Gene

KWMTBOMO00353

Pre Gene Modal

BGIBMGA000708

Annotation

PREDICTED:_tetratricopeptide_repeat_protein_39B-like_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr1(+):10584453-10611447      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 2.549

CDS

ATGGCTTTGAGACAAAAAACGGTGCCAATACTGACTACGGCCGGTCCTCGCGGTTCTTGCGCCGGAAGCAGTGATCGCAGGAGTTCTGGTGATTCTCCTGAGGAAGCAGAAGAGTTTCAAGATGCTACGGAATATCATCCAACATACGACATGGATTTACATATCTCCTTCGAGGATTGCGAAGTGGCCATACATAAATTTTTCAATAATGACTTAGTTGGGGCTATGAACATAATGAGACCATGGGCACGTACTTCTTTGTACCATAGTCTGGGTGCGTCCATTTTTGAGTTCATACCGGCGATGTTGACTTTTGACCACGAACAAATCGGTCGGTCAATTGTTGCACTGAAGCAGTGCATTACCATTTGTAACAAAAATCGCAAGAGTTTCTCCTTAGTGGAGAGTCTCGGTACCATTATAAAAAAGCCCAATTACGCGTTGTACACGGATTTGGAGGCTCATGCGGAACTGTGCTACGCTGAAGCTCTACTCCTCCAAGCCGCCATGACAATCATGGAAGGCGAAGATTTAACTGGCCTCATTAAAGGCACTATTAAAGTGAAGAGCTGTTATAACACCTACAAGGAATGCTCTAAGATCTTAGAAAAGAAACAATGGGACACTGATGAGTCGAAAAGGCACTTCCAAAGCGGAGTTCGCCTTGGTATGGCTACGTTCAATGTCATGATTTCGCTGCTGCCTCCAAAAATCATAAGTCTGCTGGAATTTGTGGGCTTCTCAGGAAACAAGGCGCTGGGTCTGTCTGAACTTCAAGCAGCGTCTCGATCGCCGGGCATGAGGTCTGTATTGTGCGATCTGACATTGCTCGGGTACCATCTCGTCATATGCCATTTCGTCGGAGCCTCTGGAGATCTGAAAGTCTGCGAAGAAATACTCGAGAAAATACTCAAGGTAATATACCCCGAGAGCGTTTGGTTCTTAGTGTTCAAAGGGAGACTGGAATTCCTTCGCGGCCTCTTTGAACCGGCGATAAGCACCTACAACTGTGCTTTGAATAGCCAGCATAATTTCAAGCAGTTCCGCCATCTATGCTTCTGGGAGATCATGTGGGTCAATAGCTTGAAAATGGAGTGGCGTGAAGCAGCACAATACGCTACTAAACTAATGGATGAGAGCTCATGGTCCCGTACCATTTACTCGTACACCAAGGCGGCGATGCTGCTGCAACTCGGAAGCGATATGACCCCAAACGAGAAACACCAGTGCAATGAATTGTTAAGGAATTGTTCCTTTTACAAACAACGCATAGCCGGAAAATCATTGCCTATGGAAAAATTCATGATTAAGCGCGCTGCTCGATACTACACACAGGGAGGGCGCCTAGTGTTGCCGGCTATTGAACTACTCTGCCTATGGAACATGTTCGGCATACTCACCTACAATTCAAGAGGAGCACAATACGTACTCAAAGTGATCGAAGTGACCCGCGAGCGTGTCGAGGATCATCGGTTTGATTGGATGGGCATTTATATTGCTGACAACCGCGCCTTGCTGCGCTATATGCACGGATGCTGTCTGGCCGCCATGGGTCTGCCTCGTCTGGCTCTCAACAGTTTCGACGCTGTATTCCAGCTGAAGAGTGAAATTAAAGAAGATACATTTCTGTTCCCGTACACTGTGGTCGAAGTAGCAATGTGCCACTACCAACTAGGGGATAAAGATAAAGCTGTTCAGCTCTTAAACGAGGCTAGAAGGAAGTACTCAGGATACTCTTTGGAATCGCGGCTACATTTCCGCATTCACTCCAAGATGGATCTGGTGAAGGCCGATATCGCAGCCGAGGAAGCTACGAAGACTGCATCAAAAGCTACAACCGTTACAACACATGTGCAACACACAACTGCTGTTTAA

