Silkworm Genome Informatics Database

Gene

KWMTBOMO00339 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA000526

Annotation

Y-box_protein_[Bombyx_mori]

Location

Bomo_Chr1(-):10332189-10334568 View in EpiBrowser

Transcription factor

CSD

Location in the cell

Nuclear Reliability : 2.954

CDS

ATGGCTGATACCGAAAAGGCGCCGCAGCCGCAGCCCCAACAACAACTAGAACAACAACCTCAAGCTCAACAAGCTAAAACAGTTAAACAAAAGCAGGTCATCGCTGAGAAAGTATCGGGCACTGTGAAATGGTTCAACGTCAAGAGTGGATATGGTTTCATCAACAGGAATGACACCAAGGAAGATGTGTTTGTGCATCAGACTGCCATCGCCCGTAACAACCCACGTAAGGCTGTGCGCTCGGTCGGCGACGGAGAGGCGGTGGAGTTTGCCGTGGTTGCCGGGGAGAAAGGCTTTGAAGCAGCTGGTGTTACTGGTCCCGGTGGTGAGCCAGTAAAAGGCTCACCTTATGCTGCAGACAAGCGCCGTGGCTACCACCGCCAATATTTCCCTCGTCAAGGTGGCGGACGAGGCGGTGAAGGAGCTCCACGCAGAGGAGGATTAGGACGTCGTGGACCCCCGCCCAACCAAGGGGGTGCACAAGGAGATGAGGGTCAAGAAGGAGGCATTGTACCATCTCAGCGCAGTTTTTTCCGTCGCAATTTTCGCGGTGGACGCCGTGGGGGAGGTCCTGGCCCAATGAATAGAGGAGGGTTCCGCCGAGTGCGTCCGCGCAATTTCCAGCCGGGGCAGGGAGGACAAAATCAGGCTCAGCGCCAAAATGGCCAGGATGGAGATGCCTCAGCTACAACATCAAACCAACAGCAGGGGGCCAAGCCTAAAAGTAACAAACCTGTTGGTACTACTATTGAGACAACTACCAATGAGAGCCAGGCCTAG

Protein

MADTEKAPQPQPQQQLEQQPQAQQAKTVKQKQVIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFPRQGGGRGGEGAPRRGGLGRRGPPPNQGGAQGDEGQEGGIVPSQRSFFRRNFRGGRRGGGPGPMNRGGFRRVRPRNFQPGQGGQNQAQRQNGQDGDASATTSNQQQGAKPKSNKPVGTTIETTTNESQA

Uniprot

H9ITE6 Q6F6B1

Pubmed

19121390 15213243

EMBL

BABH01007111 AB098537 BAD26606.1

Proteomes

UP000005204

PRIDE

H9ITE6 Q6F6B1

Pfam

PF00313 CSD

Interpro

IPR012340   NA-bd_OB-fold        + More
IPR019844   CSD_1
IPR002059   CSP_DNA-bd
IPR011129   CSD

SUPFAM

SSF50249 SSF50249

CDD

cd04458 CSP_CDS

ProteinModelPortal

H9ITE6 Q6F6B1

PDB

1H95 E-value=1.77997e-26, Score=294

KEGG

692441 K09276 Y-box-binding protein 1 | (RefSeq) Ybp, BYB; Y-box protein

GO

GO:0003676 GO:0003677 GO:0006355 GO:0007018 GO:0030286 GO:0006813 GO:0006810 GO:0009072 GO:0007169 GO:0016021

Length:

259

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00023

Exp number, first 60 AAs:

0.00023

Total prob of N-in:

0.05029

outside

1 - 259

Pi

4.846479

Theta

3.366353

Tajima's D

1.782122

CLR

0.001484

CSRT

0.866056697165142

Interpretation

Uncertain

Source	Sequence	Identity	Evalue
26822097	GFEAAGVTGPGGEPVKGSPYAADK	100.00	1e-10
26280517	FHMGNCAENTAK	100.00	1e-10
28467696	GFEAAGVTGPGGEPVKGSPYAADK	100.00	1e-10
26822097	ADTEKAPQPQPQQQIEQQPQAQQAK	100.00	7e-10
26280517	GFCFVYFEDMEDAK	100.00	7e-10
27102218	SVGDGEAVEFAVVAGEK	100.00	7e-10
28467696	GFEAAGVTGPGGEPVK	100.00	7e-10
26822097	IAVGIIGK	100.00	4e-05
26280517	SIETWIADDTSGDYKK	100.00	4e-05
25044914	SNIVTVIAPVNIAVIK	100.00	4e-05
27102218	NFQPGQGGQNQAQR	100.00	4e-05
28467696	SNIPAQAMGHR	100.00	4e-05
28556443	NFQPGQGGQNQAQR	100.00	4e-05
28556443	NFQPGQGGQNQAQR	100.00	4e-05
26822097	NFQPGQGGQNQAQR	100.00	6e-05
26280517	MYFTWDVVK	100.00	6e-05
27102218	ANIAAK	100.00	6e-05
28467696	NDTICSDIIVIGIPWK	100.00	6e-05
26822097	APQPQPQQQIEQQPQAQQAK	100.00	3e-04
26280517	SVAIDEETAEK	100.00	3e-04
27102218	ADTEKAPQPQPQQQIEQQPQAQQAK	100.00	3e-04
28467696	SVFVGNIPYEATEEK	100.00	3e-04
26822097	NDTKEDVFVHQTAIAR	100.00	3e-04
26280517	GEYISNSTQSTDRK	100.00	3e-04
25044914	GFDYYGIIGVK	100.00	3e-04
27102218	RGPPPNQGGAQGDEGQEGGIVPSQR	100.00	3e-04
28467696	GFDQQMAQAVTSEMEQK	100.00	3e-04
28556443	EDVFVHQTAIAR	100.00	3e-04
28556443	EDVFVHQTAIAR	100.00	3e-04
25044914	QNFENIVHPIINK	100.00	0.017
28467696	QNFFWGAK	100.00	0.017
28556443	SNKPVGTTIETTTNESQA	100.00	0.017

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics