Gene

KWMTBOMO00221

Pre Gene Modal

BGIBMGA000639

Annotation

PREDICTED:_homeobox_protein_caupolican_[Bombyx_mori]

Location

Bomo_Chr1(+):7262228-7326344      View in EpiBrowser

Transcription factor

Homeobox

Location in the cell

Nuclear   Reliability : 3.999

CDS

ATGAGCGCGGGAGCGGGTAGCGCGGCTCGGCCTAGCTCGCCCGCCGCCGCGCCTCGCTGCTGTGACACCGGACGCCCCATATTCCACGACCCGATCACGGGCCAGACGGTCTGCTCCTGTCAATACGAGTTCCTAAACTACCAGAGGCTAGCTTCGGGCATGCCTATGTCTGTGTACAGTGCCCCCTACTCCGACGCGGCTGCTGCAACGGCAGCCGGCATGGCAGCATACTTTCCTGCCCTAGCTGCCGACCAACCTCCATTTTACACAAACGCGGCAGCGGGAATCGAGCTGAAAGAAAATTTAGCAGCCAGCGCAGCGAGCTGGCCTTATCCTGCAGTCTATCATCCTTACGATGCGGCTTTTGCTGGATATCCCTTCAACGGGTACGGGATGGACCTAAACGGAGCGCGAAGGAAAAATGCTACGCGAGAAACGACTAGCACGCTCAAAGCATGGCTCAACGAGCACAAGAAGAATCCTTATCCAACGAAAGGGGAGAAGATTATGCTTGCTATCATTACCAAAATGACGCTTACGCAAGTTTCTACTTGGTTTGCGAATGCGCGTCGTCGACTGAAGAAAGAGAACAAGATGACGTGGGAACCAAGAAACAGGGTTGACGATGATGACAATAACAATGACGACGATGACCACAAAAGTAATGACGGCAAAGACGCTTTAGATGGTAAGGACTCCGGCACAGGTTCGAGTGAAGACGGAGACAGACCTCAGCAGAGGTTGGATCTTTTGGGACAACGAACAGAATCAGAGTGGTCAGAATCACGAGCGGACAGCGGACCTGAGTCACCTGAGCCGTATGAGAGACCGATACATCCGGCGTACCAACATTTACCTTCCCGCGCACCACCTGGCAGCACCCCTGCATCGGCCAAGCCCAGAATATGGTCGCTAGCGGATATGGCGAGCAAAGACGGTGAGTCGCCTGCGCCTCCGTCATCGGCTTCCGCTTTCTACCAGTCAGCTGCAGCGGCTGCAGCGGCTGCGCGATTAGCACATCCTTACGGAAGGCCCGAACTATATCGAGGGCTATATCCTCCAACTCACCCCGCTGACGTGGCTCTGTTGGAATATTCTCGGTCTTTAGCTCTCGCTAATCCAGCACCTGCACCGCCGGCTCCTTCACCGTCGTCTTCATCGACATCGTCAGTGGCCGAGCCGCCACCACCGCCCCGTGCCTGA

Protein

MSAGAGSAARPSSPAAAPRCCDTGRPIFHDPITGQTVCSCQYEFLNYQRLASGMPMSVYSAPYSDAAAATAAGMAAYFPALAADQPPFYTNAAAGIELKENLAASAASWPYPAVYHPYDAAFAGYPFNGYGMDLNGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWEPRNRVDDDDNNNDDDDHKSNDGKDALDGKDSGTGSSEDGDRPQQRLDLLGQRTESEWSESRADSGPESPEPYERPIHPAYQHLPSRAPPGSTPASAKPRIWSLADMASKDGESPAPPSSASAFYQSAAAAAAAARLAHPYGRPELYRGLYPPTHPADVALLEYSRSLALANPAPAPPAPSPSSSSTSSVAEPPPPPRA

Uniprot

A0A2W1BNZ6   A0A2A4JJ46   A0A2A4JKQ6   A0A139WL71   U4UQ21   N6U4R4   + More
A0A1Y1LTB9   A0A1B0EWI7   A0A1S4FGP2   Q171W7   B0VZ28   A0A182GVJ9   A0A2M4CRT0   A0A2M4CRZ8   A0A154P8Q5   A0A084WDT6   A0A151J012   A0A1W4WZT5   A0A1W4WYS6   A0A1W4WP17   A0A195FNQ3   F4WMP6   A0A158N8X2   A0A1Y9H1X5   A0A2C9H895   A0A3F2Z0C0   Q7Q7U9   A0A2C9GPV8   A0A195B4P8   A0A1B6E4I8   A0A088AU13   A0A0C9RPT6   A0A0C9QIC1   A0A0L7QZW5   A0A067R8U0   A0A3L8DDD6   A0A2S2QBZ6   A0A026W5Y9   A0A3B0KMM3   K7IW51   A0A1W4UH91   B4NDK3   A0A1J1IJB5   A0A1B6GLA3   B4GRH6   A0A1B6M728   Q2M0K9   B3M9P9   B4HG50   B4QRQ3   O01667   Q9VU01   A0A0J9RVI5   B4PGT5   M9PI45   B3NCT4   A0A0M4EZX6   A0A1S4EBL4   B4IWZ1   B4LGH0   A0A0A9W3F2   W8B7E1   B4L0P7   A0A0A1WF40   A0A0K8UJ47   T1GN44   A0A1I8M686   A0A1I8M684   A0A336MWQ2   A0A336M4F8   A0A1B0FA50   A0A0L0C998   A0A0A9VZE3   A0A034VZD6   A0A2R7VVJ0  

Pubmed

28756777    18362917    19820115    23537049    28004739    17510324    + More
26483478    24438588    21719571    21347285    12364791    14747013    17210077    24845553    30249741    24508170    20075255    17994087    15632085    9136934    9477320    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    22936249    17550304    25401762    24495485    25830018    25315136    26108605    25348373   

EMBL

KZ149973    PZC75991.1    NWSH01001244    PCG71991.1    PCG71990.1    KQ971321    + More
KYB28759.1    KB632398    ERL94608.1    APGK01042656    APGK01042657    APGK01042658    APGK01042659    APGK01042660    KB741007    ENN75616.1    GEZM01052924    JAV74237.1    AJWK01005725    AJWK01005726    AJWK01005727    AJWK01005728    CH477444    EAT40788.1    DS231813    EDS25750.1    JXUM01018967    KQ560529    KXJ81971.1    GGFL01003868    MBW68046.1    GGFL01003867    MBW68045.1    KQ434846    KZC08299.1    ATLV01023063    KE525340    KFB48380.1    KQ980658    KYN14747.1    KQ981382    KYN42180.1    GL888218    EGI64523.1    ADTU01008893    ADTU01008894    ADTU01008895    AAAB01008948    EAA10468.4    APCN01004682    KQ976618    KYM79242.1    GEDC01004474    JAS32824.1    GBYB01010495    JAG80262.1    GBYB01014503    JAG84270.1    KQ414676    KOC64096.1    KK852664    KDR19021.1    QOIP01000010    RLU18163.1    GGMS01006076    MBY75279.1    KK107455    EZA50454.1    OUUW01000009    SPP85058.1    CH964239    EDW81825.2    CVRI01000054    CRL00333.1    GECZ01006589    JAS63180.1    CH479188    EDW40361.1    GEBQ01008245    JAT31732.1    CH379069    EAL30921.2    CH902618    EDV39055.2    CH480815    EDW41296.1    CM000363    EDX10267.1    U95021    AF004710    AAB53640.1    AAC23943.1    AE014296    AAF49894.1    AAN11850.1    CM002912    KMY99269.1    CM000159    EDW94324.2    AGB94471.1    CH954178    EDV51590.2    CP012525    ALC44350.1    CH916366    EDV97392.1    CH940647    EDW70499.2    GBHO01042626    JAG00978.1    GAMC01013607    JAB92948.1    CH933809    EDW18124.2    GBXI01017197    JAC97094.1    GDHF01025728    JAI26586.1    CAQQ02395044    UFQT01003166    SSX34676.1    UFQT01000549    SSX25162.1    CCAG010009438    JRES01000715    KNC28998.1    GBHO01042625    JAG00979.1    GAKP01011742    JAC47210.1    KK854083    PTY10911.1   

