Silkworm Genome Informatics Database

Gene

KWMTBOMO00320

Annotation

PREDICTED:_ras-GEF_domain-containing_family_member_1B-like_[Bombyx_mori]

Location

Bomo_Chr1(-):9818806-9823584 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.593

CDS

ATGTTTCAGTGGAGTCGAACGTCAGCGGTTTGCGGTCAACAGTTGAGGCAGCTCGAATTGTGCGTTGAACCTACAGGAAATCATGCGCGATATCGTGCGGCCCTGGCGGCTGCTCCTACTGAAACAGCCGTGCCGTTGCTTTCTGTTACGTGTAGAGACTTGCATTTTGCTAATCAGGGATCCCCTTCCAGGTTGTCCGGTAATCGCGTGAATTTTGAAAAGTGCGCCCTGTTGAGTAAGCACGTTAGTACGCAGTTAGCTAGCAGACGGCTCACCACTGATCAGTCACCGACACCCGCGCCTCCTTCACCTCACCCCTCTGTCTGGAGATACCTCAACGACAGACCTACTCTCACCGAACCAGCATTGGAATTGGTATCGTTTGAACGCGAGCCCCCTGTTGATCATCTGGAGAAAGAACGACTAAAACGTCTTCGCGGCTCGAGCTAA

Protein

MFQWSRTSAVCGQQLRQLELCVEPTGNHARYRAALAAAPTETAVPLLSVTCRDLHFANQGSPSRLSGNRVNFEKCALLSKHVSTQLASRRLTTDQSPTPAPPSPHPSVWRYLNDRPTLTEPALELVSFEREPPVDHLEKERLKRLRGSS

Uniprot

A0A2A4JNA8 A0A2H1WUJ3 A0A212FHF1 H9ITF5 A0A194PRK6 A0A194QWG0 + More

Pubmed

22118469 19121390 26354079

EMBL

NWSH01001054 PCG72890.1 ODYU01011155 SOQ56723.1 AGBW02008503 OWR53171.1 + More
BABH01007074 BABH01007075 KQ459594 KPI96081.1 KQ461108 KPJ09300.1

Proteomes

UP000218220 UP000007151 UP000005204 UP000053268 UP000053240

PRIDE

H9ITF5

Pfam

PF00618 RasGEF_N + More
PF00617 RasGEF

Interpro

IPR001895   RASGEF_cat_dom        + More
IPR036964   RASGEF_cat_dom_sf
IPR008937   Ras-like_GEF
IPR023578   Ras_GEF_dom_sf
IPR000651   Ras-like_Gua-exchang_fac_N

SUPFAM

SSF48366 SSF48366

Gene 3D

1.10.840.10

CDD

cd06224 REM

ProteinModelPortal

A0A2A4JNA8 A0A2H1WUJ3 A0A212FHF1 H9ITF5 A0A194PRK6 A0A194QWG0 + More

KEGG

101741018 no KO assigned | (RefSeq) ras-GEF domain-containing family member 1B-like

GO

GO:0007264 GO:0043547 GO:0005085 GO:0016020 GO:0016021 GO:0005737 GO:0006813 GO:0006810 GO:0009072 GO:0007169

PANTHER

PTHR23113

Length:

149

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00739

Exp number, first 60 AAs:

0.00739

Total prob of N-in:

0.25355

outside

1 - 149

Pi

27.287795

Theta

15.227446

Tajima's D

-1.392447

CLR

0

CSRT

0.0729963501824909

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics