Gene

KWMTBOMO00345  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA000703

Annotation

PREDICTED:_procollagen-lysine?2-oxoglutarate_5-dioxygenase_1_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr1(+):10415199-10417892      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.91

CDS

ATGGGACTTTTTATACAATTAATATTATGTGTATTTGTTATTCTTTTCAACAGTCATACACAAGCTACAGATGAAGTGGTTGTGTTGACTGTTGCCACTGACGATAACCATGGCCTAGAGAGGTTTTTACGTTCTGCCAAAGTGTACAATATTGATGTCGAGGTATTGGGCAAGGGTGAAGAGTGGTCAGGTGGTGACATGAACTTCCCCGGTGGTGGACAAAAAGTAATTCTTCTGAAAAACAGGCTTGAGAAGCTGATGAAAGCTGACAACAAAGAGAAAATAATACTTTTCACTGACAGTTATGACGTCATGTTCTTGGGGAATTTAGATGAGATTGTAAAGAAATTCAAGTCTTTTCCTGATACACGTGTGCTTTTTTCTGCTGAACAATTTTGTTGGCCTGATGCAAAACTTGCAACTCAATATCCAAACATTGAAGTTGTAAGTCCATATTTGAACTCTGGTGGATTTATAGGTTACTTGCCAGAAATATATGAGATTATCAATAGCAACCCAATCAAGGATAAGGATGATGATCAATTGTACTACACAAAGATATATCTTGATAAGGATTTGAGGGAATCACTCAAAATTACACTTGATCATAAATCAGAGATTTTCCAAAACTTAAATGGAGCTCTTTCTGATGTACAACTAAGGGCTAATACTACAGAAGAATGGCCATATATTGAAAATGTGGTAACAAAATTAAGGCCTTTAATTGTCCATGGTAATGGACCAGTTAAAAATACCCTGAACCATTATGGAAACTATTTGGCTAAGTCTTGGTCAGTGAATGAGGGCTGTGTGCTGTGTAAAGAGAAAAAGATTCAGTTGAAGGAGGACAACTTACCGAGTGTTATGATGGCAGTATTCATAGAGCAAGCAACACCATTTCTAGAAGATTTTTTAGATCAAGTCATTGATACTGATTATCCTAAGAATAAAATTCATTTGTTTATACACAATAATGTAGAATATCACGAGAATGAGGTGGAGAAATTTTTCGGAGCCTACTCTAAAGAATATGCCTCAGCAAAACGTATAAATTCTGGAGACTTCATTTCAGAAGCAGAAGCAAGAAACCTTGCAAAGGAAAGATGCATCAACAGTGCATGCGACTATCTGTTCTCTGTGGACAGCCTGTCTCGTCTTGAAAGTAACGTTTTACGTTATTTGCTCTCTTCTGGCTATGACGTCATCGCGCCGATGCTAACGCGTCCTGGCAAAGCCTGGTCCAACTTCTGGGGAGCTCTCAACTCTGCTGGATTTTATGCGAGATCCGCAGATTATATGGACATAGTATATGGAGTTATAAAGTGA

Protein

MGLFIQLILCVFVILFNSHTQATDEVVVLTVATDDNHGLERFLRSAKVYNIDVEVLGKGEEWSGGDMNFPGGGQKVILLKNRLEKLMKADNKEKIILFTDSYDVMFLGNLDEIVKKFKSFPDTRVLFSAEQFCWPDAKLATQYPNIEVVSPYLNSGGFIGYLPEIYEIINSNPIKDKDDDQLYYTKIYLDKDLRESLKITLDHKSEIFQNLNGALSDVQLRANTTEEWPYIENVVTKLRPLIVHGNGPVKNTLNHYGNYLAKSWSVNEGCVLCKEKKIQLKEDNLPSVMMAVFIEQATPFLEDFLDQVIDTDYPKNKIHLFIHNNVEYHENEVEKFFGAYSKEYASAKRINSGDFISEAEARNLAKERCINSACDYLFSVDSLSRLESNVLRYLLSSGYDVIAPMLTRPGKAWSNFWGALNSAGFYARSADYMDIVYGVIK

