Silkworm Genome Informatics Database

Gene

KWMTBOMO00246 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA000657

Annotation

juvenile_hormone_resistence_protein_II_[Bombyx_mori]

Location

Bomo_Chr1(+):8406886-8423403 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.446

CDS

ATGGTGCATACGAATCCCGATTTCAACCCGGAGTTCACCGACGCCGTGCTGAAATTATTCAACGGATTTTTGATTACTACTACATATAGAGGCATAATTGTCGTGGTGTCAAAAAATGTACACCAATACTTGGGTTTCCCCGAGCTTGACCTCCTGGGGCAGAACCTGGTGAATCTGACTCATCCGAGAGATCGCCAAATGCTGCTTGAGAAGCTGAAGCCAAGAAGCCAAGTTTTAGGACCAAACGGAGAGCTGTTGATTCCAAATGAGCCCGATGGTGTTTACAAAGTTGTTGAGGGGTTGCGTCGAGAAAAAAGAAGCTTCACCATCAGGTTGAAGAAGCAGGGACCACGTTCCGAACCAACGCAGTATGTAATGTGCCACATCGAAGGCTCATTCAGGAAGGCGGACGGTGCCAACCACACACTTAGCCGCTGTTGTCAGGTGGTGCGTCGCTCTCGTACACGTGGCGAAGCTCCTGAATGCAGCGGAAACGATATAGTGTTCATTGGCGTCGTGCGTCCGTCAGTCGAAACCTTCCATTCAGAGAGCCGAATGGAATCGTTTTGTATGGAGTACCGCACTCGCCACTCTGTCGATGGACAGATCGTCCAATGCGAACAGCGTATCTCGTTGGTCACCGGCTATATGACCCACGAAGTCAAGGGCGTTAATGCCATGAATTTTATGCATCGCGATGACGTGCGCTGGGTCGCCACAGCTCTACGAGATATGTATGATCAACATCGATTGTTCGGAGAGTCCTGTTACCGTCTGATCACCAAAAATGGTCAATTCATTTACATGAGGACACGTGGCCATCTTGATATTGAAAAAGACTCTAAGGCTGTAACCACTTTTGTTTGCACAAACACCGTTATTGGAGAAGAGGAGGGAAAGCGTTTGATCAAAATGATGAAAAAAAGGATCGCCTTATTGACAAAAACAAATGACAAACTCCTCAAATATGATGAGGGTACTTCAAATCAATTGGTTCCAGTCGAAGATCCCAAGCAGCTTGTGAACGTCGTGTTACATATGGTCACAGATTTGCCAACATCAAAGCCAGGCATAGCTTTGAAACAAAATAATCCTGCTTCTCCATCTCATAACTTGAGCATAATTCCACCAAAGAAAGAGCGTATTGTAAGTGGGGTGGAAAAAATTTACACCATTTTCAAAAACATGATGGGTAATACCCCTCCAGTACAGCAGACGCCAACTTGGACAGTGGATGAACCACAAGATGCTATTTTGGATATTAATATGATAAACCAGCCATTATTTGCGACTGAGAATTCTTCTCGTATCCAAGAAATTGATGAATCGAACACGTTTGAAATTTTCGATATGCCGTCGACATCGACCGCTTTGTGCCAAGTGGAACCAAACTACTTTGAAGAAGGGCAGCTAAATGTCACATCTAACAATTTAATGTTTTCCGAAGCAGTGGCCGTCGAACAATATAATCCCGAATTTGGATTGACGGCTACTTCACCTGACGTAACATATCATGATTACTTAAATGTACAGGAAAATGAGATTACATTGGATGACTTCATATTTCCTGAATTAATTGACGAGCCACAGGGAATACAGAGTCCTACTCAAATTAAATACCATTTGGTAATCGATTCTGAGCAAGATTTAAACGAAGCTTTCCAACAAGCCAACAAAAATTCTGCTGCGAACCTGGAATCTGACCTCAACAAAATTGGCATGAAGCGTCCAAATAACTTTTCTGAAGTAGCTTCAAGTAACAAGAAAATATCTAACCCCAATATCGTTGCTGAGAACGACTTCTCCAGTGAATTTGCGTGTCTCGAAAGTTTCTTGGACGATGTCACTCTGAACACTCAGATTGAAACGGCCATTAAATCCTTGGAGCAAACCATCGATCCTAGTTTCCCGGAATTGTTGATTTCATCCGAGGTTCAAGAAATTCTTGGCAAAATAGAAGAGGAACAGAAAAACCAACAACAATAA

Protein

MVHTNPDFNPEFTDAVLKLFNGFLITTTYRGIIVVVSKNVHQYLGFPELDLLGQNLVNLTHPRDRQMLLEKLKPRSQVLGPNGELLIPNEPDGVYKVVEGLRREKRSFTIRLKKQGPRSEPTQYVMCHIEGSFRKADGANHTLSRCCQVVRRSRTRGEAPECSGNDIVFIGVVRPSVETFHSESRMESFCMEYRTRHSVDGQIVQCEQRISLVTGYMTHEVKGVNAMNFMHRDDVRWVATALRDMYDQHRLFGESCYRLITKNGQFIYMRTRGHLDIEKDSKAVTTFVCTNTVIGEEEGKRLIKMMKKRIALLTKTNDKLLKYDEGTSNQLVPVEDPKQLVNVVLHMVTDLPTSKPGIALKQNNPASPSHNLSIIPPKKERIVSGVEKIYTIFKNMMGNTPPVQQTPTWTVDEPQDAILDINMINQPLFATENSSRIQEIDESNTFEIFDMPSTSTALCQVEPNYFEEGQLNVTSNNLMFSEAVAVEQYNPEFGLTATSPDVTYHDYLNVQENEITLDDFIFPELIDEPQGIQSPTQIKYHLVIDSEQDLNEAFQQANKNSAANLESDLNKIGMKRPNNFSEVASSNKKISNPNIVAENDFSSEFACLESFLDDVTLNTQIETAIKSLEQTIDPSFPELLISSEVQEILGKIEEEQKNQQQ

Uniprot

H9ITS7 B0LL82 D4Q9H9

Pubmed

19121390 23300902 22753472

EMBL

BABH01006931 EU249372 ABY76059.1 AB359912 BAJ05086.1

Proteomes

UP000005204

PRIDE

H9ITS7 B0LL82 D4Q9H9

Pfam

PF00010 HLH

Interpro

IPR000014   PAS        + More
IPR035965   PAS-like_dom_sf
IPR011598   bHLH_dom
IPR001067   Nuc_translocat
IPR036638   HLH_DNA-bd_sf

SUPFAM

SSF55785 SSF55785 + More
SSF47459 SSF47459

Gene 3D

4.10.280.10

CDD

cd00130 PAS
cd00083 HLH

ProteinModelPortal

H9ITS7 B0LL82 D4Q9H9

PDB

4F3L E-value=2.79418e-19, Score=236

KEGG

100141425 no KO assigned | (RefSeq) BmMET2; juvenile hormone resistence protein II

GO

GO:0005737 GO:0005634 GO:0046983 GO:0005667 GO:0003700

Subcellular location

Nucleus

Length:

661

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.972139999999998

Exp number, first 60 AAs:

0.97139

Total prob of N-in:

0.04591

outside

1 - 661

Pi

24.753134

Theta

20.969597

Tajima's D

0.0417

CLR

0.131549

CSRT

0.384480775961202

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics