SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00359
Pre Gene Modal
BGIBMGA000518
Annotation
PREDICTED:_pyruvate_dehydrogenase_[acetyl-transferring]-phosphatase_1?_mitochondrial_[Papilio_xuthus]
Location in the cell
Cytoplasmic   Reliability : 1.312 Mitochondrial   Reliability : 1.997
 

Sequence

CDS
ATGGGGCTCCAACGGCTATCCTGCAAAAACGCGATTGAATTATTTGAAGTGGTTTTAAGTTTGATTATGGGGGTGTTCGATGGTCATGGTGGACCTGCTTGTGCCCAAGTTATATCAAAGAGATTGGTTGATTACATAGCAGCCGCACTTCTGCCCATAGAAACATTGCACAAGTACATTCAGCAGGATCCTCGAGAAGCTTTGGTTGACACTTTTAATAATAGAGTTGAAATTTTACAGGAATTGAAAATTTTGTATGAGCGTAGTTTTAGACAATACTTAGCAGAGTTAGCTAATTTACCACATGAGGGTTATAACGTACCAACAGCTTTGGAACAAGCCATCATAAAAATTGACCAAGATTTGTCAAAGGAAGCAGTTGAGCCATATAAACTTAATCAGGTGATAAATCCCCAGACATTATCTGTAGCACTATCTGGTGCAGTGGCCTGTGTAACACATGTGGATGGGCCTAATCTGCATATTGCGAACGTTGGCGACTGTAATGCTGTTTTGGGTATTTTGACTGAAGACAAAGAGTGGATAGCGAAAAAAATAACAAAAGAACATAATTCCGAGAATTTCGATGAGTTGAAAAGAATTTGGAATGAGCATCCTGACAATGAGAGAAAAACTGTAATACGCAGAGATAGATTACTGGGTGAACTCGCTCCTTTACGTAGTTTGGGAGATTATAGATATAAATGGCCTATAGAGATTTTAATGAAAGTGGCAGTACCTTTAATTGGCCCAAAAGCTATACCTGCAAATTACCATACACCGCCTTATTTAACGGCAAAACCAGATTTATATTACCATAGATTGAGTACAAGGGATAAATTTTTAATTCTGGCTTCGGATGGATTATGGGATATGATGACGCCATTACAGGCAGTCAAGCTGGTGGGCGAGCATATGAAGGGAAAAGTTTTCTTTAACCCTTTGAAATTGCCCAGAAAGAATATTCAGCTGGGTGATATAAATGAATTACTCCTTCACAGGAAGGAAAGCTTGAAGAGTAAGCCAAAGGATAGAAATGCAGCCACACATTTAATACGTCATGCAATAGGTGGTACAGAATACGGCGTGGACCACTCCAGATTGGCACATTTGTTGAGTTTATCCCCGGATGTGAGTCGTATGTTTCGAGATGACATAACCGTTACGGTCATGTATTTTGATTCAGAGTTCTTAAGGCAATGTCCCGCATGA
Protein
MGLQRLSCKNAIELFEVVLSLIMGVFDGHGGPACAQVISKRLVDYIAAALLPIETLHKYIQQDPREALVDTFNNRVEILQELKILYERSFRQYLAELANLPHEGYNVPTALEQAIIKIDQDLSKEAVEPYKLNQVINPQTLSVALSGAVACVTHVDGPNLHIANVGDCNAVLGILTEDKEWIAKKITKEHNSENFDELKRIWNEHPDNERKTVIRRDRLLGELAPLRSLGDYRYKWPIEILMKVAVPLIGPKAIPANYHTPPYLTAKPDLYYHRLSTRDKFLILASDGLWDMMTPLQAVKLVGEHMKGKVFFNPLKLPRKNIQLGDINELLLHRKESLKSKPKDRNAATHLIRHAIGGTEYGVDHSRLAHLLSLSPDVSRMFRDDITVTVMYFDSEFLRQCPA

