SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00361
Pre Gene Modal
BGIBMGA000518
Annotation
PREDICTED:_pyruvate_dehydrogenase_[acetyl-transferring]-phosphatase_1?_mitochondrial_[Amyelois_transitella]
Location in the cell
Mitochondrial   Reliability : 2.891
 

Sequence

CDS
ATGAATAGTTCGAAACTGAATTTACTTTTGAACACAGTCAATACATATTTAAGATTAAACTCGGATGTAAAACAAACAATATTAAAAAAATACTTCAAAGAAAACTTCACATTATTCTGGAACACAACATCATCTAACACTCGCTATTTTCACTCTTCCTTGAAGGCAGCGCAAGTGCAAAAAGATGGGGTCACAGTATTACCTTCGCCTCAAGAAGTCACAACAATACTCCGAAAAAACGAATTCAACAAAGAATTCACAACTGGCTCCATTAAGTGCTACGATTCAAATCAACTCGCTTCAAACGACCCCATAGAGGATACTCGTTGTGAGGCACAATGTAGGATGACTTCAGGTTTGATTATGGGGGTGTTCGATGGTCATGGTGGACCTGCTTGTGCCCAAGTTATATCAAAGAGATTGGTTGATTACATAGCAGCCGCACTTCTGCCCATAGAAACATTGCACAAGTACATTCAGCAGGATCCTCGAGAAGCTTTGGTTGACACTTTTAATAATAGAGTTGAAATTTTACAGGAATTGAAAATTTTGTATGAGCGTAGTTTTAGACAATACTTAGCAGAGTTAGCTAATTTACCACATGAGGGTTATAACGTACCAACAGCTTTGGAACAAGCCATCATAAAAATTGACCAAGATTTGTCAAAGGAAGCAGTTGAGCCATATAAACTTAATCAGGTGATAAATCCCCAGACATTATCTGTAGCACTATCTGGTGCAGTGGCCTGTGTAACACATGTGGATGGGCCTAATCTGCATATTGCGAACGTTGGCGACTGTAATGCTGTTTTGGGTATTTTGACTGAAGACAAAGAGTGGATAGCGAAAAAAATAACAAAAGAACATAATTCCGAGAATTTCGATGAGTTGAAAAGAATTTGGAATGAGCATCCTGACAATGAGAGAAAAACTGTAATACGCAGAGATAGATTACTGGGTGAACTCGCTCCTTTACGTAGTTTGGGAGATTATAGATATAAATGGCCTATAGAGATTTTAATGAAAGTGGCAGTACCTTTAATTGGCCCAAAAGCTATACCTGCAAATTACCATACACCGCCTTATTTAACGGCAAAACCAGATTTATATTACCATAGATTGAGTACAAGGGATAAATTTTTAATTCTGGCTTCGGATGGATTATGGGATATGATGACGCCATTACAGGCAGTCAAGCTGGTGGGCGAGCATATGAAGGGAAAAGTTTTCTTTAACCCTTTGAAATTGCCCAGAAAGAATATTCAGCTGGGTGATATAAATGAATTACTCCTTCACAGGAAGGAAAGCTTGAAGAGTAAGCCAAAGGATAGAAATGCAGCCACACATTTAATACGTCATGCAATAGGTGGTACAGAATACGGCGTGGACCACTCCAGATTGGCACATTTGTTGAGTTTATCCCCGGATGTGAGTCGTATGTTTCGAGATGACATAACCGTTACGGTCATGTATTTTGATTCAGAGTTCTTAAGGCAATGTCCCGCATGA
Protein
MNSSKLNLLLNTVNTYLRLNSDVKQTILKKYFKENFTLFWNTTSSNTRYFHSSLKAAQVQKDGVTVLPSPQEVTTILRKNEFNKEFTTGSIKCYDSNQLASNDPIEDTRCEAQCRMTSGLIMGVFDGHGGPACAQVISKRLVDYIAAALLPIETLHKYIQQDPREALVDTFNNRVEILQELKILYERSFRQYLAELANLPHEGYNVPTALEQAIIKIDQDLSKEAVEPYKLNQVINPQTLSVALSGAVACVTHVDGPNLHIANVGDCNAVLGILTEDKEWIAKKITKEHNSENFDELKRIWNEHPDNERKTVIRRDRLLGELAPLRSLGDYRYKWPIEILMKVAVPLIGPKAIPANYHTPPYLTAKPDLYYHRLSTRDKFLILASDGLWDMMTPLQAVKLVGEHMKGKVFFNPLKLPRKNIQLGDINELLLHRKESLKSKPKDRNAATHLIRHAIGGTEYGVDHSRLAHLLSLSPDVSRMFRDDITVTVMYFDSEFLRQCPA

Summary

Cofactor
Mg(2+)
Similarity
Belongs to the PP2C family.
EMBL
BABH01007148    KQ459605    KPI91965.1    KQ459493    KPJ00081.1    KQ461196    + More
KPJ06332.1    KZ150032    PZC74710.1    ODYU01004640    SOQ44727.1    NWSH01001531    PCG70951.1    AGBW02015069    OWR40633.1    NEVH01004959    PNF39289.1    PYGN01000496    PSN45368.1    APGK01053677    APGK01053678    APGK01053679    BT127304    KB741231    KB632387    AEE62266.1    ENN72249.1    ERL94350.1    GL888439    EGI60819.1    KK852482    KDR22865.1    KQ978023    KYM98048.1    KK107078    QOIP01000011    EZA60478.1    RLU16860.1    GL770938    EFZ09936.1    KQ978957    KYN27319.1    KQ981636    KYN38885.1    LBMM01006192    KMQ90837.1    KZ288403    PBC26224.1    KQ976472    KYM83988.1    GL449825    EFN81891.1    ADTU01025462    ADTU01025463    KQ982476    KYQ56052.1    GEZM01054558    JAV73556.1    GECU01018097    JAS89609.1    KQ435724    KOX78476.1    GECZ01011137    JAS58632.1    GL435856    EFN72556.1    GEBQ01000602    JAT39375.1    KQ971327    KYB28443.1    GFDL01012877    JAV22168.1    CH478433    EAT32992.1    JTDY01000271    KOB77985.1    KQ414758    KOC61480.1    ADMH02001732    ETN61254.1    AXCN02000807    GGFK01010038    MBW43359.1    AAAB01008964    DS232201    EDS37241.1    JXUM01030926    KQ560902    KXJ80420.1    EAA12222.4    APCN01000786    ATLV01020694    KE525305    KFB45585.1    GEDC01001425    JAS35873.1    GEDC01005909    JAS31389.1    AXCM01002012    KQ434783    KZC04715.1    AJWK01013066    GFDF01006649    JAV07435.1    GANO01003280    JAB56591.1    GBYB01005749    JAG75516.1    ABLF02021599    NNAY01001275    OXU24527.1    GGMR01005416    MBY18035.1    GFXV01007044    MBW18849.1    GDHC01016728    JAQ01901.1    GBHO01031615    GBHO01031613    JAG11989.1    JAG11991.1    DS235854    EEB18886.1    GDKW01000355    JAI56240.1    ACPB03010100    GECL01000568    JAP05556.1    KK854683    PTY17867.1    UFQS01000027    UFQT01000027    SSW97754.1    SSX18140.1    CVRI01000020    CRK90601.1    JH431683    GGMS01017728    MBY86931.1    LJIJ01002322    ODM89852.1    GEDC01023242    JAS14056.1    CH940655    EDW66207.1    KK115356    KFM64907.1    CH933812    EDW05916.1    GFPF01011049    MAA22195.1    JXJN01015182    GEFH01000467    JAP68114.1    JRES01000749    KNC28785.1    GAKP01006305    JAC52647.1    CCAG010017550    CH916370    EDV99931.1   
Pfam
PF00481   PP2C        + More
PF12738   PTCB-BRCT
PF03098   An_peroxidase
Interpro
IPR015655   PP2C        + More
IPR036457   PPM-type_dom_sf       
IPR000222   PP2C_BS       
IPR001932   PPM-type_phosphatase_dom       
IPR036420   BRCT_dom_sf       
IPR001357   BRCT_dom       
IPR010255   Haem_peroxidase_sf       
IPR037120   Haem_peroxidase_sf_animal       
IPR019791   Haem_peroxidase_animal       
SUPFAM
SSF81606   SSF81606        + More
SSF52113   SSF52113       
SSF48113   SSF48113       
Gene 3D
PDB
3N3C     E-value=4.51867e-96,     Score=898

Ontologies

Topology

Length:
502
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00358000000000001
Exp number, first 60 AAs:
0.00015
Total prob of N-in:
0.00068
outside
1  -  502
 
 

Population Genetic Test Statistics

Pi
14.349203
Theta
14.576493
Tajima's D
-0.549423
CLR
0.00024
CSRT
0.235138243087846
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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