SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00319  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA000691
Annotation
PREDICTED:_collagen_alpha-1(I)_chain-like_[Bombyx_mori]
Location
Bomo_Chr1(+):9803835-9811704      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 2.511
 

Sequence

CDS
ATGGCGCTCCTAAGCCAACGTCGAGCCGGTCTTGCTTCTCATTTTGCTATAATCATATGTTACTTTTGTGTATTGCAGTCTACAACTTCTCATGAAATTTCATCTGGTTATTATTTGATTTGCCGCGACACAAACACGCAGCTATGTGTTACTTGGCTAATCCAATACTCCCAAGCTATGAAGTTGGCTACAGAATTGAGTACAAAGAAAGTATCAACAGATGTTTGTGGATTCAGCCAATTGAAGCCTATGGGGCAAAATCGGTCATACGTAGAGGTATACCCGATTGACGAAAGTAAGCCGGTTATGCGCTGTCCTATAAAAAGTTTGGTGGTGAAGTACAACAAAGATCTGCTTAATTTGAAGAGCATACATGAAATACACAGAGTCCGTCGTCAAATTCCCTACGCATTACGAGGACGTTACAGGGGACAGACCCAATCTCAGTATCTGGCCATAGACCATGGAAACGGAAAAGATGATGGAAAAGCCGAAGCGCAATCAGCTGCTGACTCCTCTAGAGCTAGCGTCAGTGGAACGAGCGGAATGGGTCAAGCACAAAGTCAATCCATGTATGACCCGACCTGCGATGACTGTGTCGGCCGATCTACTGGCATCGATACCTCAAAACAAAAACCGTTGGGAGATTCTCACGGCGGCATTCCATCAGGATTACCTTCAGGAGCGATCGGCACACCAGGAAACAATTTACCCTTTGATCCAACAGGGGGAAGTCGATTAACAGGAAATGGAGGTTACGGGCCTAATGAAAATGGCGAACGTTATGGTCCTGGAAGTACTGGAATCAATGGTGCTTATAGACCACCGGGCGCTGGAGGAACTTATGGTCCTAATCAAATTGGGAACGGAGCTTTTAATCCAGCTCTAAATGGTATTCCAGGTATTCGTGTACAGGGACCAAATACAGGTTATGGAATAAGCCCTGGGGGTGGTTACACCGGATCATCTCCTGGGTTGGGTAATCAGTATTTGCCACCTTCAACTAGTACTAATTACGAACCAGTAAAAGGCAGCTATGGTCCAAGGCAAAATGTTCCTGATGGGTCTATAAATGGCTACCTTCCTGTACCTAGTGGTAGTAATGTATACGGGCCAAATCCTAACTCTGGCTCTGGTCACGGAATCGTTTCCAATATACCAGGAGGTGGCTATGGTCAAAATGGAAACTACGGACCCAACCAAAATGGAAATATGCCTTATGGTACAAACCAAGTCCCTTCACAAGGTACGAAAACGCCTGCTCATGGAGGAGGTCCAAGTGGGATCAATACGGGGTTAAGTTGGCCATCCACAGGAACATTTACACGTCCGGGATCTCAGAATACACCTAATGGACCAAGTTCTCAAGGCAACGCAAACGAACCTCATAATTTACTAGCCCCTAATGCTGTTTACGGACCTGGTGGCAATAGACCATATCAAACGGATGGCCAAAGTAACTACCAAACAAAACCAAATAACGCGTACGGAACTACTGGTGGATACACTCCTGGATCGAATGGTCCGTTTAATCCAGCTGACATAGGTACTAACAATAATGCAAACAAATATGGTCAGTTAAATCCAAATAATCAGAACGGCCTACAAAGTCCCGGTACTTACAGCCCTACGAGTACCGGACAAAACCACATGCCTGGAGTTATCGGTAGCCAAAATGGCCTACAAGGACCTGGAGGACAGTATGCGCCTACAAATACCGATGGGCAAATACCTGGAGTCCAATATAATCCTGGGAGCACAGTAGGTCATAATGGCTTGCCTATTCCTGGAGGTCTGTATAATTCTGGAATTGGAGGAGGTCCAAACAGTTTTCCTGGAACTCCAGGACAGTACCAACCTGGATCCACAGATGGTCATAATATTGTAACAGGCCCTGGAGTTCAATACAGACCAGATATCGTTAGTGGTCAAAACGGCTTACAAGGTCCCGGTAGTCAATATGGAGGTGGTCAAAGTAGGAATCAAGAGCCCGGAGGTCAATATGCTCCTGGAAATCAAAACATTATGCAAAGGCCAAGTGGACAGTATGGACCCGATAGTGCTGTTGGACAAGGTATTCAAGAACCAGGAAATATGTATGATTCTAGACCAAATAATCAAAGTCCTCAATATGGACCTGGAATCGGAATCGGTCCGAACGGATTACAAGGGCCAACTGGTCAGTATAGGCCTGGATCTTCCGGAGGTCAAAATGTTGTATCAGGCCCTGGAGGACAATATGGTAGTTCTGGAACTCAATATGGTCCAGGTGGTCAAAATGGAATTCAAGGTCCTAGTAGTCAATATGGTCCAGGTGGTCAAAACGGAATTCAAGTTCCTGGAACTCAATATGGTCCAGGGGGACAAAATGGAATACAAGTTCCCGGAACTGAGTATGGTCCAGGAGGTCAAAGAGGAATCCAAGGTCCTGGAACTCTGTATGGTCCTAATGGACAAAATGGAATCCAAAGTCCAGGAACTCAGTATGGTCCAGGGGGACAAATAGGAATTCAAGCACCTGGAACTCAATATGGACCAGGTGAGCAAAATGGAATCCAAAGTCCTGGAACTAAGACTGGTCCAGAAGGACAACTTGGAAACCAAGGGCCAGGGACACAGTATGGTCCAGGTGGACAATATGGAATCCAAGGGCCAGGAAATCAGTATGTCCCCGGCGGACAAGGTGGAATCCAAGCTCCTGTAAGTCAATATGATAATGTTCAAGGTGGAATTCGAGGACCAGGAACTCAGTATGGTCCAAGCGGACAAAGTGGCCTTCAAGGGCCCGGAGGCCAAAATGGCATACAATATCCAGGAGGAAGTTATGGCACCGGCGTCCAAAGTGGTTTGCAGAAACCAGGTGGCGTTTATGGTTCTGGGTTAAATGGAATCCAAAACAATGGCGTACCTGGAACGGGTGATAATTATGTTCCTGGAGGCCAAAGTAATGTGCCAGGTGGTTACGGCATCTCTAATAGACCTTTTAATCTTGATGGTACTGGGAGTCAACAAGGTCCATATAACCCATCATTACCAGGACAAAATGGACCATATGGGACTAATATGGTAGGTCAAGGATCAGGTTCAATTAGTCCTGGCACTACTGGCTTAGGGAACACAGGTAATCAAAATGGACAGTACGGACCTAGTGCTGGACCTTACCCTAACCAATATGGTAATGACTTATCCAACACGGGAGGTGGTTCTGGACAGTATGCCAATGTTCCTTATGGATACGGTAATAATCAAGCTGGTGCACCACAGAATGTTGTCGATCCAAATTCAGCTCTTTTGATAGATGGTGACGATTCTGCAGCTGAAGCTAGCGTTTCTCAAGCTTCAAACGGTACAACGGCTATAGCTTCCTCAAAAGGAGGAAATGATAAAGGACGTGCTCAAACACATGTGCAAGGAGCTTATACTGGCGGTGGCTCATTTTCTGCTCAAGCCGAAATTAGTGGATCCGAGACAGGTTCCATCTTGACTGGTTCGCAAAGCGAAGGAGTGATGCATTCTTCCAATACACAAGTACAGGGTAGCTTGAAAGGTGGCATGGCGGACGCTCAAGCTCGTGGTCCAGGTAGCACTTCGTCTCAAGCTCAGATTGGTTTTACACCGTATACACATGGAGATGCATCTCATGATGTACAAAAATCTCCATTTGTGGGCGGGGGAACTGCAGCTGCACAATCAAGTGGTCGAACGGGCTCCTCACAATCACAATTACGTGGAACATTTAAATATGGAATTACTTATAACGGAGGAGCTCAAGCAGGTGCCAGCTTAGACAAAGACACAGTCTTTTCTAATAGACTTCCATTTGATAAAATTGATGTTTATGATGAAAAAAACAAAAATATTAACATCGAGACGACGGAGAAATCATTAGACTTGTTACCTACTGAATCGACTGAAATCCCACTAACTACGGAACACTTGAGCTATGATATTCCTTCAACTACACCGTTGGATATCAGTGCAAACACGGAAAAAATAGATCCAGTATATTCTGAAAATAACGACGAATATGGGTCACATTCTCACTCTGATCATCACAAAACTGAATTTGCGGCATCTACACCAACTCGTTCACCTCCCGTTGAAAGTAGACGCTCTTTTCAGTCCGCTTATGGCACTAATAGTGGAGATTATGATTATACCACTGATAAAGAAGAAAACCAACCTGAGGAATATGATATGGATGACGGGTTTGCACCTGAAGGTACAGACACAAGTGATAACGATCAAGGAGAATTTGCAAATTATAATGAATTTTCTAGAGACTCAGAAACGCACCAATCTCTTCATTCGCCGAAGCGAAAAGGCCTGGAAGTAAGGCAAACAACAGGCGGCAACACGCAACATATTGTCTTGGGGGCACTTCGAGACCAAAATGCAGAGATTACACAGAGAAACTCTGAACGTCCTGATGAGAGTAAAATATATCAGCCTGGTGAGCGTGTACCAGGTACTGGCGGTTATACAATACCAGTTGGATTCACAGGCAGCGTTAAATCGGTTGCTTCCAAAGATAAAACTTACGTAGTAGGGTCAAAAGATTCACCATCTCAAGCGCAGACTGTATCCCTTACTCCTGGCTCTGGTAAAATAAAATATACTTATCCAACTACACACACCAGAAATGTGAGTCCTAAAGATTTGCGGTCACTTTACAATGTTAAACCAGATGATAATAATCGATACGTATCTGTTTCAAAATCAGTAACACGCGATTTAGACAGTGATAATAATATAAGGAAACAATATTCACACACCTACTATACAAAATCGTCATCTTGTGGATATTTTACTTTTACTTGTAATATGGTGAGTGGTGCTGAAGGCAAAAAAAAGGTTTGTAAGCCAAAAATTCCAACAAATCCTGATGGAACTCCTATGAGATGTTAA
Protein
MALLSQRRAGLASHFAIIICYFCVLQSTTSHEISSGYYLICRDTNTQLCVTWLIQYSQAMKLATELSTKKVSTDVCGFSQLKPMGQNRSYVEVYPIDESKPVMRCPIKSLVVKYNKDLLNLKSIHEIHRVRRQIPYALRGRYRGQTQSQYLAIDHGNGKDDGKAEAQSAADSSRASVSGTSGMGQAQSQSMYDPTCDDCVGRSTGIDTSKQKPLGDSHGGIPSGLPSGAIGTPGNNLPFDPTGGSRLTGNGGYGPNENGERYGPGSTGINGAYRPPGAGGTYGPNQIGNGAFNPALNGIPGIRVQGPNTGYGISPGGGYTGSSPGLGNQYLPPSTSTNYEPVKGSYGPRQNVPDGSINGYLPVPSGSNVYGPNPNSGSGHGIVSNIPGGGYGQNGNYGPNQNGNMPYGTNQVPSQGTKTPAHGGGPSGINTGLSWPSTGTFTRPGSQNTPNGPSSQGNANEPHNLLAPNAVYGPGGNRPYQTDGQSNYQTKPNNAYGTTGGYTPGSNGPFNPADIGTNNNANKYGQLNPNNQNGLQSPGTYSPTSTGQNHMPGVIGSQNGLQGPGGQYAPTNTDGQIPGVQYNPGSTVGHNGLPIPGGLYNSGIGGGPNSFPGTPGQYQPGSTDGHNIVTGPGVQYRPDIVSGQNGLQGPGSQYGGGQSRNQEPGGQYAPGNQNIMQRPSGQYGPDSAVGQGIQEPGNMYDSRPNNQSPQYGPGIGIGPNGLQGPTGQYRPGSSGGQNVVSGPGGQYGSSGTQYGPGGQNGIQGPSSQYGPGGQNGIQVPGTQYGPGGQNGIQVPGTEYGPGGQRGIQGPGTLYGPNGQNGIQSPGTQYGPGGQIGIQAPGTQYGPGEQNGIQSPGTKTGPEGQLGNQGPGTQYGPGGQYGIQGPGNQYVPGGQGGIQAPVSQYDNVQGGIRGPGTQYGPSGQSGLQGPGGQNGIQYPGGSYGTGVQSGLQKPGGVYGSGLNGIQNNGVPGTGDNYVPGGQSNVPGGYGISNRPFNLDGTGSQQGPYNPSLPGQNGPYGTNMVGQGSGSISPGTTGLGNTGNQNGQYGPSAGPYPNQYGNDLSNTGGGSGQYANVPYGYGNNQAGAPQNVVDPNSALLIDGDDSAAEASVSQASNGTTAIASSKGGNDKGRAQTHVQGAYTGGGSFSAQAEISGSETGSILTGSQSEGVMHSSNTQVQGSLKGGMADAQARGPGSTSSQAQIGFTPYTHGDASHDVQKSPFVGGGTAAAQSSGRTGSSQSQLRGTFKYGITYNGGAQAGASLDKDTVFSNRLPFDKIDVYDEKNKNINIETTEKSLDLLPTESTEIPLTTEHLSYDIPSTTPLDISANTEKIDPVYSENNDEYGSHSHSDHHKTEFAASTPTRSPPVESRRSFQSAYGTNSGDYDYTTDKEENQPEEYDMDDGFAPEGTDTSDNDQGEFANYNEFSRDSETHQSLHSPKRKGLEVRQTTGGNTQHIVLGALRDQNAEITQRNSERPDESKIYQPGERVPGTGGYTIPVGFTGSVKSVASKDKTYVVGSKDSPSQAQTVSLTPGSGKIKYTYPTTHTRNVSPKDLRSLYNVKPDDNNRYVSVSKSVTRDLDSDNNIRKQYSHTYYTKSSSCGYFTFTCNMVSGAEGKKKVCKPKIPTNPDGTPMRC

