SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00307  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA003924
Annotation
PREDICTED:_NADH_dehydrogenase_[ubiquinone]_iron-sulfur_protein_8?_mitochondrial-like_[Amyelois_transitella]
Location in the cell
Extracellular   Reliability : 2.104
 

Sequence

CDS
ATGTCTCTCGTACAGTGTATATGTACATTAACAAAAAGACGAAACGTGTTTTTTGTTATTTCTTATTTTCGTCACAAATCGGATATTCGTAATCCTGGTGAGAACCGCCGTCCCAGTTCGAATTTCCCCCCTCACCCTGCACAATCTTGTGCGCAAGGACCTCAGCGTCCCCCATTTTACTGCTGTCCGCGTACTAAATACGATGTACAATATACGTACATAAACGACCAGCCGCCATCGACGACAATGAGAGACATCTTTGATCGGGCCTCGCAAACTTTGTTTTGGACAGAAATAGTCCGAGGTTTTGCCGTAACTTTAGGACATTTGTTCAAAGAGCCAGCAACAATCAATTACCCTTTTGAGAAAGGTCCTCTTTCTCCAAGATTTAGGGGAGAACATGCCTTACGAAGGTATCCCTCCGGCGAGGAGAGATGCATTGCTTGCAAGCTTTGCGAGGCGATTTGTCCTGCTCAAGCCATAACCATTGAGGCGGAAGAAAGATGTGACGGTTCCCGGAGAGCAACAAGATACGATATAGACATGACTAAATGCATATTTTGTGGATATTGCCAGGAAGCATGTCCTGTTGACGCAATAGTCGAAGGACCAAATTTCGAGTATTGTACTGAAACCCACGAAGAGCTTCTATATAACAAAGAAAAACTGTTATCAAACGGTGATAGGTGGGAGCCAGAGATCGCAAGTAACATCAGAGATAATCATTTATATCGTTAA
Protein
MSLVQCICTLTKRRNVFFVISYFRHKSDIRNPGENRRPSSNFPPHPAQSCAQGPQRPPFYCCPRTKYDVQYTYINDQPPSTTMRDIFDRASQTLFWTEIVRGFAVTLGHLFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERCDGSRRATRYDIDMTKCIFCGYCQEACPVDAIVEGPNFEYCTETHEELLYNKEKLLSNGDRWEPEIASNIRDNHLYR

Summary

EMBL
NWSH01002956    PCG67225.1    KQ461108    KPJ09275.1    ODYU01010510    SOQ55664.1    + More
KQ459594    KPI96108.1    ODYU01001747    SOQ38370.1    KF994921    AHL83460.1    NWSH01008167    PCG62669.1    NWSH01002881    PCG67380.1    DS233057    EDS27780.1    KZ149921    PZC77743.1    CVRI01000057    CRL02455.1    GAIX01003319    JAA89241.1    GDAI01000153    JAI17450.1    APGK01052815    KB741216    ENN72467.1    BABH01037666    DQ311293    ABD36237.1    GDKW01000634    JAI55961.1    GFDL01006165    JAV28880.1    GALA01000847    JAA94005.1    ACPB03014874    FJ458415    ACL37997.1    ATLV01013258    KE524848    KFB37611.1    AP017481    BBB06730.1    AXCM01000026    GEDC01005144    JAS32154.1    AAAB01008987    EAA00878.5    APCN01000909    GBGD01002947    JAC85942.1    AXCN02000249    KK857004    PTY26677.1    GECL01003194    JAP02930.1    KK852622    KDR19989.1    JXUM01088820    KQ563727    KXJ73432.1    GFDF01001736    JAV12348.1    GFTR01003438    JAW12988.1    GAMD01003193    JAA98397.1    JRES01001243    KNC24319.1    GGFM01007186    MBW27937.1    GGFK01006631    MBW39952.1    ADMH02001371    ETN62783.1    AK401930    BAM18552.1    GDUN01001026    JAN94893.1    GFDG01001683    JAV17116.1    GANO01003304    JAB56567.1    GFDG01001680    JAV17119.1    GGFJ01009257    MBW58398.1    GFDF01001737    JAV12347.1    KA645463    AFP60092.1    GEZM01050449    GEZM01050448    JAV75586.1    UFQS01000118    UFQS01000448    UFQT01000118    UFQT01000448    SSX00003.1    SSX24441.1    AJVK01013278    CH940652    EDW59485.1    AGTO01011088    GECZ01002736    JAS67033.1    QRBI01000154    RMB98004.1    AJWK01029612    CCAG010018011    EZ424350    ADD20626.1    KB030625    ELK13253.1    AE014297    AY060840    AAF55234.1    AAL28388.1    PYGN01000201    PSN51354.1    CP012526    ALC45875.1    KB112964    ELK24248.1    CH964272    EDW85105.1    CH902617    EDV43543.1    CM000160    EDW97401.1    CH954181    EDV49066.1    CH480815    EDW41996.1    CH916369    EDV93414.1    CM000364    EDX12766.1    KQ971347    EFA05672.1    GEBQ01006800    JAT33177.1    NTJE010066974    MBV97786.1    CM000070    EAL28402.1    CH479182    EDW34129.1    MUZQ01000123    OWK57473.1    KE162024    EPQ06613.1    QUSF01000061    RLV97280.1    OUUW01000008    SPP84270.1   
Pfam
PF12838   Fer4_7
Interpro
IPR010226   NADH_quinone_OxRdtase_chainI        + More
IPR017900   4Fe4S_Fe_S_CS       
IPR017896   4Fe4S_Fe-S-bd       
PDB
5O31     E-value=2.55465e-80,     Score=758

Ontologies

Topology

Length:
245
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.03077
Exp number, first 60 AAs:
0.00015
Total prob of N-in:
0.05320
outside
1  -  245
 
 

Population Genetic Test Statistics

Pi
4.635059
Theta
4.344507
Tajima's D
-0.735949
CLR
0.05823
CSRT
0.194340282985851
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Copyright@ 2018-2023    Any Comments and suggestions mail to:zhuzl@cqu.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号