Summary

Cofactor
Mg(2+)
Similarity
Belongs to the PP2C family.
EMBL
BABH01007148    KQ459605    KPI91965.1    KQ459493    KPJ00081.1    KQ461196    + More
KPJ06332.1    AGBW02015069    OWR40633.1    KZ150032    PZC74710.1    ODYU01004640    SOQ44727.1    NWSH01001531    PCG70951.1    JTDY01000271    KOB77985.1    NEVH01004959    PNF39289.1    PYGN01000496    PSN45368.1    APGK01053677    APGK01053678    APGK01053679    BT127304    KB741231    KB632387    AEE62266.1    ENN72249.1    ERL94350.1    GL770938    EFZ09936.1    KQ978023    KYM98048.1    KZ288403    PBC26224.1    GEZM01054558    JAV73556.1    GL888439    EGI60819.1    KK107078    QOIP01000011    EZA60478.1    RLU16860.1    KK852482    KDR22865.1    KQ978957    KYN27319.1    KQ982476    KYQ56052.1    LBMM01006192    KMQ90837.1    KQ981636    KYN38885.1    GECU01018097    JAS89609.1    KQ435724    KOX78476.1    GL449825    EFN81891.1    KQ976472    KYM83988.1    ADTU01025462    ADTU01025463    KQ971327    KYB28443.1    GECZ01011137    JAS58632.1    GEBQ01000602    JAT39375.1    GFDL01012877    JAV22168.1    GL435856    EFN72556.1    CH478433    EAT32992.1    DS232201    EDS37241.1    AAAB01008964    AXCN02000807    ADMH02001732    ETN61254.1    KQ414758    KOC61480.1    ATLV01020694    KE525305    KFB45585.1    APCN01000786    GGFK01010038    MBW43359.1    JXUM01030926    KQ560902    KXJ80420.1    EAA12222.4    GEDC01023242    JAS14056.1    GEDC01005909    JAS31389.1    GEDC01001425    JAS35873.1    AXCM01002012    GFDF01006649    JAV07435.1    KQ434783    KZC04715.1    AJWK01013066    GGMS01017728    MBY86931.1    GANO01003280    JAB56591.1    ABLF02021599    GBYB01005749    JAG75516.1    GGMR01005416    MBY18035.1    GFXV01007044    MBW18849.1    GDHC01016728    JAQ01901.1    GBHO01031615    GBHO01031613    JAG11989.1    JAG11991.1    CVRI01000020    CRK90601.1    NNAY01001275    OXU24527.1    UFQS01000027    UFQT01000027    SSW97754.1    SSX18140.1    KK854683    PTY17867.1    DS235854    EEB18886.1    JH431683    CH940655    EDW66207.1    LJIJ01002322    ODM89852.1    LJIG01022488    KRT80310.1    CH933812    EDW05916.1    JXJN01015182    JRES01000749    KNC28785.1    GAKP01006305    JAC52647.1    CCAG010017550    CH964239    EDW82024.1    GDKW01000355    JAI56240.1    ACPB03010100    GBXI01016326    GBXI01010054    GBXI01007714    JAC97965.1    JAD04238.1    JAD06578.1    GAMC01016579    GAMC01016574    JAB89976.1    CH379064    EAL32213.1    GDHF01033787    GDHF01008627    JAI18527.1    JAI43687.1   
Pfam
PF00481   PP2C        + More
PF12738   PTCB-BRCT
PF03098   An_peroxidase
Interpro
IPR015655   PP2C        + More
IPR036457   PPM-type_dom_sf       
IPR000222   PP2C_BS       
IPR001932   PPM-type_phosphatase_dom       
IPR036420   BRCT_dom_sf       
IPR001357   BRCT_dom       
IPR010255   Haem_peroxidase_sf       
IPR037120   Haem_peroxidase_sf_animal       
IPR019791   Haem_peroxidase_animal       
SUPFAM
SSF81606   SSF81606        + More
SSF52113   SSF52113       
SSF48113   SSF48113       
Gene 3D
PDB
2PNQ     E-value=6.18161e-85,     Score=800

Ontologies

Topology

Length:
403
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.437929999999999
Exp number, first 60 AAs:
0.43022
Total prob of N-in:
0.03107
outside
1  -  403
 
 

Population Genetic Test Statistics

Pi
0
Theta
0
Tajima's D
0
CLR
0.000585
CSRT
0
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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