Silkworm Genome Informatics Database

Gene

KWMTBOMO00330

Pre Gene Modal

BGIBMGA000530

Annotation

PREDICTED:_uncharacterized_protein_LOC101744279_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr1(-):9997402-10013864 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 1.432 Nuclear Reliability : 1.52

CDS

ATGCACGCGGTCACCACGGTACTAGTAGCAGCCATCGGGATATGTGCTATCGCCAAATCCCCAGGGGCTACAACAGCGCCGACAATGCCACAAACTATGAACTCCGGCGAAGAGGATAAACAAATTCCTTCTCCGATGAATTACTTCAGGAATGTTATCATACCCAAATACATGATTCCCCACTACATTAAATACGTCGATAAACCTGGATTTTTGCCGCAACCAATCGTATTCACAGATTCAAAACCAGACCTGCTGACTAAGGAAATAATTCACCTTAATGAAATGGAAACCGATGAAAATGATGAAAAGGAATTCAACGACTTGATAACTAAAAACTTCATGTCCCGCATAATGGAAGTCGGAAGCCCCGTCCCAAAACAAGTTTACTCGAGTGGCGGTTCAAATAAAGCCGAAATAAACCTGAAACATGCTAACATACCCGCCCCACATTCAGACATAAACTCAGCCAGACCCATTGTGCAGCCCCAATCCTTCAATATTCCCGATGAACCTAAAGAAATAACTGAAAAAGAAACAAAAGGTTTTGCTCTCACTCCATTCAACAAAGAATATTACGAGGAACAAAATATTTCCGAGAATACCAACGAAACTATGCCAAATGATTCTGTCGAAATTGCTGAACTCGAGGCTTTACCTAAATTAGAACCTCGACAGATCCGCCAGAATCCCAACCTTGGAAAGGCCAAAGCCCTGGTTGCTGACGATCTGGATAAACTTAAAATTGGACTCTATGGCGACGATGGTTCCACGAATAAACCTCATCATATTCACTTGCTGGAATCCGGTTCTTCTGATCCTTCCGACTCTATTTTTGGTGTTGCTCTGATGGCGGCCATAGGAACAGCCCTCACCATGGCCATTCTAGGATTTGCTTTTGGCTGGTACACGTTATCCAAAAGAGCCAAGGCTGCTGCTGATGTAGATTACCCGGCTTACGGCGTGACCGGACCTACTGTCGACAGCTCCGGCGACCGCAAGCTAGCTCAGTCCGCCCACATGTATCACTACCAACACCAGAAACAGCAAATCATTGCAATGGAGAGGAATGGACTTGACCAACGCCACGGCTCTATGTCGGACCCGGAATCTGATGAGGAGAACGAAGAAGGAGATTACACCGTTTATGAATGCCCCGGGTTTGCTACCACCGGAGACATGGAAGTGAAGAATCCGCTCTTCTCCGAGGACGCCACTCCTGCTACTCCTGGAAAGTGCGAGATCGTCAAGCAACAACCCAAAAAGTAA

Protein

MHAVTTVLVAAIGICAIAKSPGATTAPTMPQTMNSGEEDKQIPSPMNYFRNVIIPKYMIPHYIKYVDKPGFLPQPIVFTDSKPDLLTKEIIHLNEMETDENDEKEFNDLITKNFMSRIMEVGSPVPKQVYSSGGSNKAEINLKHANIPAPHSDINSARPIVQPQSFNIPDEPKEITEKETKGFALTPFNKEYYEEQNISENTNETMPNDSVEIAELEALPKLEPRQIRQNPNLGKAKALVADDLDKLKIGLYGDDGSTNKPHHIHLLESGSSDPSDSIFGVALMAAIGTALTMAILGFAFGWYTLSKRAKAAADVDYPAYGVTGPTVDSSGDRKLAQSAHMYHYQHQKQQIIAMERNGLDQRHGSMSDPESDEENEEGDYTVYECPGFATTGDMEVKNPLFSEDATPATPGKCEIVKQQPKK

Uniprot

H9ITF0 A0A2A4JWA5 A0A2H1VJX3 A0A212FHH4 A0A194PRY7

Pubmed

19121390 22118469 26354079

EMBL

BABH01007088 BABH01007089 NWSH01000486 PCG76066.1 ODYU01002947 SOQ41091.1 + More
AGBW02008503 OWR53179.1 KQ459594 KPI96072.1

Proteomes

UP000005204 UP000218220 UP000007151 UP000053268

PRIDE

H9ITF0

Pfam

PF06809 NPDC1

Interpro

IPR009635 NPDC1

ProteinModelPortal

H9ITF0 A0A2A4JWA5 A0A2H1VJX3 A0A212FHH4 A0A194PRY7

KEGG

101744279 no KO assigned | (RefSeq) uncharacterized LOC101744279

GO

GO:0016021 GO:0007186 GO:0007018 GO:0030286 GO:0006813 GO:0006810 GO:0009072 GO:0007169

PANTHER

PTHR23352

SignalP

Position: 1 - 18, Likelihood: 0.973744

Length:

422

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

32.31938

Exp number, first 60 AAs:

9.54663

Total prob of N-in:

0.45137

outside

1 - 280

TMhelix

281 - 303

inside

304 - 422

Pi

16.121391

Theta

17.090014

Tajima's D

0.157689

CLR

0.032231

CSRT

0.422728863556822

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics