SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00230
Pre Gene Modal
BGIBMGA000568
Annotation
GABA-gated_chloride_channel_[Bombyx_mori]
Location in the cell
PlasmaMembrane   Reliability : 4.063
 

Sequence

CDS
ATGTACGTGCTCTCCATCAGCTCTCTGTCTGAAGTGAAAATGGACTTCACGTTGGACTTTTACTTCAGACAGTTTTGGACCGATCCGCGATTGGCGTACAAAAAAAGGACAGGAGTTGAAACGTTGTCGGTTGGCTCCGAATTCATAAAGAACATATGGGTGCCCGACACATTCTTTGTGAACGAAAAACAGTCTTATTTCCATATAGCTACGACAAGTAACGAATTTATACGTATACATTACTCTGGCTCAATAACTAGAAGTATAAGATTGACTATTACTGCGTCTTGTCCAATGAATCTGCAATACTTTCCAATGGATCGTCAATTATGCCATATAGAAATAGAAAGTTTCGGCTACACCATGCGGGACATCCGATACAAATGGAACGAGGGGCCCAACTCTGTGGGTGTTTCCAGCGAGGTGTCGCTACCGCAGTTCAAAGTCCTGGGTCACCGCCAACGAGCTATGGAGATCTCCCTCACAACAGGAAATTATTCAAGATTAGCATGTGAAATACAATTTGTGCGCTCTATGGGCTACTATCTAATCCAAATTTACATTCCATCGGGACTCATCGTGATCATATCCTGGGTGTCGTTTTGGTTGAACCGTAACGCCACTCCGGCTCGAGTGGCTCTCGGCGTCACCACTGTGCTGACAATGACAACGCTTATGTCATCGACGAACGCTGCCCTACCAAAAATTTCATACGTAAAATCAATTGACGTCTACTTAGGAACGTGTTTCGTAATGGTCTTCGCGAGTCTTTTAGAATACGCAACTGTCGGATATATGGCTAAGAGAATACAAATGAGGAAACAGCGATTTGTGGCTATACAGAAAATTGCCTCGGAGAAGAAACTTCCAGAATGCCCTCCAGTCGGCGATCCACACACTTTATCGAAGATGAATACTTTAAGCAGATGTCCTCCTAGCAGACCATCTGAAGTCCGTTTTAAAGTTCACGATCCGAAGGCGCATTCCAAAGGCGGTACTTTGGAGAACACCATTAACGGAGGAAGAGGGGGAGCAGACGAAGAAAATCCAGGTCCCCATCCAATACATCCAGGAAAGGATATTAGCAAACTACTGGGAATGACGCCATCAGACATCGACAAATATTCCCGTATAGTTTTCCCGGTTTGCTTCGTTTGTTTTAATCTTATGTATTGGATTATATACCTTCATGTTTCGGACGTCGTGGCTAACGATCTGGTTCTTCTGGAAGAAGATAAATAG
Protein
MYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYKKRTGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHYSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSSEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKQRFVAIQKIASEKKLPECPPVGDPHTLSKMNTLSRCPPSRPSEVRFKVHDPKAHSKGGTLENTINGGRGGADEENPGPHPIHPGKDISKLLGMTPSDIDKYSRIVFPVCFVCFNLMYWIIYLHVSDVVANDLVLLEEDK

Summary

Similarity
Belongs to the ligand-gated ion channel (TC 1.A.9) family.
EMBL
AB847423    BAN92442.1    EF521821    ABP96889.1    GQ890661    ADM88006.1    + More
AB278155    BAT57340.1    GQ890669    ADM88014.1    LC171477    BAW87784.1    KZ149977    PZC75884.1    GQ890663    ADM88008.1    KX856969    ASY91961.1    AF006192    AAB62572.1    NWSH01001075    PCG72737.1    KX856966    ASY91958.1    GQ890662    ADM88007.1    FJ665608    ACN52598.1    FJ668709    ACN53550.1    FJ665607    ACN52597.1    EF156251    ABL86443.1    EF368369    ABN13426.1    ACN53549.1    EU273945    ABX47168.1    AGBW02013810    OWR42777.1    GQ890668    ADM88013.1    GQ890666    ADM88011.1    ODYU01002299    SOQ39612.1    KF881791    AHE41088.1    KF881790    AHE41087.1    AJ224513    CAB41615.1    JN794059    AER59668.1    JN792582    AER59667.1    HM566200    KX856970    ADK74004.1    ASY91962.1    EF535530    ABQ45398.1    AF006189    AAB62563.1    BABH01040612    KC841916    AGK30293.1    AB617631    BAL63029.1    GQ890667    ADM88012.1    GQ890665    ADM88010.1    KU201323    ANC68178.1    NEVH01012562    PNF30265.1    LC171476    BAW87783.1    LC171474    BAW87781.1    KU201322    ANC68177.1    ODYU01009008    SOQ53088.1    DQ667182    ABG75734.1    NWSH01001799    PCG70103.1    EF545117    KQ972204    ABU63595.1    KYB24596.1    PNF30267.1    LC171472    BAW87779.1    KJ485710    AJE68941.1    KU201321    ANC68176.1    EF545118    ABU63596.1    KYB24597.1    SOQ39604.1    PNF30264.1    PNF30268.1    APCN01000072    APCN01000073    AAAB01008960    EDO63781.1    GEDC01012391    JAS24907.1    PCG70102.1    CH940647    EDW68497.2    OWR42773.1    MG190358    AUC64171.1    KX431144    APA16887.1    PNF30266.1    GQ890664    ADM88009.1    KRF83882.1    AXCN02000404    KRF83883.1    GBHO01032740    JAG10864.1    AB697765    BAM66322.1    ADTU01014314    ADTU01014315    ADTU01014316    ADTU01014317    ADTU01014318    ADTU01014319    ADTU01014320    ADTU01014321    LC171473    BAW87780.1    CP012525    ALC43610.1    GBHO01014122    JAG29482.1    KY072798    ARO86294.1    JF460792    AEB60992.1    GBRD01002284    JAG63537.1    GBRD01009258    JAG56563.1    KJ174465    AHW29555.1    KRF83878.1    KRF83879.1    KRF83880.1    KRF83881.1    KJ174466    AHW29556.1    FJ665610    ACN52600.1   
Pfam
PF02932   Neur_chan_memb        + More
PF02931   Neur_chan_LBD
Interpro
IPR036719   Neuro-gated_channel_TM_sf        + More
IPR002289   GABAAb_rcpt       
IPR036734   Neur_chan_lig-bd_sf       
IPR006029   Neurotrans-gated_channel_TM       
IPR006028   GABAA/Glycine_rcpt       
IPR006202   Neur_chan_lig-bd       
IPR006201   Neur_channel       
IPR018000   Neurotransmitter_ion_chnl_CS       
SUPFAM
SSF63712   SSF63712        + More
SSF90112   SSF90112       
Gene 3D
PDB
6I53     E-value=1.01575e-70,     Score=678

Ontologies

Topology

Length:
413
Number of predicted TMHs:
4
Exp number of AAs in TMHs:
87.64168
Exp number, first 60 AAs:
0.00114
Total prob of N-in:
0.00364
outside
1  -  180
TMhelix
181  -  203
inside
204  -  211
TMhelix
212  -  234
outside
235  -  243
TMhelix
244  -  266
inside
267  -  376
TMhelix
377  -  399
outside
400  -  413
 
 

Population Genetic Test Statistics

Pi
29.193941
Theta
24.343145
Tajima's D
-0.640341
CLR
0.035439
CSRT
0.207839608019599
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Copyright@ 2018-2023    Any Comments and suggestions mail to:zhuzl@cqu.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号