Protein

MALRQKTVPILTTAGPRGSCAGSSDRRSSGDSPEEAEEFQDATEYHPTYDMDLHISFEDCEVAIHKFFNNDLVGAMNIMRPWARTSLYHSLGASIFEFIPAMLTFDHEQIGRSIVALKQCITICNKNRKSFSLVESLGTIIKKPNYALYTDLEAHAELCYAEALLLQAAMTIMEGEDLTGLIKGTIKVKSCYNTYKECSKILEKKQWDTDESKRHFQSGVRLGMATFNVMISLLPPKIISLLEFVGFSGNKALGLSELQAASRSPGMRSVLCDLTLLGYHLVICHFVGASGDLKVCEEILEKILKVIYPESVWFLVFKGRLEFLRGLFEPAISTYNCALNSQHNFKQFRHLCFWEIMWVNSLKMEWREAAQYATKLMDESSWSRTIYSYTKAAMLLQLGSDMTPNEKHQCNELLRNCSFYKQRIAGKSLPMEKFMIKRAARYYTQGGRLVLPAIELLCLWNMFGILTYNSRGAQYVLKVIEVTRERVEDHRFDWMGIYIADNRALLRYMHGCCLAAMGLPRLALNSFDAVFQLKSEIKEDTFLFPYTVVEVAMCHYQLGDKDKAVQLLNEARRKYSGYSLESRLHFRIHSKMDLVKADIAAEEATKTASKATTVTTHVQHTTAV

Uniprot

H9ITX8   A0A2W1BPP3   A0A194QUY7   A0A212EY10   A0A2J7RSU0   A0A0K8TME9   + More
A0A194PS14   A0A1L8DAQ8   A0A1L8DAZ8   A0A067QZZ8   U5EZG2   W5J974   A0A182QEU7   A0A2M4ABA5   D6W7S5   A0A1Y1N4E8   A0A1Y9HDU1   A0A182LN85   Q7PRG5   A0A1S4F7A0   A0A182HX77   A0A182JBJ6   A0A1Q3FYW8   A0A182GQZ7   Q17D44   A0A182MA20   A0A1B0CEL8   A0A151IY89   A0A158NZQ5   E2AAW2   A0A0T6B0M7   F4WRJ8   N6T913   A0A1B6HRS6   A0A151I3V7   A0A182TRZ8   A0A182NDJ3   A0A195D1X3   A0A088AUU0   A0A3L8D6T1   A0A195F2M7   A0A310SXB4   A0A2A3E610   J9JQF6   A0A034W997   A0A034WBW5   A0A154PL81   A0A034WAE3   A0A0C9R679   A0A232EM25   A0A0M8ZZ07   A0A224XMH1   E0VXA8   A0A0V0G9P2   A0A0L7QL73   A0A0P4WH78   A0A1B6FU88   A0A182PEV1   R4G816   E2C0B2   A0A182XB04   A0A1B0A8B7   A0A0P5DP68   A0A182K181   D0Z7D5   A0A164SSW5   A0A0N8BD94   A0A2H8TGE5   A0A0P4XJG3   A0A026W4M3   B4MF34   A0A0P5DK48   A0A0P5I4Z6   A0A182W3R0   A0A0P5WAZ8   A0A0P6A7N2   A0A0A9WQC0   A0A0P5Y5W0   A0A0P5X0G0   A0A0P5DWL5   A0A0P6ADQ5   A0A0P4ZQH2   A0A182FM13   E9FTH7   A0A0P5TCT4   A0A0P5TDU5   A0A2P8ZHU0   A0A1D2NKA2   A0A0Q9XRX8   A0A0Q9XPN6   A0A1A9WYA6   A0A0P4VML5   A0A0P4XX09   A0A0P5VI09   A0A1Y1N317   A0A1B6L608   A0A1B0C6E2   A0A1B0G3F7   A0A1A9YNJ0  

Pubmed

19121390    28756777    26354079    22118469    26369729    24845553    + More
20920257    23761445    18362917    19820115    28004739    20966253    12364791    14747013    17210077    17510324    26483478    21347285    20798317    21719571    23537049    30249741    25348373    28648823    20566863    17994087    24508170    18057021    25401762    26823975    21292972    29403074    27289101    27129103   

EMBL

BABH01007132    BABH01007133    KZ150032    PZC74700.1    KQ461108    KPJ09282.1    + More
AGBW02011631    OWR46383.1    NEVH01000250    PNF43899.1    GDAI01002061    JAI15542.1    KQ459594    KPI96097.1    GFDF01010546    JAV03538.1    GFDF01010547    JAV03537.1    KK852808    KDR16027.1    GANO01000854    JAB59017.1    ADMH02002024    ETN59938.1    AXCN02001759    GGFK01004752    MBW38073.1    KQ971307    EFA11237.1    GEZM01013851    JAV92288.1    AAAB01008849    EAA07239.5    APCN01005148    GFDL01002298    JAV32747.1    JXUM01083727    KQ563393    KXJ73907.1    CH477300    EAT44277.1    AXCM01001040    AXCM01001041    AJWK01008993    KQ980791    KYN13144.1    ADTU01004894    ADTU01004895    GL438191    EFN69425.1    LJIG01016297    KRT81024.1    GL888291    EGI63143.1    APGK01047183    KB741077    KB631792    ENN74203.1    ERL86168.1    GECU01030346    JAS77360.1    KQ976474    KYM83954.1    KQ976948    KYN06915.1    QOIP01000012    RLU15966.1    KQ981856    KYN34713.1    KQ759866    OAD62484.1    KZ288356    PBC27177.1    ABLF02030701    ABLF02030711    ABLF02030715    GAKP01007683    GAKP01007682    JAC51269.1    GAKP01007684    JAC51268.1    KQ434954    KZC12619.1    GAKP01007685    JAC51267.1    GBYB01003500    GBYB01003501    GBYB01005813    JAG73267.1    JAG73268.1    JAG75580.1    NNAY01003467    OXU19362.1    KQ435794    KOX73995.1    GFTR01007215    JAW09211.1    DS235830    EEB18014.1    GECL01001491    JAP04633.1    KQ414934    KOC59340.1    GDRN01089349    JAI60685.1    GECZ01015983    JAS53786.1    GAHY01001757    JAA75753.1    GL451753    EFN78664.1    GDIP01156886    JAJ66516.1    CM000831    ACY70512.1    LRGB01001937    KZS09908.1    GDIQ01189107    JAK62618.1    GFXV01000553    MBW12358.1    GDIP01241023    JAI82378.1    KK107488    EZA49994.1    CH940665    EDW71135.2    KRF85394.1    GDIP01155083    JAJ68319.1    GDIQ01219302    JAK32423.1    GDIP01089802    JAM13913.1    GDIP01038206    JAM65509.1    GBHO01034911    GDHC01009136    JAG08693.1    JAQ09493.1    GDIP01064101    JAM39614.1    GDIP01091145    JAM12570.1    GDIP01151540    JAJ71862.1    GDIP01031196    JAM72519.1    GDIP01209333    JAJ14069.1    GL732524    EFX89362.1    GDIP01127930    JAL75784.1    GDIP01127929    JAL75785.1    PYGN01000053    PSN56062.1    LJIJ01000019    ODN05649.1    CH933813    KRG07222.1    KRG07223.1    KRG07220.1    GDKW01002900    JAI53695.1    GDIP01235631    JAI87770.1    GDIP01099681    JAM04034.1    GEZM01013850    JAV92291.1    GEBQ01020877    JAT19100.1    JXJN01026575    CCAG010019174    CCAG010019175   

Proteomes

UP000005204    UP000053240    UP000007151    UP000235965    UP000053268    UP000027135    + More
UP000000673    UP000075886    UP000007266    UP000075900    UP000075882    UP000007062    UP000075840    UP000075880    UP000069940    UP000249989    UP000008820    UP000075883    UP000092461    UP000078492    UP000005205    UP000000311    UP000007755    UP000019118    UP000030742    UP000078540    UP000075902    UP000075884    UP000078542    UP000005203    UP000279307    UP000078541    UP000242457    UP000007819    UP000076502    UP000215335    UP000053105    UP000009046    UP000053825    UP000075885    UP000008237    UP000076407    UP000092445    UP000075881    UP000008792    UP000076858    UP000053097    UP000075920    UP000069272    UP000000305    UP000245037    UP000094527    UP000009192    UP000091820    UP000092460    UP000092444    UP000092443   

PRIDE

H9ITX8   

Pfam

PF13174   TPR_6        + More
PF10300   DUF3808
PF00005   ABC_tran

Interpro

IPR019734   TPR_repeat        + More
IPR019412   Iml2/TPR_39       
IPR011990   TPR-like_helical_dom_sf       
IPR026082   ABCA       
IPR003593   AAA+_ATPase       
IPR027417   P-loop_NTPase       
IPR017871   ABC_transporter_CS       
IPR003439   ABC_transporter-like       

SUPFAM

SSF48452   SSF48452        + More
SSF52540   SSF52540       

Gene 3D

1.25.40.10    

ProteinModelPortal

H9ITX8   A0A2W1BPP3   A0A194QUY7   A0A212EY10   A0A2J7RSU0   A0A0K8TME9   + More
A0A194PS14   A0A1L8DAQ8   A0A1L8DAZ8   A0A067QZZ8   U5EZG2   W5J974   A0A182QEU7   A0A2M4ABA5   D6W7S5   A0A1Y1N4E8   A0A1Y9HDU1   A0A182LN85   Q7PRG5   A0A1S4F7A0   A0A182HX77   A0A182JBJ6   A0A1Q3FYW8   A0A182GQZ7   Q17D44   A0A182MA20   A0A1B0CEL8   A0A151IY89   A0A158NZQ5   E2AAW2   A0A0T6B0M7   F4WRJ8   N6T913   A0A1B6HRS6   A0A151I3V7   A0A182TRZ8   A0A182NDJ3   A0A195D1X3   A0A088AUU0   A0A3L8D6T1   A0A195F2M7   A0A310SXB4   A0A2A3E610   J9JQF6   A0A034W997   A0A034WBW5   A0A154PL81   A0A034WAE3   A0A0C9R679   A0A232EM25   A0A0M8ZZ07   A0A224XMH1   E0VXA8   A0A0V0G9P2   A0A0L7QL73   A0A0P4WH78   A0A1B6FU88   A0A182PEV1   R4G816   E2C0B2   A0A182XB04   A0A1B0A8B7   A0A0P5DP68   A0A182K181   D0Z7D5   A0A164SSW5   A0A0N8BD94   A0A2H8TGE5   A0A0P4XJG3   A0A026W4M3   B4MF34   A0A0P5DK48   A0A0P5I4Z6   A0A182W3R0   A0A0P5WAZ8   A0A0P6A7N2   A0A0A9WQC0   A0A0P5Y5W0   A0A0P5X0G0   A0A0P5DWL5   A0A0P6ADQ5   A0A0P4ZQH2   A0A182FM13   E9FTH7   A0A0P5TCT4   A0A0P5TDU5   A0A2P8ZHU0   A0A1D2NKA2   A0A0Q9XRX8   A0A0Q9XPN6   A0A1A9WYA6   A0A0P4VML5   A0A0P4XX09   A0A0P5VI09   A0A1Y1N317   A0A1B6L608   A0A1B0C6E2   A0A1B0G3F7   A0A1A9YNJ0  

KEGG

101745437    no KO assigned | (RefSeq) tetratricopeptide repeat protein 39B-like

GO

GO:0005524   GO:0042626   GO:0016021   GO:0005515   GO:0005634   GO:0008270   GO:0003676   GO:0030286   GO:0006813   GO:0006810   GO:0009072   GO:0007169  

PANTHER

PTHR31859   PTHR19229  

Length:

624

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

4.37807

Exp number, first 60 AAs:

0

Total prob of N-in:

0.11807

outside

1  -  624

 

 

Pi

12.441005

Theta

21.87508

Tajima's D

-2.392523

CLR

0.158669

CSRT

0.00139993000349982

Interpretation

Uncertain