Uniprot

H9ITX3   A0A2H1W0V4   A0A0L7LBB3   A0A194PRJ2   A0A212F445   A0A194QWH5   + More
S4NHY6   A0A0P5I923   A0A162S991   A0A0P5B4J4   A0A2J7RR31   A0A2J7RR37   A0A232FAU6   A0A0P5NYS1   A0A0N8AUW0   A0A0P5P021   A0A0P5M306   K7IVX4   A0A0P5LS99   A0A0P5KRU6   A0A0N8E1Q9   A0A067REG2   A0A0P5M0Q3   A0A0P5QYK7   A0A0P5JSJ0   A0A0N8BLT6   A0A0P5QS01   A0A0P5NME7   A0A0P5P496   A0A0P5NHS3   A0A0P5NG81   A0A0P5JJI9   A0A0P5KK71   A0A0N8B8B3   A0A0P5QR93   A0A0P5KMC5   A0A0P5JXF0   A0A0P4Z265   A0A0P5R1V7   A0A0P5QR26   A0A0P5MLU1   A0A0P4ZUT5   A0A0P5LBJ9   A0A0P6E1S3   A0A0P5QRZ8   A0A0P5E0C4   A0A0P5QNQ7   A0A0N7ZR58   A0A0N8CAQ3   A0A0P5P089   A0A0P5HN38   A0A0P5CV80   A0A0P5UPS5   A0A0P5E062   A0A0P5E4E5   A0A0P5VND4   A0A0P5Q949   A0A0N8CDX6   A0A0P5SG72   A0A0P6GUT5   A0A0P5DI81   A0A0P5VRI1   A0A0N8AL73   A0A0P5DAT9   A0A0P4XQ27   A0A0P4VSX2   T1I002   A0A0P5M7Y9   A0A0P5E911   A0A0P6GL54   A0A0J7L7A2   A0A0P5X6Z2   A0A0P6FYA8   A0A0N8CHB4   A0A0P5T8J6   A0A0P5XA97   A0A0P5X6Y9   A0A0P5I8R5   A0A0P4Z8G5   A0A224XJ30   T1IVE2   E9HBN9   A0A087UNY4   A0A195D4L7   E2A8F6   A0A0M8ZQJ2   A0A195E225   A0A0P5VHB6   A0A195FW11   A0A151XFE7   F4WD86   D6WLT6   A0A3L8DFR0   A0A026WU85   A0A087ZSW8   A0A158NHE9   A0A226EI40   A0A195AZH6   E9J2R9  

Pubmed

19121390    26227816    26354079    22118469    23622113    28648823    + More
20075255    24845553    27129103    21292972    20798317    21719571    18362917    19820115    30249741    24508170    21347285    21282665   

EMBL

BABH01007118    ODYU01005652    SOQ46721.1    JTDY01001870    KOB72674.1    KQ459594    + More
KPI96066.1    AGBW02010446    OWR48492.1    KQ461108    KPJ09315.1    GAIX01014234    JAA78326.1    GDIQ01216895    JAK34830.1    LRGB01000084    KZS21107.1    GDIP01194323    JAJ29079.1    NEVH01000611    PNF43292.1    PNF43291.1    NNAY01000548    OXU27742.1    GDIQ01140329    JAL11397.1    GDIQ01240579    JAK11146.1    GDIQ01142174    JAL09552.1    GDIQ01185744    JAK65981.1    GDIQ01166666    JAK85059.1    GDIQ01185743    JAK65982.1    GDIQ01070396    JAN24341.1    KK852521    KDR22122.1    GDIQ01165172    JAK86553.1    GDIQ01128172    JAL23554.1    GDIQ01199344    JAK52381.1    GDIQ01165171    JAK86554.1    GDIQ01110373    JAL41353.1    GDIQ01140328    JAL11398.1    GDIQ01140327    JAL11399.1    GDIQ01142175    JAL09551.1    GDIQ01165173    JAK86552.1    GDIQ01197993    JAK53732.1    GDIQ01190052    JAK61673.1    GDIQ01202955    JAK48770.1    GDIQ01113478    JAL38248.1    GDIQ01187297    JAK64428.1    GDIQ01197994    JAK53731.1    GDIP01219467    JAJ03935.1    GDIQ01113477    JAL38249.1    GDIQ01117186    JAL34540.1    GDIQ01157518    JAK94207.1    GDIP01212283    JAJ11119.1    GDIQ01176600    JAK75125.1    GDIQ01070395    JAN24342.1    GDIQ01110374    JAL41352.1    GDIP01149790    JAJ73612.1    GDIQ01132039    JAL19687.1    GDIP01220673    JAJ02729.1    GDIQ01098235    JAL53491.1    GDIQ01135464    JAL16262.1    GDIQ01231033    JAK20692.1    GDIP01165085    JAJ58317.1    GDIP01113646    JAL90068.1    GDIP01148478    JAJ74924.1    GDIP01147190    JAJ76212.1    GDIP01097699    JAM06016.1    GDIQ01126728    JAL24998.1    GDIP01141239    JAL62475.1    GDIP01140131    JAL63583.1    GDIQ01041215    JAN53522.1    GDIP01172531    JAJ50871.1    GDIP01096442    JAM07273.1    GDIQ01264875    JAJ86849.1    GDIP01158783    JAJ64619.1    GDIP01239366    JAI84035.1    GDKW01000998    JAI55597.1    ACPB03000862    GDIQ01159415    JAK92310.1    GDIP01163223    JAJ60179.1    GDIQ01187298    GDIQ01032161    JAN62576.1    LBMM01000375    KMQ98947.1    GDIP01076483    JAM27232.1    GDIQ01041214    JAN53523.1    GDIP01131735    JAL71979.1    GDIP01131734    JAL71980.1    GDIP01075041    JAM28674.1    GDIP01076484    JAM27231.1    GDIQ01217994    JAK33731.1    GDIP01217968    JAJ05434.1    GFTR01007834    JAW08592.1    JH431581    GL732616    EFX70878.1    KK120807    KFM79073.1    KQ976870    KYN07786.1    GL437593    EFN70276.1    KQ435903    KOX69080.1    KQ979763    KYN19200.1    GDIP01114989    JAL88725.1    KQ981208    KYN44845.1    KQ982194    KYQ59099.1    GL888086    EGI67813.1    KQ971343    EFA03403.2    QOIP01000008    RLU19234.1    KK107109    EZA59211.1    ADTU01015730    LNIX01000003    OXA56714.1    KQ976694    KYM77606.1    GL767998    EFZ12885.1   

Proteomes

UP000005204    UP000037510    UP000053268    UP000007151    UP000053240    UP000076858    + More
UP000235965    UP000215335    UP000002358    UP000027135    UP000015103    UP000036403    UP000000305    UP000054359    UP000078542    UP000000311    UP000053105    UP000078492    UP000078541    UP000075809    UP000007755    UP000007266    UP000279307    UP000053097    UP000005203    UP000005205    UP000198287    UP000078540   

PRIDE

H9ITX3   

Pfam

PF03171   2OG-FeII_Oxy        + More
PF05189   RTC_insert
PF01137   RTC

Interpro

IPR006620   Pro_4_hyd_alph        + More
IPR005123   Oxoglu/Fe-dep_dioxygenase       
IPR029044   Nucleotide-diphossugar_trans       
IPR017770   RNA3'_term_phos_cyc_type_1       
IPR023797   RNA3'_phos_cyclase_dom       
IPR013792   RNA3'P_cycl/enolpyr_Trfase_a/b       
IPR013791   RNA3'-term_phos_cycl_insert       
IPR020719   RNA3'_term_phos_cycl-like_CS       
IPR036553   RPTC_insert       
IPR037136   RNA3'_phos_cyclase_dom_sf       

SUPFAM

SSF53448   SSF53448        + More
SSF55205   SSF55205       

Gene 3D

3.90.550.10     3.30.360.20     3.65.10.20    

ProteinModelPortal

H9ITX3   A0A2H1W0V4   A0A0L7LBB3   A0A194PRJ2   A0A212F445   A0A194QWH5   + More
S4NHY6   A0A0P5I923   A0A162S991   A0A0P5B4J4   A0A2J7RR31   A0A2J7RR37   A0A232FAU6   A0A0P5NYS1   A0A0N8AUW0   A0A0P5P021   A0A0P5M306   K7IVX4   A0A0P5LS99   A0A0P5KRU6   A0A0N8E1Q9   A0A067REG2   A0A0P5M0Q3   A0A0P5QYK7   A0A0P5JSJ0   A0A0N8BLT6   A0A0P5QS01   A0A0P5NME7   A0A0P5P496   A0A0P5NHS3   A0A0P5NG81   A0A0P5JJI9   A0A0P5KK71   A0A0N8B8B3   A0A0P5QR93   A0A0P5KMC5   A0A0P5JXF0   A0A0P4Z265   A0A0P5R1V7   A0A0P5QR26   A0A0P5MLU1   A0A0P4ZUT5   A0A0P5LBJ9   A0A0P6E1S3   A0A0P5QRZ8   A0A0P5E0C4   A0A0P5QNQ7   A0A0N7ZR58   A0A0N8CAQ3   A0A0P5P089   A0A0P5HN38   A0A0P5CV80   A0A0P5UPS5   A0A0P5E062   A0A0P5E4E5   A0A0P5VND4   A0A0P5Q949   A0A0N8CDX6   A0A0P5SG72   A0A0P6GUT5   A0A0P5DI81   A0A0P5VRI1   A0A0N8AL73   A0A0P5DAT9   A0A0P4XQ27   A0A0P4VSX2   T1I002   A0A0P5M7Y9   A0A0P5E911   A0A0P6GL54   A0A0J7L7A2   A0A0P5X6Z2   A0A0P6FYA8   A0A0N8CHB4   A0A0P5T8J6   A0A0P5XA97   A0A0P5X6Y9   A0A0P5I8R5   A0A0P4Z8G5   A0A224XJ30   T1IVE2   E9HBN9   A0A087UNY4   A0A195D4L7   E2A8F6   A0A0M8ZQJ2   A0A195E225   A0A0P5VHB6   A0A195FW11   A0A151XFE7   F4WD86   D6WLT6   A0A3L8DFR0   A0A026WU85   A0A087ZSW8   A0A158NHE9   A0A226EI40   A0A195AZH6   E9J2R9  

PDB

6FXY     E-value=9.88646e-96,     Score=894

KEGG

101743038    K13647 procollagen-lysine,2-oxoglutarate 5-dioxygenase, invertebrate [EC:1.14.11.4] | (RefSeq) proco

GO

GO:0005506   GO:0016705   GO:0031418   GO:0051213   GO:0016021   GO:0017185   GO:0008475   GO:0030199   GO:0046947   GO:0032963   GO:0006396   GO:0003963  

SignalP

Position:   1 - 22,         Likelihood:  0.995783

 

 

Length:

441

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.35052

Exp number, first 60 AAs:

0.32404

Total prob of N-in:

0.01713

outside

1  -  441

 

 

Pi

6.540101

Theta

5.556669

Tajima's D

0.663774

CLR

0

CSRT

0.593820308984551

Interpretation

Uncertain