Gene

KWMTBOMO00280

Pre Gene Modal

BGIBMGA000548

Annotation

PREDICTED:_RUS1_family_protein_C16orf58_homolog_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr1(-):8897159-8911112      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 2.028

CDS

ATGTCTTCTCAACCAGAGGGTGAGATTATAGTCAAAGAAAAGTATGGATCTTCGAGTACCGAACGCATTTACATAAAACCACCCGAGCAAGCTATGGTTGTGGTGTATGATGAAACAAAGATCAATTACTTCAGGAACTGGTTCACGAATGTTTTTCTACCAAAAGGATATCCTGACAGTGTCAGCAGAGATTACTCAGCTTACCAGATATGGGATACAGCTCAAGCTTTCTGCAGCACCATAACAGGTACCTTAGCTACTCAAGAAGTGCTTAGAGGTGTTGGTGTTGGAGATACAACTGCTACTCCACTCGCTGCAACAGTGACATGGGTCATTAAAGACGGTTGTGGTCATCTAGGCAGGATACTCTTTGCTTTTACTCATGGAACGTGTTTGGATGCGTACAGCAAAAAATGGAGGCTTTACGCCGACATTTTAAATGACGCAGCGATGTGTATTGAAATTGCTCTTCCATACTTCAAAAACTACACTACAGTCGTACTGTGTGTGAGCACTGTTATGAAGGCAATTGTTGGAGTTTCAGGTGGTGCCACAAGAGCAGCTATGACGCAACACCATGCAGTAAGAGGCAACATGGCCGATGTTTCTGCCAAAGACTCAGCTCAAGAGACAGCTGTCAATCTTATTGCTTCTTTTACTGCTTTGTTTATTATCTCTGTTTTTGGGAGCAATGCGTTTATTTTCGTTTTCATAATGATGCTTCATATAGCGTTCAATTATTTTGCTGTAAGAGCTGTTTGTTTACGGACTATGAATGAACCTAGATTTTTGGAGTTTATCAACATATATTTAACGAAAGAAAGAATTGCAACACCGTGTGAAGTGAACAGACGCGAACCAGTCGCTTTTTATCAGATGGGCTCGCATACATTAGACCTCAAATTGTGTGGTTTCCAAATTAAAATGGGAGTGTCCATAAAGGATCTCATTAAAAAAAAATATCCAAAGGCGTCACACTTAAAGAACATCAAAGACGTCTACGAGAACCGAAATTATATCATAATCCCCAATGTTCAAGACCGGAAAATGTATGTGCTGCTTAATGAAAAGGCAATGAACGATGATATTCTGCGTGCTTACTTTCATGCTGTTCTCCTTTCCGTTATCATATGTGTAATCAACGATGTGCCCTTGCCCGTTTACCAAGCTCCGAATGAGGAGAGACCTTTCGCGCAGGTATGCCGCACAATACAAACAACTGATTGGAGCCGGGAACCTATAGAGACTCACGTTTTTAATGAATTCAAATTTGAGCCTTCTTACGACCTAATGAAATACGTTAATAGAATTGTTCAACGAGAATGGATGAGAATTAAAACGGGTATGATGCGCATAGGTTGGGATCTCAATAAACACCTGCTGATGGTAGACGAATGGCGTATTTCTTCGGTAAAACCACTTTCTCAATACGCGCCAATAGAGGGTAGAGTATCAACAAAGGACTATGTGATCAGTGAGGCGGATGCAAAACTTACGAAAGAATTGCTTATGGAATTAGAACATGGTGATGGGGTCACTTACGGCGTAGTAGAGACCAAGCCTTTGATGCATTACAAGAAAGAAGCTTCCAAACGACGAGTCCACGATATCGGCACTGAAACAGAATCACCAGAAATCGAAGAATATCGTGAACCGAATACAGAAGCGGAAGTTAAGGCTGAAGTACCGAAAGAAAACAGGAAAAAAGACTGA

Protein

MSSQPEGEIIVKEKYGSSSTERIYIKPPEQAMVVVYDETKINYFRNWFTNVFLPKGYPDSVSRDYSAYQIWDTAQAFCSTITGTLATQEVLRGVGVGDTTATPLAATVTWVIKDGCGHLGRILFAFTHGTCLDAYSKKWRLYADILNDAAMCIEIALPYFKNYTTVVLCVSTVMKAIVGVSGGATRAAMTQHHAVRGNMADVSAKDSAQETAVNLIASFTALFIISVFGSNAFIFVFIMMLHIAFNYFAVRAVCLRTMNEPRFLEFINIYLTKERIATPCEVNRREPVAFYQMGSHTLDLKLCGFQIKMGVSIKDLIKKKYPKASHLKNIKDVYENRNYIIIPNVQDRKMYVLLNEKAMNDDILRAYFHAVLLSVIICVINDVPLPVYQAPNEERPFAQVCRTIQTTDWSREPIETHVFNEFKFEPSYDLMKYVNRIVQREWMRIKTGMMRIGWDLNKHLLMVDEWRISSVKPLSQYAPIEGRVSTKDYVISEADAKLTKELLMELEHGDGVTYGVVETKPLMHYKKEASKRRVHDIGTETESPEIEEYREPNTEAEVKAEVPKENRKKD

Uniprot

A0A1E1WDA0   A0A2A4JR68   A0A2H1VNW5   A0A212ETE1   A0A0L7LKR8   A0A1B6IFU3   + More
A0A2J7PJZ6   A0A067R4N1   A0A1B6EI35   A0A154PCS9   A0A088A6C4   A0A195C320   A0A195EYP2   A0A195DIN5   E9J1X9   A0A151X3X6   E2BJZ5   F4W783   A0A1W4VMW9   A0A158NJ45   A0A026WBJ1   A0A1Y1NEA1   A0A195BJU2   A0A023F0A2   Q29LS8   B4G7G5   B4LSK5   B4KJQ7   B4P9W8   W8C9B3   B4Q8X1   D6X0W0   A0A3B0K7C2   Q9VJ63   A0A0A1WEY8   B3NLB0   B4I5J5   B3MM45   A0A0P4VME4   B4JBZ0   A0A2A3EBP0   E1ZVM4   U4UHM2   V5GPM4   A0A0L7RJL4   N6TCD4   A0A1I8MJ64   A0A224XJ25   A0A162QBV2   A0A0V0G5D6   A0A1B0GAU7   A0A0L0CFV1   A0A1A9VI68   A0A0P4XMP8   A0A1A9ZEV7   B4MZN5   A0A1A9YR54   A0A1B0BDR4   A0A1A9WN23   A0A1S3J6L0   A0A336M0X6   A0A182NNZ4   A0A0N8DVC1  

Pubmed

22118469    26227816    24845553    21282665    20798317    21719571    + More
21347285    24508170    30249741    28004739    25474469    15632085    17994087    17550304    24495485    22936249    18362917    19820115    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25830018    27129103    23537049    25315136    26108605   

EMBL

GDQN01006090    JAT84964.1    NWSH01000732    PCG74527.1    ODYU01003579    SOQ42520.1    + More
AGBW02012593    OWR44763.1    JTDY01000766    KOB75959.1    GECU01021923    JAS85783.1    NEVH01024944    PNF16648.1    KK852704    KDR18057.1    GECZ01032209    JAS37560.1    KQ434874    KZC09706.1    KQ978317    KYM95259.1    KQ981920    KYN33027.1    KQ980804    KYN12758.1    GL767674    EFZ13253.1    KQ982559    KYQ54979.1    GL448708    EFN84004.1    GL887813    EGI69967.1    ADTU01017450    KK107293    QOIP01000005    EZA53425.1    RLU22240.1    GEZM01007427    JAV95210.1    KQ976453    KYM85456.1    GBBI01003782    JAC14930.1    CH379060    EAL33967.1    CH479180    EDW29298.1    CH940649    EDW64827.1    CH933807    EDW11502.1    CM000158    EDW90309.1    GAMC01002310    GAMC01002309    JAC04247.1    CM000361    CM002910    EDX05403.1    KMY90861.1    KQ971372    EFA09542.2    OUUW01000004    SPP79408.1    AE014134    BT133447    AAF53692.2    AFH89820.1    AHN54570.1    GBXI01016835    JAC97456.1    CH954179    EDV54760.1    CH480822    EDW55651.1    CH902620    EDV30860.1    GDKW01000282    JAI56313.1    CH916368    EDW04093.1    KZ288300    PBC28884.1    GL434548    EFN74793.1    KB632328    ERL92532.1    GALX01002397    JAB66069.1    KQ414582    KOC70916.1    APGK01043270    KB741014    ENN75403.1    GFTR01006608    JAW09818.1    LRGB01000359    KZS19548.1    GECL01002918    JAP03206.1    CCAG010020051    JRES01000438    KNC31288.1    GDIP01241811    JAI81590.1    CH963920    EDW77820.1    JXJN01012634    UFQT01000272    SSX22649.1    GDIQ01088300    JAN06437.1   

Proteomes

UP000218220    UP000007151    UP000037510    UP000235965    UP000027135    UP000076502    + More
UP000005203    UP000078542    UP000078541    UP000078492    UP000075809    UP000008237    UP000007755    UP000192221    UP000005205    UP000053097    UP000279307    UP000078540    UP000001819    UP000008744    UP000008792    UP000009192    UP000002282    UP000000304    UP000007266    UP000268350    UP000000803    UP000008711    UP000001292    UP000007801    UP000001070    UP000242457    UP000000311    UP000030742    UP000053825    UP000019118    UP000095301    UP000076858    UP000092444    UP000037069    UP000078200    UP000092445    UP000007798    UP000092443    UP000092460    UP000091820    UP000085678    UP000075884   

PRIDE

Q9VJ63   

Pfam

PF04884   DUF647        + More
PF05916   Sld5

Interpro

IPR006968   RUS_fam        + More
IPR036224   GINS_bundle-like_dom_sf       
IPR021151   GINS_A       

SUPFAM

SSF158573   SSF158573       

ProteinModelPortal

A0A1E1WDA0   A0A2A4JR68   A0A2H1VNW5   A0A212ETE1   A0A0L7LKR8   A0A1B6IFU3   + More
A0A2J7PJZ6   A0A067R4N1   A0A1B6EI35   A0A154PCS9   A0A088A6C4   A0A195C320   A0A195EYP2   A0A195DIN5   E9J1X9   A0A151X3X6   E2BJZ5   F4W783   A0A1W4VMW9   A0A158NJ45   A0A026WBJ1   A0A1Y1NEA1   A0A195BJU2   A0A023F0A2   Q29LS8   B4G7G5   B4LSK5   B4KJQ7   B4P9W8   W8C9B3   B4Q8X1   D6X0W0   A0A3B0K7C2   Q9VJ63   A0A0A1WEY8   B3NLB0   B4I5J5   B3MM45   A0A0P4VME4   B4JBZ0   A0A2A3EBP0   E1ZVM4   U4UHM2   V5GPM4   A0A0L7RJL4   N6TCD4   A0A1I8MJ64   A0A224XJ25   A0A162QBV2   A0A0V0G5D6   A0A1B0GAU7   A0A0L0CFV1   A0A1A9VI68   A0A0P4XMP8   A0A1A9ZEV7   B4MZN5   A0A1A9YR54   A0A1B0BDR4   A0A1A9WN23   A0A1S3J6L0   A0A336M0X6   A0A182NNZ4   A0A0N8DVC1  

KEGG

101737871    no KO assigned | (RefSeq) RUS1 family protein C16orf58 homolog

GO

GO:0016021   GO:0006260   GO:0005634  

PANTHER

PTHR12770  

Subcellular location

Nucleus  

Length:

570

Number of predicted TMHs:

2

Exp number of AAs in TMHs:

61.92428

Exp number, first 60 AAs:

0.00059

Total prob of N-in:

0.26834

outside

1  -  226

TMhelix

227  -  249

inside

250  -  365

TMhelix

366  -  388

outside

389  -  570

 

 

Pi

5.61681

Theta

5.030776

Tajima's D

-1.374387

CLR

0.094857

CSRT

0.0765961701914904

Interpretation

Uncertain