Gene

KWMTBOMO00301

Pre Gene Modal

BGIBMGA000541

Annotation

PREDICTED:_lipopolysaccharide-induced_tumor_necrosis_factor-alpha_factor_homolog_[Plutella_xylostella]

Location

Bomo_Chr1(-):9439663-9445867      View in EpiBrowser

Transcription factor

zf-LITAF-like

Location in the cell

Extracellular   Reliability : 3.549

CDS

ATGGAAAAAAATGGCAATCCTCCTCCATATGTATGGGGCCAGGCAAATGTTTTACAGCCTCCGCCTGCTGCTCCACCTAGCTACTCGCAAGCAGTGGGGGGTGTAGGGCCTTCCAGCCCTTACACACCTCAGTACCCAACAACAACAGGGCCACAAATTGTTACAACCGTAGTACCGGTTGGGCCGCATCCAACTCATATGATTTGTCCTAGTTGCCATGCCGAAATTAACACATCAACACAAACAAAACCTGGTCTCATTGCATACATAACTGGTGCAATTATATTCCTTTTAGGATGTATATGTGGGTGCTGCTTGATTCCCTGCTGTATTGACAGCTGTATGGACGTACACCATAAATGTCCTCATTGCGATACTTACCTCGGTCGCTATCGTCGATAA

Protein

MEKNGNPPPYVWGQANVLQPPPAAPPSYSQAVGGVGPSSPYTPQYPTTTGPQIVTTVVPVGPHPTHMICPSCHAEINTSTQTKPGLIAYITGAIIFLLGCICGCCLIPCCIDSCMDVHHKCPHCDTYLGRYRR

Uniprot

H9ITG1   A0A212ETH5   A0A2H1WC33   A0A194QWD0   I4DP79   I4DR29   + More
T1E7L9   A0A2M4CTG3   A0A2M3Z8R2   A0A2M4AFW9   A0A2M4C3V4   A0A182FEP3   A0A182HQI4   Q7PI09   A0A182WYY3   A0A182K4A7   A0A182N212   U5ESB5   B0WT89   A0A1Q3FCM7   A0A084WCX0   A0A182IQ94   A0A182YKQ3   A0A067RLV9   B4N6B9   A0A087ZUA4   A0A1A9VMW7   A0A1A9Z8X8   D3TLV8   A0A1A9WCY7   A0A2A3ELC4   V9IKT6   A0A0M8ZUP1   A0A182WLZ0   B3NF39   B4PCU3   Q16RP8   A0A1I8NKD4   B3M7D2   B4LFE8   A0A023EFK3   A0A182PEN8   A0A069DVW9   A0A3B0J437   Q29DK8   B4H6V0   A0A0Q9WJT0   B4KZZ1   A0A2J7RKB4   A0A0A1X3G8   A0A034WKC2   A0A0K8VA26   B4J346   A0A0V0G912   A0A182MMT2   E2BEJ5   K7J9N5   A0A026W933   E9J3H4   A0A0J7KUN1   A0A151JN35   F4WJ13   A0A195FPY1   A0A151WX34   D1FQ30   A0A1S3DI77   A0A195CTM9   A0A195BMJ0   A0A158NTR8   A0A0A9ZGQ8   A0A224XWG8   A0A1J1IEB1  

Pubmed

19121390    22118469    26354079    22651552    12364791    14747013    + More
17210077    24438588    25244985    24845553    17994087    20353571    18057021    17550304    17510324    25315136    24945155    26483478    26334808    15632085    25830018    25348373    20798317    20075255    24508170    30249741    21282665    21719571    21347285    25401762    26823975   

EMBL

BABH01007028    AGBW02012593    OWR44779.1    ODYU01007654    SOQ50620.1    KQ461108    + More
KPJ09270.1    AK403460    KQ459594    BAM19719.1    KPI96114.1    AK404912    BAM20369.1    GAMD01002917    JAA98673.1    GGFL01004435    MBW68613.1    GGFM01004077    MBW24828.1    GGFK01006360    MBW39681.1    GGFJ01010700    MBW59841.1    APCN01004623    AAAB01008948    EAA44328.1    GANO01002433    JAB57438.1    DS232081    EDS34238.1    GFDL01009704    JAV25341.1    ATLV01022896    KE525337    KFB48064.1    KK852598    KDR20553.1    CH964154    EDW79908.1    CCAG010016976    EZ422410    ADD18686.1    KZ288223    PBC31959.1    JR050476    AEY61292.1    KQ435835    KOX71510.1    CH954178    EDV50381.1    KQS43247.1    CM000159    EDW93847.1    KRK01440.1    CH477700    EAT37088.1    CH902618    EDV39830.1    CH940647    EDW69246.1    KRF84261.1    JXUM01009249    JXUM01009250    JXUM01009251    JXUM01047777    JXUM01047778    JXUM01047779    JXUM01047780    GAPW01005992    JAC07606.1    GBGD01003445    JAC85444.1    OUUW01000002    SPP76524.1    CH379070    EAL30406.2    CH479215    EDW33538.1    KRF84262.1    CH933809    EDW18003.1    KRG05894.1    NEVH01002981    PNF41277.1    GBXI01008438    JAD05854.1    GAKP01004155    JAC54797.1    GDHF01033567    GDHF01028588    GDHF01023782    GDHF01016616    GDHF01009974    GDHF01008760    JAI18747.1    JAI23726.1    JAI28532.1    JAI35698.1    JAI42340.1    JAI43554.1    CH916366    EDV96117.1    GECL01001856    JAP04268.1    AXCM01005049    GL447817    EFN85885.1    AAZX01002711    KK107348    QOIP01000010    EZA52141.1    RLU17845.1    GL768066    EFZ12573.1    LBMM01003062    KMQ94011.1    KQ978878    KYN27860.1    GL888181    EGI65783.1    KQ981382    KYN42347.1    KQ982673    KYQ52440.1    EZ419930    ACZ28285.1    KQ977279    KYN04053.1    KQ976435    KYM87095.1    ADTU01026117    GBHO01000263    GDHC01021151    JAG43341.1    JAP97477.1    GFTR01002218    JAW14208.1    CVRI01000047    CRK98106.1   

Proteomes

UP000005204    UP000007151    UP000053240    UP000053268    UP000069272    UP000075840    + More
UP000007062    UP000076407    UP000075881    UP000075884    UP000002320    UP000030765    UP000075880    UP000076408    UP000027135    UP000007798    UP000005203    UP000078200    UP000092445    UP000092444    UP000091820    UP000242457    UP000053105    UP000075920    UP000008711    UP000002282    UP000008820    UP000095301    UP000007801    UP000008792    UP000069940    UP000075885    UP000268350    UP000001819    UP000008744    UP000009192    UP000235965    UP000001070    UP000075883    UP000008237    UP000002358    UP000053097    UP000279307    UP000036403    UP000078492    UP000007755    UP000078541    UP000075809    UP000079169    UP000078542    UP000078540    UP000005205    UP000183832   

PRIDE

H9ITG1   

Pfam

PF10601   zf-LITAF-like

Interpro

IPR037519   LITAF_fam        + More
IPR006629   LITAF       

ProteinModelPortal

H9ITG1   A0A212ETH5   A0A2H1WC33   A0A194QWD0   I4DP79   I4DR29   + More
T1E7L9   A0A2M4CTG3   A0A2M3Z8R2   A0A2M4AFW9   A0A2M4C3V4   A0A182FEP3   A0A182HQI4   Q7PI09   A0A182WYY3   A0A182K4A7   A0A182N212   U5ESB5   B0WT89   A0A1Q3FCM7   A0A084WCX0   A0A182IQ94   A0A182YKQ3   A0A067RLV9   B4N6B9   A0A087ZUA4   A0A1A9VMW7   A0A1A9Z8X8   D3TLV8   A0A1A9WCY7   A0A2A3ELC4   V9IKT6   A0A0M8ZUP1   A0A182WLZ0   B3NF39   B4PCU3   Q16RP8   A0A1I8NKD4   B3M7D2   B4LFE8   A0A023EFK3   A0A182PEN8   A0A069DVW9   A0A3B0J437   Q29DK8   B4H6V0   A0A0Q9WJT0   B4KZZ1   A0A2J7RKB4   A0A0A1X3G8   A0A034WKC2   A0A0K8VA26   B4J346   A0A0V0G912   A0A182MMT2   E2BEJ5   K7J9N5   A0A026W933   E9J3H4   A0A0J7KUN1   A0A151JN35   F4WJ13   A0A195FPY1   A0A151WX34   D1FQ30   A0A1S3DI77   A0A195CTM9   A0A195BMJ0   A0A158NTR8   A0A0A9ZGQ8   A0A224XWG8   A0A1J1IEB1  

KEGG

101738899    K19363 lipopolysaccharide-induced tumor necrosis factor-alpha factor | (RefSeq) lipopolysaccharide-i

PATHWAY

04142    Lysosome - Bombyx mori (domestic silkworm)

GO

GO:0016021  

PANTHER

PTHR23292  

Length:

133

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.82184

Exp number, first 60 AAs:

0.00336

Total prob of N-in:

0.04230

outside

1  -  84

TMhelix

85  -  107

inside

108  -  133

 

 

Pi

1.413096

Theta

5.004939

Tajima's D

-2.109181

CLR

1.472201

CSRT

0.00649967501624919

Interpretation

Uncertain