Silkworm Genome Informatics Database

Gene

KWMTBOMO00316

Pre Gene Modal

BGIBMGA000536

Annotation

PREDICTED:_uncharacterized_protein_LOC106133971_[Amyelois_transitella]

Location

Bomo_Chr1(-):9779690-9785174 View in EpiBrowser

Location in the cell

PlasmaMembrane Reliability : 4.181

CDS

ATGTTCAGACCAACAAGGAAACAGCTCCCGGTCAATTTGGTCCTTACCGCTCTGCTGACCAGCGGCATAACAATAGTATGTTCAATATCTTACATAGTTCTCAGTGCATTATCATTAATTTACAGAAGTAATTGCCACATTGGTTTACCAGAGAATTTATCAAATTCGGATTTATTTTGGATTCACCTTTATAGATTATATATTCAAGAAGGATGTGACCAGTCTATATACGCAGAGGATCTGACCACCTCAGGAACGGTGTTCATATTATCCGCTATCACTTTAGCTATCTCAATCGTCTTATTAATCGTATCTGGATTTTTAACATCAGTGGTACAGAACAATGAAAGGATTCAGTATGTCAATCTTGCTGTCTACGGATATATTATAGTTAGCTTACTATCCTTGATTGTGGACCTTACATTTGGAACTTACTTTGGCATTGACTACAAAACCCTTAGCGACCAACTGGATGCCTCTGACGGGAATTTGGGCAGTATTTACGCAAAAGAAATCACGCGACAAGGTGCATTCTATTTAATGACCATAGTATTAAAAGGATATGTGTATCACGTAATCAATCTTGTGTTGATAATACTTCTGGCTATGTACACGTTGGAATATGGAAGCGCTTTGCAAAAAAATGAGCACTCAATACACAAAATGGGCATATTGAACGCATTCGAGACAAATAGAAGAATAAATGAGGGTGAGAGACGACCGCAGTATTCAGACATGACGTATCCACCTTTTGTAAGAAGTATGCAAGTCAACCACGGCTTCAATAACGACGATGAGCTGCCACGTATCCCAACACGGGATCCAATAAGAATCGAGAATTCGTCCAACCGATCGTTCGATCGATCTGATTCGTGGCATCACAGCCGTTCCGTCCCCGATCCGGCACAAAGTGGTCGTCCATTCTCCTACTTGGAGGAGATCAAACGAACGGTGCCTGTGCGGCCATCGACTTCTCCCGAAGAAGATCCTCGGTGGCGTAGGGAATGGACTGCTAACACAGGACCCCCGCTACCGGCGCCGGATTATAGTCCTCAACAACCTCGAAGACTCAAATCAGCCCTGAAATCGGCTTACATGTAA

Protein

MFRPTRKQLPVNLVLTALLTSGITIVCSISYIVLSALSLIYRSNCHIGLPENLSNSDLFWIHLYRLYIQEGCDQSIYAEDLTTSGTVFILSAITLAISIVLLIVSGFLTSVVQNNERIQYVNLAVYGYIIVSLLSLIVDLTFGTYFGIDYKTLSDQLDASDGNLGSIYAKEITRQGAFYLMTIVLKGYVYHVINLVLIILLAMYTLEYGSALQKNEHSIHKMGILNAFETNRRINEGERRPQYSDMTYPPFVRSMQVNHGFNNDDELPRIPTRDPIRIENSSNRSFDRSDSWHHSRSVPDPAQSGRPFSYLEEIKRTVPVRPSTSPEEDPRWRREWTANTGPPLPAPDYSPQQPRRLKSALKSAYM

Uniprot

A0A2A4JLP5 A0A1E1W673 A0A212FHI6 A0A194R9N3 A0A194PWC1 A0A1L8E9Y7 + More
A0A1L8EAA8 A0A1L8EIR0 A0A1L8EIL9 A0A1L8E9T1 A0A1L8EIU3 A0A336MN33 A0A1W4UWW2 A0A1L8D9S7 A0A1L8DA46 B4ITH2 A0A0R1EB56 A0A0L0CR68 A0A1J1IUW5

Pubmed

22118469 26354079 17994087 17550304 26108605

EMBL

NWSH01001054 PCG72901.1 GDQN01008581 JAT82473.1 AGBW02008503 OWR53167.1 + More
KQ460473 KPJ14543.1 KQ459596 KPI95430.1 GFDG01003258 JAV15541.1 GFDG01003257 JAV15542.1 GFDG01000251 JAV18548.1 GFDG01000252 JAV18547.1 GFDG01003259 JAV15540.1 GFDG01000253 JAV18546.1 UFQS01001434 UFQT01001434 SSX10871.1 SSX30549.1 GFDF01010873 JAV03211.1 GFDF01010874 JAV03210.1 CH891698 EDW99685.1 CH891697 KRK05187.1 JRES01000036 KNC34712.1 CVRI01000058 CRL02934.1

Proteomes

UP000218220 UP000007151 UP000053240 UP000053268 UP000192221 UP000002282 + More
UP000037069 UP000183832

Pfam

PF01597 GCV_H

Interpro

IPR011053   Single_hybrid_motif        + More
IPR000089   Biotin_lipoyl
IPR003016   2-oxoA_DH_lipoyl-BS
IPR002930   GCV_H
IPR033753   GCV_H/Fam206
IPR017453   GCV_H_sub

SUPFAM

SSF51230 SSF51230

CDD

cd06848 GCS_H

ProteinModelPortal

A0A2A4JLP5 A0A1E1W673 A0A212FHI6 A0A194R9N3 A0A194PWC1 A0A1L8E9Y7 + More
A0A1L8EAA8 A0A1L8EIR0 A0A1L8EIL9 A0A1L8E9T1 A0A1L8EIU3 A0A336MN33 A0A1W4UWW2 A0A1L8D9S7 A0A1L8DA46 B4ITH2 A0A0R1EB56 A0A0L0CR68 A0A1J1IUW5

KEGG

101740601 no KO assigned | (RefSeq) uncharacterized LOC101740601

GO

GO:0016021 GO:0005960 GO:0019464

PANTHER

PTHR11715

Length:

366

Number of predicted TMHs:

4

Exp number of AAs in TMHs:

91.09063

Exp number, first 60 AAs:

23.09133

Total prob of N-in:

0.98096

POSSIBLE N-term signal

sequence

inside

1 - 11

TMhelix

12 - 34

outside

35 - 85

TMhelix

86 - 108

inside

109 - 120

TMhelix

121 - 143

outside

144 - 189

TMhelix

190 - 212

inside

213 - 366

Pi

0.862389

Theta

5.505569

Tajima's D

-2.434311

CLR

0.007879

CSRT

0.000749962501874906

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics