SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00315
Pre Gene Modal
BGIBMGA000689
Annotation
PREDICTED:_ER_degradation-enhancing_alpha-mannosidase-like_protein_3_isoform_X1_[Amyelois_transitella]
Full name
alpha-1,2-Mannosidase      
Location in the cell
Cytoplasmic   Reliability : 2.029
 

Sequence

CDS
ATGGCTTTCCCCGTTTTATTAATAATGTTCGTTACGATCGTTTTGGTTAAAACCGAAGAGGAAACTTCAGGATTACGTATGTCAAAGGCGGAGAGACTAAGCTTAAGAGATGAATCAAGGCAGATGTTCTATCATGCTTATCATGCTTACATGGAGAATGCATATCCAGCTGATGAACTGATGCCTCTCAGTTGCAAGGGCAGATGGAAAGGAATTACACCGAGTCGTGGAGATATGGATGATGCTTTAGGAAATTTCTCATTGACATTGGTGGACAGCTTAGACACTTTAGTTGTGATGGGGGACTTTTCGGAATTTAATCATGCAATCCAACTCGTTATAAAAGATGTCTCTTTTGACCAAGATATTGTTGTTTCAGTCTTTGAAACAAATATTAGGATGCTGGGGGGTCTATTGTCTGCTCACGTATTGGCGGAAACGTTGAAGAGCGATATTCCATTATTGCAATGGTATAACAATGAATTGTTGACGATGGCAGAAGATTTAGGGAAAAGGTTGTTACCTGCTTTCAATACATCCACTGGCATACCTCATGGAAAGATAAACCTCAGACATGGTATACGAGACTTAACCGAATCACGGGAGACATGCACTGCGTGCGCGGGAACGATGATTCTAGAGATGGCAGCTCTGACACGACTCACCGGAAACCCTATTTACGAACAGAAAGCGCATAAATCTATGGATCGTCTCTGGAAAATAAGACACAGAACCTCGGACCTCATGGGGACAGTTATAAACATTCACTCCGGTGACTGGGTTCGTAAAGATTCCGGAGTCGGTGCCGGAATAGACTCTTACTATGAATATTGCTTGAAAGCATACATACTCCTTGGTGATGAAAAATATCTTGCCCGATTTACTAGGCACTACAACGCCATCATGAAGTACATAAGTAGAGGTCCCGTAATGTTGGCCGTGCACATGCACCGACCGCATCTCCAGTCCCGTAATTTCATGGATGCCCTGTTGGCGTTCTGGCCTGGGCTACAGGTACTACTGGGCGACGTCCGACCGGCCGTCGAAACTCACGAGATGCTCTACCAAGTAATGCAGAGGCACACTTTCATACCGGAAGCTTTCACTTCCGACTTTCAGGTGCACTGGGGACAGCATCCGTTGCGGCCAGAGTTTTTGGAGTCGACTTATTTCTTGCATCGCGCCACCGAAGACGATCACTATTTGCAAGTCGGCAAGACCGTGCTGAAAGCGTTGCAGCAGCACACGCGCGTGCCGTGCGGATACGCGTCCGTGAATGACGTCAGAACGCGCGCACACGAGGACCGAATGGACTCGTTCGTGCTCGCGGAGACATTCAAATACTTATACATGCTGTTCGGCGACGAGAAGGATTTCCCGATCAAACTGGAAGATTACGTATTGACAACTGAAGCACATTTCCTGCCGCTGTCGTTGGCAACCGTAGGAAAGAACACGTCGTATTTCACATTGAAGATCGACGATCCCGACGAAGATAAATATAGAAAAACGTGCCCGAATACAGCGTCGCTTGTGCCCGAGAAAGTACGTCAGCCGATGCGCCAGCTGCTGGGCTCGACCGCGGCGCGTCCGCCGGCGAGGCTGCGTCCACTCAATGACCCTCGCCAGATTAACGCTCTCTCCGACATGGGTATATCAGTACTGACTCTTCCCGATGGTAGAGTACAGCTGCTTTATACTATCAACACAGCTAAATCGGCGAAAGACGCCGCTGAAGGCTTGACGTTCATGCGGGAGATGGCCAAATGGAACTCGCTTAGTGATTTCGAAAACGGAGTCATACCGGCCGGTGTGAAAATCGACGATAAAATCTTTCCTGCCGGACCAGCGCACTTCGGGAAGGAAATAACAGGAAACGAACGCCACACAAACACCCTTACATTCGTGACCCCTATCGACGCGTGCACCCCTGTTGAAAACGAAGAGGAGATTTCGAACGGTTTCGGTATCGCGAAACGCGGCCATTGCACGTTCGCTCAGAAAGTGCGAAACATGCAAAAGGCCGGCGTCAAACTGGCCATCATAATAGACAACATTCCGGACTCGACACACGAGACGACCGCTCTGTTCGCGATGTCCGGCGACGGTAACGACGACATCGAAATACCCGCAGTTTTCCTGTTCTCGAAAGAAGGCGAATATTTATCGAACGCTTTAAAGAATAACCCCGAGCTCACCGTGACCGTGGGCGAACTTAAAAACTTAAAGAAGCACTACGATAATTCCTGCGATGAAGGCGGCTGCGAGGCCGTGGTCGATTCACAGAACTTACCGGCGGACAAAGAATCCTTCGATCATTTAAAAAAGGTTCTAAGCCAGTTGGTTGCTCAATTCGAATTGTCGCTCTCGAACGAAGAAGGTAATACGCAAAATTCATGCGCCGAAGAAATCGCTGAGAGCATTCACTTAGAGAAGGGGGAATTCGTTCATAACGTAGCCCGTAAAACAAGTTCTGTGAAAACCATACAGCAATCAGTTACCATCGAACCTGTGGGTCCGTCAGAAGTTGCACCGAAAGAAAGTGTTCAAGATACGGGTGAAGCAAATAAAAATAAACCCGATGAACTCTGA
Protein
MAFPVLLIMFVTIVLVKTEEETSGLRMSKAERLSLRDESRQMFYHAYHAYMENAYPADELMPLSCKGRWKGITPSRGDMDDALGNFSLTLVDSLDTLVVMGDFSEFNHAIQLVIKDVSFDQDIVVSVFETNIRMLGGLLSAHVLAETLKSDIPLLQWYNNELLTMAEDLGKRLLPAFNTSTGIPHGKINLRHGIRDLTESRETCTACAGTMILEMAALTRLTGNPIYEQKAHKSMDRLWKIRHRTSDLMGTVINIHSGDWVRKDSGVGAGIDSYYEYCLKAYILLGDEKYLARFTRHYNAIMKYISRGPVMLAVHMHRPHLQSRNFMDALLAFWPGLQVLLGDVRPAVETHEMLYQVMQRHTFIPEAFTSDFQVHWGQHPLRPEFLESTYFLHRATEDDHYLQVGKTVLKALQQHTRVPCGYASVNDVRTRAHEDRMDSFVLAETFKYLYMLFGDEKDFPIKLEDYVLTTEAHFLPLSLATVGKNTSYFTLKIDDPDEDKYRKTCPNTASLVPEKVRQPMRQLLGSTAARPPARLRPLNDPRQINALSDMGISVLTLPDGRVQLLYTINTAKSAKDAAEGLTFMREMAKWNSLSDFENGVIPAGVKIDDKIFPAGPAHFGKEITGNERHTNTLTFVTPIDACTPVENEEEISNGFGIAKRGHCTFAQKVRNMQKAGVKLAIIIDNIPDSTHETTALFAMSGDGNDDIEIPAVFLFSKEGEYLSNALKNNPELTVTVGELKNLKKHYDNSCDEGGCEAVVDSQNLPADKESFDHLKKVLSQLVAQFELSLSNEEGNTQNSCAEEIAESIHLEKGEFVHNVARKTSSVKTIQQSVTIEPVGPSEVAPKESVQDTGEANKNKPDEL

Summary

Similarity
Belongs to the glycosyl hydrolase 47 family.
Feature
chain  alpha-1,2-Mannosidase
EC Number
3.2.1.-
EMBL
BABH01007073    NWSH01001054    PCG72900.1    ODYU01003904    SOQ43244.1    AGBW02008503    + More
OWR53180.1    KQ459594    KPI96086.1    KK852591    KDR20717.1    GEZM01029605    JAV86048.1    KQ971358    EFA08227.2    GALX01004981    JAB63485.1    JRES01001249    KNC24239.1    KA649276    AFP63905.1    KA649124    AFP63753.1    GGFM01000874    MBW21625.1    GFDL01000999    JAV34046.1    GFDL01000996    JAV34049.1    GGFM01000857    MBW21608.1    ADMH02000240    ETN67271.1    GGFM01006001    MBW26752.1    GGFK01004016    MBW37337.1    GGFJ01002203    MBW51344.1    GGFK01004100    MBW37421.1    APCN01000649    GEHC01000176    JAV47469.1    AAAB01008944    EAA10107.3    GAMC01003158    JAC03398.1    CH477247    EAT46150.1    GANO01003350    JAB56521.1    GAKP01005123    GAKP01005122    GAKP01005121    GAKP01005120    JAC53831.1    GBXI01000582    JAD13710.1    GDHF01018396    GDHF01000962    JAI33918.1    JAI51352.1    GBXI01007423    GBXI01003283    JAD06869.1    JAD11009.1    GFDF01001632    JAV12452.1    GFDF01001631    JAV12453.1    ATLV01014613    KE524975    KFB39227.1    AXCN02000632    GECZ01021615    JAS48154.1    AAZO01006526    GFTR01008200    JAW08226.1    CM000157    EDW88257.1    AE014134    BT056246    AAF53255.2    ACL68693.1    GAMC01003159    JAC03397.1    CP012523    ALC38340.1    CH963857    EDW76659.2    KQ762400    OAD55906.1    CH954177    EDV58731.1    CH933807    EDW12295.1    AY119116    AAM50976.1    JXJN01022943    CM000361    CM002910    EDX04879.1    KMY90031.1    KRG03181.1    CH480831    EDW45991.1    CH916368    EDW03167.1    KQ434777    KZC04239.1    DS235854    EEB18874.1    AXCM01003320    CH902620    EDV31866.1    KPU73672.1    KRJ97674.1    CH940654    KRF77950.1    CH479189    EDW25644.1    AJWK01015752    GBHO01021120    GBHO01018689    GBHO01017808    GBHO01017806    GBRD01016872    GBRD01016871    JAG22484.1    JAG24915.1    JAG25796.1    JAG25798.1    JAG48955.1    KRF98497.1    AGB92969.1    KQS70490.1    CCAG010002366    GL447768    EFN85953.1    CH379061    EAL33202.2    KMY90032.1    ADTU01027138    KQ976415    KYM90156.1    KPU73671.1    KQ982617    KYQ53776.1    ACPB03013645    ACPB03013646    KQ980313    KYN16708.1    OUUW01000010    SPP85720.1    GL888284    EGI63252.1    GBYB01001947    JAG71714.1    GBYB01011546    JAG81313.1   
Pfam
PF01532   Glyco_hydro_47        + More
PF02225   PA
Interpro
IPR036026   Seven-hairpin_glycosidases        + More
IPR001382   Glyco_hydro_47       
IPR012341   6hp_glycosidase-like_sf       
IPR003137   PA_domain       
IPR037322   EDEM3_PA       
SUPFAM
SSF48225   SSF48225       
Gene 3D
PDB
1FMI     E-value=4.26783e-44,     Score=452

Ontologies

Topology

SignalP
Position:   1 - 18,         Likelihood:  0.949415
 
 
Length:
863
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0188799999999999
Exp number, first 60 AAs:
0.01743
Total prob of N-in:
0.00108
outside
1  -  863
 
 

Population Genetic Test Statistics

Pi
1.17223
Theta
2.957
Tajima's D
-1.862098
CLR
1.153949
CSRT
0.0176991150442478
Interpretation
Uncertain
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