Silkworm Genome Informatics Database

Gene

KWMTBOMO00267

Annotation

PREDICTED:_peptidoglycan-recognition_protein_SB1-like_[Papilio_polytes]

Location

Bomo_Chr1(-):8672316-8678715 View in EpiBrowser

Location in the cell

PlasmaMembrane Reliability : 3.987

CDS

ATGGTAGAGATACAACTGCATTCGTTCGCGAGTAATATTCATAAGTTGTGTCCGTTCATTCATCACGAGTTCAGGCAGAATAATTCACACAGGGCCGATAGTTCAGACATAAGACAATCTGAAGAGACTCCACTCTTGCACACATTCCCTCGAGAGACGTCGCCTGAGGAAAACAACTGGACTAGCTTAACCGTGAGCTTGCTGCTGGTGATACTAATATCTGGTATTATAATAGGCGTTTATCTTCTGATAATACAAAGCGATTCTGAGAATGTCCTGCCTCCGGTCGAAATGCCACTGCAATTCGTCAGCAGACTTCAATGGGATACCTTACGCAAACGACCGGTCCTGTCGTCGTCTTCTTTCAGAGCGAAATCTGTAGTGGCAGTTCAAACCGATTCAATACTCTGCTGGGCCACTGAGTCCTGTTTTGATTTGCTACAACATATGCAGGAAAACGACACAAGCAACAATACGATGGCCTATAATTTTCTTATATCGTCGAACGGTCAAACCTATGAATCGCTTGGGTGGCACGTTCCATCACCTATGTTCCCCAAGTATTCTAACTCAAGCCTAGTCTTCGGTTTCATTGGGAATTTCACAGATATGGCACCATCGAGCTATCAAATCGACGGAGCAGAAAAGCTTTTAGCCGTTTCGGTGAGCCAGCAATACTTAGAACCAAACTATGTACTTGTTGGAAGAAAAACGAAAGAGAGACCCGTTTATTTATTTTCAATCCTGAAAAAATTTCCGCAATGGGACGAGGATAATTCTGATTGA

Protein

MVEIQLHSFASNIHKLCPFIHHEFRQNNSHRADSSDIRQSEETPLLHTFPRETSPEENNWTSLTVSLLLVILISGIIIGVYLLIIQSDSENVLPPVEMPLQFVSRLQWDTLRKRPVLSSSSFRAKSVVAVQTDSILCWATESCFDLLQHMQENDTSNNTMAYNFLISSNGQTYESLGWHVPSPMFPKYSNSSLVFGFIGNFTDMAPSSYQIDGAEKLLAVSVSQQYLEPNYVLVGRKTKERPVYLFSILKKFPQWDEDNSD

Uniprot

A0A2W1BRS5 A0A2A4J9Z9 A0A2A4JBI8 A0A1E1WEY6 A0A2H1V4V7 A0A194QUN3 + More
A0A194PTR4 A0A212EZC6

Pubmed

28756777 26354079 22118469

EMBL

KZ149961 PZC76315.1 NWSH01002204 PCG68915.1 PCG68914.1 GDQN01005538 + More
GDQN01000373 JAT85516.1 JAT90681.1 ODYU01000655 SOQ35806.1 KQ461108 KPJ09238.1 KQ459594 KPI96144.1 AGBW02011334 OWR46807.1

Proteomes

UP000218220 UP000053240 UP000053268 UP000007151

Pfam

PF01510 Amidase_2

Interpro

IPR006619   PGRP_domain_met/bac        + More
IPR002502   Amidase_domain
IPR015510   PGRP
IPR036505   Amidase/PGRP_sf

SUPFAM

SSF55846 SSF55846

Gene 3D

3.40.80.10

CDD

cd06583 PGRP

ProteinModelPortal

A0A2W1BRS5 A0A2A4J9Z9 A0A2A4JBI8 A0A1E1WEY6 A0A2H1V4V7 A0A194QUN3 + More
A0A194PTR4 A0A212EZC6

PDB

2EAX E-value=1.87147e-13, Score=182

KEGG

101736487 K01446 peptidoglycan recognition protein | (RefSeq) peptidoglycan-recognition protein SB2-like

GO

GO:0009253 GO:0008745 GO:0008270 GO:0016021 GO:0006096 GO:0005506 GO:0009072 GO:0006810 GO:0007169

PANTHER

PTHR11022

Length:

261

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.48516

Exp number, first 60 AAs:

0.06562

Total prob of N-in:

0.61429

inside

1 - 62

TMhelix

63 - 85

outside

86 - 261

Pi

21.997953

Theta

21.284093

Tajima's D

0.102246

CLR

0

CSRT

0.403529823508825

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics