Silkworm Genome Informatics Database

Gene

KWMTBOMO00310

Pre Gene Modal

BGIBMGA000686

Annotation

PREDICTED:_voltage-gated_potassium_channel_subunit_beta-1_[Bombyx_mori]

Location

Bomo_Chr1(+):9689705-9716500 View in EpiBrowser

Location in the cell

PlasmaMembrane Reliability : 4.598

CDS

ATGTCTAAAAAATTACTAATTGGCTGTGGTCACATTAAATTCATATTATTTAGCAAACTGGCGCATCAATTTTGGATATCCTACCATCCGCCAACAGGCGCAAAACACACCTCAAGTGGCGATGAAACGCCGCCTATTCCAGAAGAAGAATTGGAACAGCAGAAAATTGAACATGAACGGCAAGTTCAAAAGGAAAAGGAATGCCAAGCTAGAGAAGCAGAAGAGGTCCGTAAACTCGACATGGAACTTCTGCACCAACGGGCCATTGAAGCGGAAGAGGAACAGAAAAGAGAGATAGCTGAAGCTGTCGAAGACCTCCGAGGTATGAACACCTCTTGGTCCCATCACAGATTGTGTGACCTCCAGCGGCAAGCAGCAAGACTCCGTCACAGCCGACCCTCTATTCCTGATACCACTAATAATTACAGGTGTGTTTTGAAGAAAGCATGTAGCGCACAATTTGCGAAACCACAGTCCAGTCAAAGCATTAGCGAAGGAGATGGTATATTCATCAATCTCTCTCGCCTAGGGCCCTGCCGAGATCAATCAATAGATAGTGATTGTTGTGAGAATCCAGGTTGTACTGCTAGCACAGAAACACGCACGTGGAGAGCTTCTACTAGTGACGTAAATCCTCGCAGAAGAATAGATTTCGTGAGAGCTCCTTCATGTCCAGGAATGAGACGTCACGAGATGCATTGCAAAGGGGTTGAGGGCGGCGGCAAGGAAGGCTCGCAAATGTCCCGCAGCGAGTCCACTGTGAGCCGGTGTACACCTCACACTCCTCTCGGCCTGCCTGATAGCGCCAGCGTCGACTCCAACCCCATGCCCACTATCTATCGATGTCGTGCTCCAATTGCCTCGCTGGATTGTATGGACGATTTTAGTGCGAATTCACAACAAATGCTGGATCAAGCCGGAGAAGTAACTGTAACTCGTCACATGTCGACTTATATGGGAAACCACACAGCGATGCCGTCAGCGGTAACTCCTGGCTTGCGTTACAAGAACCTTGGAAAATCCGGTCTAAGAGTGCCTAACATCGGCTTAGGATTGTGGACAATGCTTAGTGAAGAAAGTATCGAGGATGTGGTAATGACCGCTCTGGAAAACGGCATCAACCTGTTCGACCTCTCTGAGGCTCATTGCGCTAAAGGCGAGGCGGAGCTGGGGAGGATTCTTAAAAAACGAAATGTTAGGAGGACCAGCATCATAATTACCACAAAAATATATTGGAGTACAAAGTCGGATGAAAGAGGCTTATCTCGTAAACATGTAATAGAAAGTGTTAAGGCTTCACTTGGTCGACTTCAAGTGGAATATATTGATGTTGTTCTCCTTCATAAAGTCGATCCTGTATGCCCCATGGAAGAATTGGTACGTGTCATGAATTACGTCATAAATGAAGGATGGGTTATGTATTGGGGAACGGCGCGCTGGTCACCTTCTGAGATAATGGACGCGTATACAAACTGTAGACAGTTCAATTGCATAACGCCCATAGTGGAGCAAACTGAGTACCACATGTTTTGTAGGGAAAAACCTGAATTGTACATGCCTGAACTGTACCATAAAATTGGAGTCGGTATGATGGTGTGGTCAGCCATTACGACAGGTAAAGGTTTGGGTCGCGAGGAGATAACTGGCTTGTTCGCCAAATCGCGCTTCAACAGAAAATACAGTACATTCAGCTGGTGCGAAGAGGATTTAGCGGTACCTGAAATGAGAAGTTCTGGAAGCAAAGAGCAAGTGACCGGTGAAGAACCAAGAACGTATGGCGATAAATTACGCGACCTGGCTAATTTAGCTAACTCTCTTAATTGCTCGATGAGTCAGCTTGCGGTGGCTTGGTGTTTGAAAAACGAATCTGTCAATTGCCTGCTCCTTGGAGCCACCAGTGTGGAACAGTTTAAAGAAAACATACACGCATTACAGATTGTTCCCCAGCTGACCCCGTCAGTGATGGTCGAAATAGAACGTTTGTTGGCCAACAAGCCTCAGCGTCCACCGATGGTGTCAACCCTTGCAATGCGTAACCAACAAAACAACAACACCGTCCGAGTTGACATGACGGGAGCAACAACGTCAGGCGCTGGATCTCCGAAGCCCGAGGAGGTGGCGTGCGAAGGTGAAGCCTCCACACCCGCAAAGGACACTGACTCTGCTTCCAAATCTAATAAATCAAAGGAATCAGTCAAGGATTCGAAGCCGAAATACTTTTTGAACAACGCCGGCGAAGTCATCAAACGTACAGAACAAGACGGTGTATCGACAGACGTGGTTATCTCGGTGTCGTCGATAAAAGGTAAGCAACCAGCGAGTGGTGGGAGTAAAGTGAAGAAGTCCAAAGCGGAACCGGTCCGTCCTAGAGCTCATCACTCGAACTGCATCATGACGATAGTATACTTCGACTGGCTAGACTACGTAGTATTTGGCGCTATGTTGCTCTTATCGTCCTTAATCGGCGTGTACTTCGCGTTTTTCGCGAGTAAGAAGCAAAACACTACTTCCGAATATTTGATGGGCGGGAAGACAATGGGAATGTTTCCTATTTCAATGTCGCTTATAGCCAGTTACATTTCGGGTATATCACTACTCGGCTTACCTGCTGAGATGTACACGTATGGTACACAATTGTGGACAATAGTTTTGTCCGAGTGGGCAGTATCGCTCACAATTGCAATAATTTACTTGCCAGTATTCTACAATTTACAAATCACATCAACCTATGAGTATCTAAGACTAAGGTTCAATCAAAAGGTCCGCTTGTTAGGATCAGTCATTTTTATAATCAAAATGTTGCTTTATATACCAATTGTAATTTACGTTCCTGCTCTGGCGTTCAGTCAAGTAACCGGTGTAAACCTTCACTTGATAACACCAATTGTTTGCATTGTCTGTATATTTTACACAACTCTTGGTGGAATAAAGGCAGTTGTATGGACTGATACGCTACAAACGGTTCTGATGTATTTCGGAGTCGTTTTTGTCCTAGTTTATGGAACTTGGCGACTTGGAGGCATTGGAAATGTAATAGACCTGAACAAAAAAGGAGATCGTCTTGAGTTTTTTAACATGGACCTTGATCCTACTATTCGACATACATTTTGGTCGACAGTTTTTGGAAATTATTTTAGTTGGCTAGCATCCTGTTCTGTTAACCAAGCCATGGTGCAGAGATGTCTTGCATTGTCTTCTTTAAAAAGAGCCCGAATAACCATATTTATTATGGCCGCTGGGATTTTCATCATAGTTTCGTTGTGTTGCTATACAGGATTAGTTATTTATGCAACTTTTTATAATTGCGATCCTCTAACTATTGGAGCTATAAGGAAAAGTGATCAGTTGTTACCATATTTTGTTATGACCATAACAGGATCGATTCCGGCCTTACCTGGTATATTCATGAGTGGAGTGTTCAGTGCCGCGTTAAGTTCTATGTCGACCGGCTTAAATTCAATGTGTGGAGTTATTTTCGAGGATCTAATAAGGCCAGCTTACAACAAGCCCATAACTGAGAAAAACGCCAGTTTTATCATGAAAATTATAGTCGTAGCAATTGGGGCAACTTGCGTGGCATTGGTTTTTTTAGTAGAACACATGGGTGCACTTATTCAAGCAGGAAAAAGTTTGGCTGGTATAACGGCCGGTAGTCTTTTAGGTTTATTCTCGATGGGATTATTTTTACCATGGATTAATGCTACGGGTGCACTAGCAGGTGGTATATCATCTACATTGTTGGTTGGATGGATATCACTTGGTACTCAAGCTGCTATTATGCGGGGCGAGATAATTATTTTACCAAAAGCTGTGTCTGTCGATGGCTGCGAGGGTAACTTTACGGTACCAAAGGAACCTTCAATGTCAACTGAAACGGAATTTGACAGGTCAGGAACATTCTTCCCGTACAGACTGAGCTACTTGTATTACACATTCATCGGCATGATAGTTTGCGTGTTGGTTGGAGCTCTCGTCTCGTATTTTACACGGCTAAACGATCCCACAATGATCCATCGTGACCTACTGACTCCAGTAATCCATCGTTGGCTTCCACCTCAAAGTGTCCATTGTCGCAGACCACGACTCACTCAACATGAGATTGAACTACACGCAAGAGAATTGGATGAACTGCGAGCTCATTCCCCTTATAATAAATTTAACAGTAGCCCAGAGTTCTCGCCGAGGAGAAATAACAATAATTATTAG

Protein

MSKKLLIGCGHIKFILFSKLAHQFWISYHPPTGAKHTSSGDETPPIPEEELEQQKIEHERQVQKEKECQAREAEEVRKLDMELLHQRAIEAEEEQKREIAEAVEDLRGMNTSWSHHRLCDLQRQAARLRHSRPSIPDTTNNYRCVLKKACSAQFAKPQSSQSISEGDGIFINLSRLGPCRDQSIDSDCCENPGCTASTETRTWRASTSDVNPRRRIDFVRAPSCPGMRRHEMHCKGVEGGGKEGSQMSRSESTVSRCTPHTPLGLPDSASVDSNPMPTIYRCRAPIASLDCMDDFSANSQQMLDQAGEVTVTRHMSTYMGNHTAMPSAVTPGLRYKNLGKSGLRVPNIGLGLWTMLSEESIEDVVMTALENGINLFDLSEAHCAKGEAELGRILKKRNVRRTSIIITTKIYWSTKSDERGLSRKHVIESVKASLGRLQVEYIDVVLLHKVDPVCPMEELVRVMNYVINEGWVMYWGTARWSPSEIMDAYTNCRQFNCITPIVEQTEYHMFCREKPELYMPELYHKIGVGMMVWSAITTGKGLGREEITGLFAKSRFNRKYSTFSWCEEDLAVPEMRSSGSKEQVTGEEPRTYGDKLRDLANLANSLNCSMSQLAVAWCLKNESVNCLLLGATSVEQFKENIHALQIVPQLTPSVMVEIERLLANKPQRPPMVSTLAMRNQQNNNTVRVDMTGATTSGAGSPKPEEVACEGEASTPAKDTDSASKSNKSKESVKDSKPKYFLNNAGEVIKRTEQDGVSTDVVISVSSIKGKQPASGGSKVKKSKAEPVRPRAHHSNCIMTIVYFDWLDYVVFGAMLLLSSLIGVYFAFFASKKQNTTSEYLMGGKTMGMFPISMSLIASYISGISLLGLPAEMYTYGTQLWTIVLSEWAVSLTIAIIYLPVFYNLQITSTYEYLRLRFNQKVRLLGSVIFIIKMLLYIPIVIYVPALAFSQVTGVNLHLITPIVCIVCIFYTTLGGIKAVVWTDTLQTVLMYFGVVFVLVYGTWRLGGIGNVIDLNKKGDRLEFFNMDLDPTIRHTFWSTVFGNYFSWLASCSVNQAMVQRCLALSSLKRARITIFIMAAGIFIIVSLCCYTGLVIYATFYNCDPLTIGAIRKSDQLLPYFVMTITGSIPALPGIFMSGVFSAALSSMSTGLNSMCGVIFEDLIRPAYNKPITEKNASFIMKIIVVAIGATCVALVFLVEHMGALIQAGKSLAGITAGSLLGLFSMGLFLPWINATGALAGGISSTLLVGWISLGTQAAIMRGEIIILPKAVSVDGCEGNFTVPKEPSMSTETEFDRSGTFFPYRLSYLYYTFIGMIVCVLVGALVSYFTRLNDPTMIHRDLLTPVIHRWLPPQSVHCRRPRLTQHEIELHARELDELRAHSPYNKFNSSPEFSPRRNNNNY

Uniprot

NA

ProteinModelPortal

NA

PDB

1EXB E-value=2.38944e-90, Score=852

KEGG

101739837 no KO assigned | (RefSeq) sodium-coupled monocarboxylate transporter 1-like

GO

GO:0005215 GO:0006810 GO:0016020 GO:0005249 GO:0005737 GO:0006813 GO:0009072 GO:0007169 GO:0016021 GO:0022857 GO:0055085

Length:

1401

Number of predicted TMHs:

11

Exp number of AAs in TMHs:

286.672989999999

Exp number, first 60 AAs:

0.47312

Total prob of N-in:

0.02196

outside

1 - 804

TMhelix

805 - 827

inside

828 - 846

TMhelix

847 - 869

outside

870 - 878

TMhelix

879 - 901

inside

902 - 920

TMhelix

921 - 943

outside

944 - 957

TMhelix

958 - 980

inside

981 - 986

TMhelix

987 - 1009

outside

1010 - 1073

TMhelix

1074 - 1096

inside

1097 - 1116

TMhelix

1117 - 1139

outside

1140 - 1175

TMhelix

1176 - 1198

inside

1199 - 1209

TMhelix

1210 - 1232

outside

1233 - 1306

TMhelix

1307 - 1329

inside

1330 - 1401

Pi

15.85769

Theta

16.299186

Tajima's D

0.155899

CLR

0.427633

CSRT

0.417479126043698

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics