006305    JAT84749.1    GDQN01000924    JAT90130.1    KQ461196    KPJ06333.1    AGBW02015069    OWR40634.1    KQ459605    KPI91964.1    JTDY01000271    KOB77977.1    KQ971321    EFA00056.1    LJIG01001111    KRT85829.1    UFQT01000041    SSX18682.1    SSX18681.1    NEVH01004959    PNF39292.1    GECZ01001336    JAS68433.1    APGK01042997    KB741011    KB632341    ENN75551.1    ERL92972.1    GEBQ01029169    JAT10808.1    KK852482    KDR22867.1    BT127504    AEE62466.1    GEDC01008861    JAS28437.1    GECU01028720    JAS78986.1    GDAI01001677    JAI15926.1    GANO01000129    JAB59742.1    CH477257    EAT45822.1    DQ440342    ABF18375.1    GFDF01003370    JAV10714.1    GFTR01003895    JAW12531.1    GEMB01004344    JAR98929.1    BK007408    DAA34113.1    ADTU01021735    ADTU01021736    CVRI01000004    CRK87436.1    GBBK01003352    JAC21130.1    GACK01005847    JAA59187.1    GEDV01006727    JAP81830.1    GFPF01013284    MAA24430.1    PYGN01000496    PSN45366.1    ABJB010804046    DS921134    EEC17233.1    KQ978169    KYM96598.1    GBYB01002332    JAG72099.1    KK854373    PTY15165.1    GFAA01000854    JAU02581.1    GL436428    EFN72019.1    KQ435867    KOX70253.1    GFAH01000667    JAV47722.1    KZ288223    PBC32013.1    JR048774    AEY60760.1    GFWV01019590    MAA44318.1    ADMH02000095    ETN67837.1    HQ005789    ADV40085.1    AAZX01003276    GL452187    EFN77801.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000007151    UP000053268    UP000037510    + More
UP000007266    UP000235965    UP000192223    UP000019118    UP000030742    UP000027135    UP000008820    UP000005205    UP000183832    UP000245037    UP000001555    UP000078542    UP000000311    UP000053105    UP000242457    UP000005203    UP000000673    UP000002358    UP000008237   

PRIDE

H9ITY0    B7QEF1   

Pfam

PF00635   Motile_Sperm

Interpro

IPR000535   MSP_dom        + More
IPR013783   Ig-like_fold       
IPR016763   VAP       
IPR008962   PapD-like_sf       
IPR030229   VAPA       

SUPFAM

SSF49354   SSF49354       

Gene 3D

2.60.40.10    

ProteinModelPortal

H9ITY0   A0A2A4JGV2   A0A2H1VV92   A0A2W1BI09   A0A2A4JGK5   A0A1E1WU19   + More
A0A1E1WCR7   A0A1E1WT04   A0A194QL94   A0A212EGN0   A0A194PGY1   A0A0L7LR87   D6WHU6   A0A0T6BET0   A0A336LKW3   A0A336LPG0   A0A2J7REM4   A0A1W4WV52   A0A1B6H175   N6U4K9   A0A1B6KH63   A0A067RGG1   J3JW86   A0A1B6DRX8   A0A1B6HWG0   A0A0K8TP53   U5EXC9   Q17GP4   Q1HQV2   A0A1L8DWA6   A0A224XX18   A0A170XJH6   F0J957   A0A158NNR5   A0A1J1HJ45   A0A023FJE8   L7M5Q2   A0A131YTL7   A0A224ZBX3   A0A2P8YM85   B7QEF1   A0A151IAX8   A0A0C9QNX3   A0A2R7WA80   A0A1E1XTC7   E2A3F5   A0A0M8ZV57   A0A1W7R9A0   A0A2A3EJM4   V9II82   A0A087ZQD5   A0A293MWL6   W5JU07   E7D141   K7J935   E2C2M3  

PDB

3IKK     E-value=4.65042e-31,     Score=334

KEGG

101744330    no KO assigned | (RefSeq) vesicle-associated membrane protein-associated protein B

GO

GO:0016021   GO:0005789   GO:0033149   GO:0070972   GO:0030968   GO:0005794   GO:0006874   GO:0043169   GO:0008270   GO:0003676   GO:0030286   GO:0006813   GO:0006810   GO:0009072   GO:0007169  

PANTHER

PTHR10809:SF40   PTHR10809  

Length:

282

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

20.80439

Exp number, first 60 AAs:

0.00099

Total prob of N-in:

0.06786

outside

1  -  252

TMhelix

253  -  275

inside

276  -  282

 

 

Pi

17.252679

Theta

15.565357

Tajima's D

0.615028

CLR

0.15654

CSRT

0.560921953902305

Interpretation

Uncertain