Proteomes

UP000218220    UP000007266    UP000030742    UP000019118    UP000092461    UP000008820    + More
UP000002320    UP000069940    UP000249989    UP000076502    UP000030765    UP000078492    UP000192223    UP000078541    UP000007755    UP000005205    UP000075884    UP000076407    UP000075903    UP000007062    UP000075840    UP000078540    UP000005203    UP000053825    UP000027135    UP000279307    UP000053097    UP000268350    UP000002358    UP000192221    UP000007798    UP000183832    UP000008744    UP000001819    UP000007801    UP000001292    UP000000304    UP000000803    UP000002282    UP000008711    UP000092553    UP000079169    UP000001070    UP000008792    UP000009192    UP000015102    UP000095301    UP000092444    UP000037069   

PRIDE

O01667   

Pfam

PF05920   Homeobox_KN

Interpro

IPR009057   Homeobox-like_sf        + More
IPR003893   Iroquois_homeo       
IPR001356   Homeobox_dom       
IPR008422   Homeobox_KN_domain       
IPR017970   Homeobox_CS       

SUPFAM

SSF46689   SSF46689       

CDD

cd00086  homeodomain

ProteinModelPortal

A0A2W1BNZ6   A0A2A4JJ46   A0A2A4JKQ6   A0A139WL71   U4UQ21   N6U4R4   + More
A0A1Y1LTB9   A0A1B0EWI7   A0A1S4FGP2   Q171W7   B0VZ28   A0A182GVJ9   A0A2M4CRT0   A0A2M4CRZ8   A0A154P8Q5   A0A084WDT6   A0A151J012   A0A1W4WZT5   A0A1W4WYS6   A0A1W4WP17   A0A195FNQ3   F4WMP6   A0A158N8X2   A0A1Y9H1X5   A0A2C9H895   A0A3F2Z0C0   Q7Q7U9   A0A2C9GPV8   A0A195B4P8   A0A1B6E4I8   A0A088AU13   A0A0C9RPT6   A0A0C9QIC1   A0A0L7QZW5   A0A067R8U0   A0A3L8DDD6   A0A2S2QBZ6   A0A026W5Y9   A0A3B0KMM3   K7IW51   A0A1W4UH91   B4NDK3   A0A1J1IJB5   A0A1B6GLA3   B4GRH6   A0A1B6M728   Q2M0K9   B3M9P9   B4HG50   B4QRQ3   O01667   Q9VU01   A0A0J9RVI5   B4PGT5   M9PI45   B3NCT4   A0A0M4EZX6   A0A1S4EBL4   B4IWZ1   B4LGH0   A0A0A9W3F2   W8B7E1   B4L0P7   A0A0A1WF40   A0A0K8UJ47   T1GN44   A0A1I8M686   A0A1I8M684   A0A336MWQ2   A0A336M4F8   A0A1B0FA50   A0A0L0C998   A0A0A9VZE3   A0A034VZD6   A0A2R7VVJ0  

PDB

6FQP     E-value=1.06063e-07,     Score=134

KEGG

101740424    no KO assigned | (RefSeq) homeobox protein caupolican

GO

GO:0005634   GO:0043565   GO:0006355   GO:0003677   GO:0042803   GO:0045317   GO:0007422   GO:0001700   GO:0046843   GO:0007476   GO:0000122   GO:0000981   GO:0045926   GO:0097374   GO:0001745   GO:0045893   GO:0005622   GO:0030145   GO:0006508   GO:0007169   GO:0016021  

Subcellular location

Nucleus  

Length:

400

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.01635

Exp number, first 60 AAs:

0.0834

Total prob of N-in:

0.03612

outside

1  -  400

 

 

Pi

18.186155

Theta

21.610092

Tajima's D

-2.186545

CLR

0.076017

CSRT

0.00574971251437428

Interpretation

Uncertain