Summary

Uniprot
H9ITW1  
Pubmed
19121390   
EMBL
BABH01007073   
Proteomes
UP000005204   
PRIDE
H9ITW1   
ProteinModelPortal
H9ITW1  

Ontologies

KEGG
101743556    no KO assigned | (RefSeq) collagen alpha-1(I) chain-like
GO

Topology

SignalP
Position:   1 - 30,         Likelihood:  0.742699
 
 
Length:
1635
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
5.39061
Exp number, first 60 AAs:
5.38433
Total prob of N-in:
0.26561
outside
1  -  1635
 
 

Population Genetic Test Statistics

Pi
1.753561
Theta
3.127984
Tajima's D
-1.150165
CLR
0
CSRT
0.104844757762112
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
28556443 TPAHGGGPSGINTGLSWPSTGTF 100.00 5e-17
26280517 ASSEIQFSIR 100.00 1e-12
26280517 GNETVQITAK 100.00 2e-11
28556443 DDGKAEAQSAADSSR 100.00 2e-11
28556443 SPFVGGGTAAAQSSGR 100.00 5e-10
28556443 SPFVGGGTAAAQSSGR 100.00 5e-10
28556443 VQGPNTGYGISPGGGYTGSSPGLGNQYLPPSTSTNYEPVK 100.00 1e-08
26280517 NQDEIEYHAAK 100.00 2e-05
24402669 NQEAIAAEIGFFHPR 100.00 2e-05
28556443 LTGNGGYGPNENGER 100.00 2e-05
28556443 GQTQSQYLAIDHGNGK 100.00 2e-05
26280517 IITGIQAIDSINSK 100.00 3e-04
24402669 SYVASVGIATPIAVIPAIESR 100.00 3e-04
28556443 GPGSTSSQAQIGFTPYTHGDASHDVQK 100.00 5e-04
28556443 LTGNGGYGPNENGER 100.00 0.005
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