Silkworm Genome Informatics Database

Gene

KWMTBOMO00337 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA000528

Annotation

PREDICTED:_eukaryotic_translation_initiation_factor_4_gamma_3-like_isoform_X1_[Amyelois_transitella]

Location

Bomo_Chr1(-):10266903-10269488 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.214

CDS

ATGATGGATGGAGTGGTGACACAAACGCGGCCGGTAGAATGTTATCACCCCACAGGCGCCGCTGGTACTCAGTATATACCGAATACAACCGGCGTGGCGCAAACATCGGCACAACCTACATTAAGAGTCCAGCCTACGCCTCAGCCATCGGCACCACCGACACCCCAGCAGGACATATCGAAAACAACTATGGCGGGTCACAACTACCCATCCCAAAATCAGAGTTCTGCTAATTCAAGGGCATCCCAATATGGAAACTTCCCATACAGACAACAACAGCAACAACCACAAACTACGAGATCTTCGACACATCCGAGGTGA

Protein

MMDGVVTQTRPVECYHPTGAAGTQYIPNTTGVAQTSAQPTLRVQPTPQPSAPPTPQQDISKTTMAGHNYPSQNQSSANSRASQYGNFPYRQQQQQPQTTRSSTHPR

Uniprot

H9ITE8 A0A2A4ISR7 A0A194QUY2

Pubmed

19121390 26354079

EMBL

BABH01007106 BABH01007107 BABH01007108 BABH01007109 NWSH01007254 PCG63027.1 + More
KQ461108 KPJ09277.1

Proteomes

UP000005204 UP000218220 UP000053240

PRIDE

H9ITE8

Pfam

PF02854   MIF4G        + More
PF02847   MA3
PF02020   W2

Interpro

IPR016024   ARM-type_fold        + More
IPR003891   Initiation_fac_eIF4g_MI
IPR037584   EIF4G1
IPR003307   W2_domain
IPR016021   MIF4-like_sf
IPR003890   MIF4G-like_typ-3

SUPFAM

SSF48371 SSF48371

Gene 3D

1.25.40.180

ProteinModelPortal

H9ITE8 A0A2A4ISR7 A0A194QUY2

KEGG

101742358 K03260 translation initiation factor 4G | (RefSeq) eukaryotic translation initiation factor 4 gamma

PATHWAY

03013 RNA transport - Bombyx mori (domestic silkworm)

GO

GO:0003743 GO:0000339 GO:0003729

PANTHER

PTHR23253:SF10

Length:

106

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00071

Exp number, first 60 AAs:

0.00071

Total prob of N-in:

0.50787

inside

1 - 106

Pi

4.735039

Theta

4.998577

Tajima's D

-0.774763

CLR

0.129264

CSRT

0.181740912954352

Interpretation

Possibly Positive selection

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics