Silkworm Genome Informatics Database

Gene

KWMTBOMO00351

Annotation

THAP_domain-containing_protein_2_[Papilio_machaon]

Location

Bomo_Chr1(+):10566373-10567168 View in EpiBrowser

Transcription factor

THAP

Location in the cell

Mitochondrial Reliability : 1.898 Nuclear Reliability : 1.703

CDS

ATGCCAGTGTGTAGTGTTATTGGGTGCGGCATAAGAAAAACACCAAATCGGCCATCATTAACCATACACAGGATCCCAAGAAATGAGCGTAAAAAGAAAAAGTGGCTGGAAGCTATTGGAATGGAAAATGTAAAGCCAAATGTAAAAGAAATTTATATTTGCTCGAACTTATATTTGCTTGCTTTGAAAAACAATATTCGGAAGAGACTAGAAAATTTGCCCGTACGCTCCACTTTTTTTCGCCGAAGGCCTACAATTTTGTGCGCCGACATACAATACATGCTGGCCTCACCCAAGGACTTTAACTAG

Protein

MPVCSVIGCGIRKTPNRPSLTIHRIPRNERKKKKWLEAIGMENVKPNVKEIYICSNLYLLALKNNIRKRLENLPVRSTFFRRRPTILCADIQYMLASPKDFN

Uniprot

A0A2W1BCB5 A0A2R5LDX2 A0A1B6I1F1 A0A1Z5L812 A0A1A8PF11

Pubmed

28756777 28528879

EMBL

KZ150504 PZC70656.1 GGLE01003597 MBY07723.1 GECU01026992 JAS80714.1 + More
GFJQ02003642 JAW03328.1 HAEI01002346 SBR79980.1

Pfam

PF05485 THAP + More
PF00096 zf-C2H2

Interpro

IPR006612   THAP_Znf        + More
IPR036236   Znf_C2H2_sf
IPR038441   THAP_Znf_sf
IPR012934   Znf_AD
IPR013087   Znf_C2H2_type

SUPFAM

SSF57667 SSF57667

Gene 3D

3.30.40.180

ProteinModelPortal

A0A2W1BCB5 A0A2R5LDX2 A0A1B6I1F1 A0A1Z5L812 A0A1A8PF11

KEGG

101737340 K23203 THAP domain-containing protein 1/3 | (RefSeq) THAP domain-containing protein 1-like

GO

GO:0003677 GO:0008270 GO:0005634 GO:0003676 GO:0015269 GO:0016020 GO:0016491 GO:0030286 GO:0006813 GO:0006810 GO:0009072 GO:0007169 GO:0016021

Length:

102

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00761000000000001

Exp number, first 60 AAs:

0.0039

Total prob of N-in:

0.12154

outside

1 - 102

Pi

0.705686

Theta

11.858239

Tajima's D

-2.772193

CLR

3.911161

CSRT

0

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics