Silkworm Genome Informatics Database

Gene

KWMTBOMO00334

Pre Gene Modal

BGIBMGA000699

Annotation

PREDICTED:_amyloid_beta_A4_precursor_protein-binding_family_B_member_1-interacting_protein_isoform_X2_[Amyelois_transitella]

Location

Bomo_Chr1(+):10191379-10219820 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.265

CDS

ATGGCGTTGGTAGAGGAAGTCGGTGCGGGCTCCACCGCTGACGATCCCGAAGCTCTTCTGAACGAGTGGCTTGGCGAACTGACCGTTCTTACTGCGGGTCTTAATTCAACCGGCGATGGTTCATTAGCTCTGAGGCCTCTTGAAATAGTCGCTCCACGCATCGACACCTATCGGTTCTCGATGGCAAATCTCGAAGAAACGCAAGACGCTGATCTTGACGCCATTCTGGGCGAACTATGCGCTCTCGATTCCGAATATGACGAAGAATTATCTAGAGTGTCATCAGGCTTTGCATCCGGATCAAAAGACAGGGTACCGAGAACCACTGAGCCCTGTACCGTGCGTCAGGAGAAGGACAACAGCGATGCGGCTTCGGGGATCACGCGCACCGAGTCCCCGGACAATGACTCCGCTTTCAGTGACACAGTATCCATGCTTTCGAGCGAATCTTCGGCTTCTAGTAGCGCGAGTGCGAAATGCAAAGCCTTAAAATTGAATTTACATCAAAATCAAAAGGACGCGAGCTTCCAACAAAAGGCGGACAAGATTAAATTAGCATTAGAGCGCATGCGAGAAGCAAATATCAAGAAACTGTTCATAAAAGCGTTTTCAATGGATGGATCTTCGAAGAGTTTATTGGTTGATGAGAAAATGACTTGTGGATATGTGACGCGTTTGCTGGCGGACAAAAACCACGTTAATATGGAACCGAAGTGGGCAATAGTTGAACACTTGCCTGATCTCAATATGGAACGAGTGTACGAGGACCACGAAATGTTAGTAGACAATTTAATGTTATGGACGAGAGAATCGAAAAACAAAATATTGTTTGCCGAAAGGCCAGATAAGATTTCGTTGTTCCAAGCCCCCGAAAAGTTTCTACTGAACGATAACGATCGGGGTCGTTCAAGTGAACAAGACGATCACTCAAGGCAAGTGATGCTAGAAGAATTTTTCGGACAAAACGGTGCCGGAGCCAGTACTGTCCCTTCTGTATCCGGACATCCGGTCCCGCCGATGGAGGGACCACTTTACCTGAAGAACGACTCCAAAAAAGGATGGAAAAAAATTTACTGCGTCCTCCGACCATCAGGGCTTTACTACTCGCCCAAAGACAAGGTGAAAACGTTGAAAGAACTCGTCTGCTTGGCCACTTTCGACACCAACGAAGTATACATAGGTCTGAACTGGAAGAAGAAATACAAGTCCCCAACAGACTACTGCTTCGCTATCAAACATCCGAGACTCCAGCAACCGAAAAGCGTCAAATTTATCAAGTTCTTGTGCGCTGAAGACCAGCAGACAATGGAAAGATGGATGACAGCTATGCGAATAGCTAAGCATGGAAGGCAATTGCTTGAAAATTACCGGTCCTTAGTTGAGGAGCTCACTCAAGAAGATTTAGATCATCTTGCTCACGCGCGTTCTTGTTCCATTACTTCAATACCGACAAAAACGAACAACGGTGTGACAAACATAAATAGTCCAGCTCAATCAACGTCAAGCAACATGAGTGTTGCCAACTCGGACATTAGCAGCGGGAGACATTCGCGTGCTTCTTCATCGAGCTCGAGTGGTTGTCTATCGGATGGAGGTACTGCTTCTGAAAGCGCTTTCGACTGTGAATTTCCTATGGGTACAATAAAACGCAAACCATCTATGAAACCCAACATTCCGCTAACGTGGATGACTCGACAATTGAAAGAGATGGTGGAGAAAGACGATATTACTTCAGAGGCTGACGGTATCGGTGATTCGGGGACACTCACCAGGAAGCCCAGGAAGAATCGCTGTGATGACTCTACACTGAAGCGCCATCATAATATTGATTCAACGGATACTAGTGTGTATGGCACAGCTACTACCGTGAGCATTACAAGTACAGAAAGTCCAGTCCGAAAGGAGCCTGTTTCTCCGACGTACGATCACTATGACACAATAACTCGCGACAGCTCCTTCAGAAACAGTACAGACAATAGTTCATCTCTGTACGGATACACCACAATATACGACAAAGTGCAGAAACAACAAGCTGAATGTACCGTTGAAGATTTGCCTTTGCCACCGCCCCCTGTCGTTGCAGATGTCCCAGACGCAATGTTCAGTTCAACACTGAGCCTCGACAGCCTTCCTCCACCGCCGCCACCGCTGGACGCGATTGAGGATTTGTCGGGATCTCTACTAAGCCTTCCCCCACCACCACCCGAGCACGCCATGGAGGCCAACAGTGGTCGAGTGCAAGACATCGTCAGTCAACTGACGGCACAACAAATAGAACAAGCTTCGCGAGCTGGTCAATGCAGAGTTACAGCTCGAACAAGTGAGCCGACCCGTTCCTTCCCGAGGCAACCCTCTCTCGACAGCGTCCACTCGGAGGCTTCGCGTAGCTCGTCACTCCCATCTGACAAAAGCATTTATGGCCCGCAAAACGTCGCGTATGGGGCCTGCCTAGTCGAGTTGCAGACTAAAAAATTAAGCAGCCCCTCCATTCAAAAAAAGGTGATCACACAAACTGAACCAACGAAGGAGCGAACGGGTTCTATAAAAAAAGTTAATTTTGCCGATGACTTACCGACGTGCTCCGAAAAGAAGGTCAAAAAGATCTCGTTCAATCTCAAAGAGCAACCTCCGCTTTCGCCGCGGAAACCGCCCCCGCCGAAACGTAACGAAAGCACTCGACTTACATCACCGAAAAAGCTAGTCGATTCAAACAGTAATCCTCCAAAGGAATTTCTAAAAGATCTGCAGAGGGTGATGCGGAAAAAATGGCAAGTCGCACAAAAGTGTAAACTCGAACCGGCAACAACTCCGCACGAGGTACTTGGTTTCCGTGAATATCCACTTGCGGATGATTACAAAGAGACGAGCGTGTCGATGTGGGTGCAGGAGCACTACGGCAGCGGCGTGGAGGACCCCTTCTACGAGAACGTGTATAGTGCGGAACAGACGGCAGTGCGACGCGAGGAACCCAAGCCCATAAAGAAGCGTCCACCACCAGCACCGCCGCGACGGAGCGACTCCACGCACCTGTCCACGCACCCGCACGCCTCAGCCGTACAGCCCACCGCTTGA

Protein

MALVEEVGAGSTADDPEALLNEWLGELTVLTAGLNSTGDGSLALRPLEIVAPRIDTYRFSMANLEETQDADLDAILGELCALDSEYDEELSRVSSGFASGSKDRVPRTTEPCTVRQEKDNSDAASGITRTESPDNDSAFSDTVSMLSSESSASSSASAKCKALKLNLHQNQKDASFQQKADKIKLALERMREANIKKLFIKAFSMDGSSKSLLVDEKMTCGYVTRLLADKNHVNMEPKWAIVEHLPDLNMERVYEDHEMLVDNLMLWTRESKNKILFAERPDKISLFQAPEKFLLNDNDRGRSSEQDDHSRQVMLEEFFGQNGAGASTVPSVSGHPVPPMEGPLYLKNDSKKGWKKIYCVLRPSGLYYSPKDKVKTLKELVCLATFDTNEVYIGLNWKKKYKSPTDYCFAIKHPRLQQPKSVKFIKFLCAEDQQTMERWMTAMRIAKHGRQLLENYRSLVEELTQEDLDHLAHARSCSITSIPTKTNNGVTNINSPAQSTSSNMSVANSDISSGRHSRASSSSSSGCLSDGGTASESAFDCEFPMGTIKRKPSMKPNIPLTWMTRQLKEMVEKDDITSEADGIGDSGTLTRKPRKNRCDDSTLKRHHNIDSTDTSVYGTATTVSITSTESPVRKEPVSPTYDHYDTITRDSSFRNSTDNSSSLYGYTTIYDKVQKQQAECTVEDLPLPPPPVVADVPDAMFSSTLSLDSLPPPPPPLDAIEDLSGSLLSLPPPPPEHAMEANSGRVQDIVSQLTAQQIEQASRAGQCRVTARTSEPTRSFPRQPSLDSVHSEASRSSSLPSDKSIYGPQNVAYGACLVELQTKKLSSPSIQKKVITQTEPTKERTGSIKKVNFADDLPTCSEKKVKKISFNLKEQPPLSPRKPPPPKRNESTRLTSPKKLVDSNSNPPKEFLKDLQRVMRKKWQVAQKCKLEPATTPHEVLGFREYPLADDYKETSVSMWVQEHYGSGVEDPFYENVYSAEQTAVRREEPKPIKKRPPPAPPRRSDSTHLSTHPHASAVQPTA

Uniprot

H9ITW9 A0A2H1WPA3 A0A437B166 A0A2A4J1T2 A0A212F443 A0A194QUZ7 + More
A0A0L7KY26 A0A194PSZ6

Pubmed

19121390 22118469 26354079 26227816

EMBL

BABH01007102 BABH01007103 ODYU01010061 SOQ54901.1 RSAL01000227 RVE43943.1 + More
NWSH01003952 PCG65628.1 AGBW02010446 OWR48505.1 KQ461108 KPJ09292.1 JTDY01004460 KOB68132.1 KQ459594 KPI96088.1

Proteomes

UP000005204 UP000283053 UP000218220 UP000007151 UP000053240 UP000037510 + More
UP000053268

PRIDE

H9ITW9

Pfam

PF00788 RA + More
PF00169 PH

Interpro

IPR029071   Ubiquitin-like_domsf        + More
IPR001849   PH_domain
IPR011993   PH-like_dom_sf
IPR039664   GRB/APBB1IP
IPR039665   PH_APBB1IP
IPR000159   RA_dom

SUPFAM

SSF54236 SSF54236

Gene 3D

2.30.29.30

CDD

cd01259 PH_APBB1IP

ProteinModelPortal

H9ITW9 A0A2H1WPA3 A0A437B166 A0A2A4J1T2 A0A212F443 A0A194QUZ7 + More
A0A0L7KY26 A0A194PSZ6

PDB

4GMV E-value=3.25404e-66, Score=643

KEGG

101741823 K23488 Ras-associated and pleckstrin homology domains-containing protein 1 | (RefSeq) abnormal cell

GO

GO:0007165 GO:0006508 GO:0008237 GO:0007018 GO:0030286 GO:0006813 GO:0006810 GO:0009072 GO:0007169 GO:0016021

PANTHER

PTHR11243

Length:

1023

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00023

Exp number, first 60 AAs:

0.00023

Total prob of N-in:

0.00002

outside

1 - 1023

Pi

1.664884

Theta

23.591613

Tajima's D

-2.364151

CLR

0.563895

CSRT

0.00179991000449977

Interpretation

Possibly Positive selection

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics