SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00283
Pre Gene Modal
BGIBMGA000675
Annotation
PREDICTED:_sodium/potassium/calcium_exchanger_3-like_[Papilio_xuthus]
Location in the cell
PlasmaMembrane   Reliability : 4.95
 

Sequence

CDS
ATGGAACAAATTAAGGTTGCAAATCTAGCTGTCTTAGTGGGTTTGGTTGCTAGTTTTTATACTGTATCAGCCATCGAGGATTTCAGTTTGTCGAACGACTCTGTTTATTTACGTGTGGAGAGGAATGGGAAAATGATGTACATGACAGAAGAACTAATAAATAAATTAGAACTAGAAGATACGACTTGGCATTGGAAACCATGGCTGAGGACCAGAATTGAAGTCGTTGATAACGTTGCACATGAAGTGGTCTGCGCAACAGGAGATTCCATAGACAGTTTTCCTGATGGTATATTTACAGATGAACAACTCCGTCAAGGTGCCTTCCTTTTGTATGTCGTCTTTGGCATTTACACATTCACACTTTTGGCTATTGTTTGCAATGATTATTTCATTCCTTGTGTTGAACTTATTTGCGAAGACTTGAAGATCCCACAAAACGTAGCAGCAGCTACATTTATGTCTGTCGCGACGTCTTGTCCAGAATTCTTCGTGAACGTGATATCAACCTTTCTAACTGAATCGGATATGGGTATCGGAACTATTGTAGGATCCGCTCTTTTTAATGCTCTCGGAGTAGCTGCTATTGGAGGCCTTGCTGCTATTACACCAATAGCTATCGACATGCGGCCAGTGACAAGAGATGTGCTAATATACATGGTAAATATTAGCGTTCTTGTGGCATTTGTATGGGACGGCCAAATCGATTGGTTTGAGGCGATGGTTCTAGGAATTCTCTATATTTTGTATTTCGTTGTCATGTTTAACAGTATGAAAGCGTTTGTTCTTATTGATAAAATTTGGGCAGCCTGTTGCAAAAAGAATAATGGAGTTACCGCATCTTTGAACGATAACAATGTGTCCGTGGAAGAGGGTATTGATAACAAAGGTTTCAACGACCCCAGTCCTGTTACGAATGGAACCACTATGACGGAGAAGCCAGCTATTGATGAAAAAAATGATGTTGAAGAAACGCTAAATAAAAAAAGTTTGTTTACTTTTCCTTTTCACAAATCAATACTATACAAGATATGGTGGTTTTACATTTGGCCTTTGAAGCTGGTGCTTGGGTTGACTATACCCTCTCCAGTTACTCGAAAAAAGTTATATCCTCTCGCTTTCATAATGTGCATCGTGTGGATTGGAGTGAATTCATACTTTGTGTCTTGGAGTATGACTGTGATAGGACATACCTTCTTTATTCCTGAATCAGTTATGGGGATGACATTTTTAGCATTTGGAGGATGTCTACCAGAAGCGTGCTCGATATTTATTATGTCTAGAAGAGGCGAAGGTGGTATTGGGGTCTCAAATGCACTTGGAGCCAACTCCTTAGCGATTTTGTTTGCTTTGGGCTTACCGTGGTTGATAAGGACAGTTTCGCTGGAAATTCAAGGAGCTGAGAATACCGCAGTACTAATAAACTCAGCAGGTATCGACTTTGTCGTGGGATCTCTTCTTGTAGCTGTTGTCAGTTTATGGATCGTCCTGTTCATTGGAAAATTCACGCTGAGACGTACTGTAGGTATAGTGCTAGGGATACTTTATGTCGTTTTTATCGTTTTCGCTATTCTCGTGGAGTTGGGAATCATTTTCGATCGAAACGTTGAGTTGAGCTCGTGCTGA
Protein
MEQIKVANLAVLVGLVASFYTVSAIEDFSLSNDSVYLRVERNGKMMYMTEELINKLELEDTTWHWKPWLRTRIEVVDNVAHEVVCATGDSIDSFPDGIFTDEQLRQGAFLLYVVFGIYTFTLLAIVCNDYFIPCVELICEDLKIPQNVAAATFMSVATSCPEFFVNVISTFLTESDMGIGTIVGSALFNALGVAAIGGLAAITPIAIDMRPVTRDVLIYMVNISVLVAFVWDGQIDWFEAMVLGILYILYFVVMFNSMKAFVLIDKIWAACCKKNNGVTASLNDNNVSVEEGIDNKGFNDPSPVTNGTTMTEKPAIDEKNDVEETLNKKSLFTFPFHKSILYKIWWFYIWPLKLVLGLTIPSPVTRKKLYPLAFIMCIVWIGVNSYFVSWSMTVIGHTFFIPESVMGMTFLAFGGCLPEACSIFIMSRRGEGGIGVSNALGANSLAILFALGLPWLIRTVSLEIQGAENTAVLINSAGIDFVVGSLLVAVVSLWIVLFIGKFTLRRTVGIVLGILYVVFIVFAILVELGIIFDRNVELSSC

Summary

Similarity
Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.
Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family.
EMBL
NWSH01000732    PCG74522.1    ODYU01008830    SOQ52775.1    KQ461108    KPJ09254.1    + More
KQ459594    KPI96129.1    AGBW02012593    OWR44766.1    ATLV01000460    KE523882    KFB34753.1    AXCN02001080    CH477316    EAT43778.1    JXUM01070739    JXUM01070740    JXUM01070741    JXUM01070742    JXUM01070743    KQ562624    KXJ75461.1    AXCM01007828    APCN01001433    GFDF01007347    JAV06737.1    ADMH02000090    ETN67853.1    GALX01005060    JAB63406.1    AJVK01011474    AJVK01011475    KFB34754.1    AAAB01008823    EAA05479.5    AJVK01011476    EAT43779.1    KQ971343    EFA03343.2    ETN67852.1    KZ288460    PBC25477.1    GEHC01000815    JAV46830.1    LJIG01022574    KRT79859.1    KB632364    ERL93567.1    ERL93566.1    GEDC01015015    JAS22283.1    GDAI01000724    JAI16879.1    GAKP01008569    GAKP01008568    JAC50384.1    KK852804    KDR16220.1    DS231879    EDS42433.1    KDR16218.1    GEBQ01009123    JAT30854.1    GDHF01024865    GDHF01023184    JAI27449.1    JAI29130.1    APGK01037673    KB740948    ENN77427.1    ENN77428.1    GAMC01002975    JAC03581.1    GDHF01004911    JAI47403.1    GAMC01002974    JAC03582.1    CH940653    KRF80531.1    JRES01001143    KNC25185.1    GL452462    EFN77187.1    KQ776822    OAD52169.1    GBHO01020256    GBRD01011629    GDHC01019424    JAG23348.1    JAG54195.1    JAP99204.1    GBXI01000396    JAD13896.1    GFTR01006474    JAW09952.1    APGK01018911    KB740085    KB632303    ENN81547.1    ERL91812.1    KQ435752    KOX76187.1    CP012528    ALC49669.1    GBBI01004059    JAC14653.1    NEVH01016330    PNF25571.1    KQ414617    KOC68021.1    GECZ01024111    GECZ01014292    JAS45658.1    JAS55477.1    GECU01032286    JAS75420.1    AE014298    EYR77335.1    GECU01010473    JAS97233.1    CH902632    EDV32680.2    CH480924    EDW43676.1    UFQS01001835    UFQT01001835    SSX12512.1    SSX31955.1    CM002911    KMY91737.1    BT125892    ADV19033.1    EAA46196.2    GEBQ01031390    GEBQ01026499    GEBQ01018163    GEBQ01007137    JAT08587.1    JAT13478.1    JAT21814.1    JAT32840.1    KPU74092.1    CH933812    KRG07049.1    KMY91739.1    BT099540    ACU32624.1    EAL24595.2    KMY91736.1    KMY91740.1    KMY91738.1   
Pfam
PF01699   Na_Ca_ex        + More
PF00858   ASC
PF01510   Amidase_2
PF08449   UAA
Interpro
IPR004481   K/Na/Ca-exchanger        + More
IPR004837   NaCa_Exmemb       
IPR001873   ENaC       
IPR002502   Amidase_domain       
IPR006619   PGRP_domain_met/bac       
IPR036505   Amidase/PGRP_sf       
IPR036259   MFS_trans_sf       
IPR004836   Na_Ca_Ex       
IPR013657   UAA       
SUPFAM
SSF55846   SSF55846        + More
SSF103473   SSF103473       
Gene 3D
PDB
3V5U     E-value=1.95263e-05,     Score=116

Ontologies

Topology

SignalP
Position:   1 - 24,         Likelihood:  0.682174
 
 
Length:
541
Number of predicted TMHs:
11
Exp number of AAs in TMHs:
236.93128
Exp number, first 60 AAs:
17.77363
Total prob of N-in:
0.93900
POSSIBLE N-term signal
sequence
inside
1  -  6
TMhelix
7  -  25
outside
26  -  105
TMhelix
106  -  128
inside
129  -  148
TMhelix
149  -  171
outside
172  -  180
TMhelix
181  -  203
inside
204  -  215
TMhelix
216  -  238
outside
239  -  241
TMhelix
242  -  264
inside
265  -  368
TMhelix
369  -  390
outside
391  -  404
TMhelix
405  -  427
inside
428  -  433
TMhelix
434  -  456
outside
457  -  475
TMhelix
476  -  498
inside
499  -  509
TMhelix
510  -  532
outside
533  -  541
 
 

Population Genetic Test Statistics

Pi
6.417117
Theta
13.849783
Tajima's D
-0.641899
CLR
0.188851
CSRT
0.209589520523974
Interpretation
Uncertain
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