Gene

KWMTBOMO00218

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr1(+):6999025-7001582      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.599

CDS

ATGTCAGAGCTCGACTCAGACCACCGACCTGTCGTTATGCAGCTCGGTCGCCCTCACAACCCAGTCACTGTTACGAGGACCATGGTGGATTGGAATAAGCTGGGCACGTGCCTAGCCGACGCCGCTCCGCCAATCCTCCCTTACGGCCCGGATTCGAATCCATCCCCCGAGGACACCGTCGAATCCATAAACATCATTACCGATCACATCTCTTCCGCGATCATTAGATCTTCTAAAGAAGTCGATGTGGAGGACAGCTTCCACCGCATCAGACTGTCCCCCGATCTTAGGAATCTCTTAAGAGTTAGGAACGCGGCAATCCGGGCCTACGATCGTCTTCCCACGCATTCAAACCGGATTCGGATGCGTCGTCTACAACGCGAAGTCCACTCCCGCTTAAGCGACGCGCGTAACGATAATTGGCATAGTTATTTAGAACAACTCGCGCCCTCCCACCAAGCATACTGGCGACTAGCTAGGACTCTCAAATCCGAAACTACCGCTACTATGCCTCCCCTCGTACGCCCCTCAGGCCAACCACCGGCATTCGATGACGATGACAAGGCTGAGCTGCTGGCCGATGCACTGCAAGAGCAGTGCACCACCAGCACTCAACACGCGGACCCCGAACACACCGAGTTAGTCGACAGGGAGGTCGAGCGCAGAGCTTCCCTGCCGCCCTCGGACGCGTTACCCCCCATTACCACTGACGAAGTTAGAGACGCGATCCACAACCTACAACCTAGGAAGGCACCCGGCTCCGACGGCATCCACAACCGCGCGCTTAAACTCTTGCCAGTCCAACTGATAGCAATGTTGGCTACAATTTTAAATGCCGCTATGACGCACTGCATCTTTCCCGCGGTGTGGAAAGAAGCGGACGTTATCGGTATACATAAGCCGGGCAAACCGACAAACGAAACTTCCAGTTACCGTCCGATTAGTCTCCTCTCGACGATAGGAAAAATTTACGAACGGCTCCTTAGGAAACGCCTCTGGGATTTTGTTACCGCGAACAAAATTCTCATAGACGAACAGTTCGGATTCCGCTCAAAACACTCATGCGTACAACAAGTGCACCGCCTCACGGAGCACATTCTGATAGGACTAAATAGGCGTAAACAAATCCCGACCGGCGCCCTCTTCTTCGACATCGCGAAGGCGTTCGACAAAGTCTGGCACAACGGTTTAATTTATAAACTGTACAACATGGGAGTGCCAGACAGACTCGTGCTCATCATACGAGACTTCTTGTCGAACCGTTCGTTTCGATATCGAGTAGAGGGAACTCGTTCTCGTCCCCGTCAACTGACCGCCGGAGTCCCGCAAGGCTCCGCGCTCTCCCCGTTATTATTTAGTTTGTATATCAATGATATACCCCGGTCTCCGGAGACCCATCTAGCGCTCTTCGCCGATGACACGGCTATCTACTACTCGTGTAGGAAGATGTCGCTGCTTCATCGGCGACTCCAGATCGCAGTAGCCACCCTGGGACAGTGGTTCCGGAAGTGGCGAATAGACATCAACCCCACGAAAAGCGCAGCGGTGCTCTTCAAAAGGGGTCGCCCTCCGAACATCACTTCGAGCATCCCACTCCGTAGTAGGCGCGCAAACACCTCCGCCGTTAGTCCCATCACTCTCTTTGGCCAGCCCATTCCGTGGGTCTCGAAGGTCAAATATCTAGGCGTCACCCTCGACAGAGGGATGACATTCCGTCCCCATATAAAAACGGTACGCGACCGCGCCGCGTTTATTCTAGGACGACTCTATCCAATGCTTTGTAGTCGAAGCAAACTGTCCCTCCGTAATAAGGTAACTCTCTACAAAACTTGTATACGCCCCGTCATGACGTATGCAAGCGTAGTGTTCGCTCACGCAGCCCGCACCAACTTGAAATCCCTTCAGGTTATTCAATCACGATTCTGCAGGATAGCCGTCGGAGCGCCTTGGTTCCTTAGGAATGTGGATCTCCACGACGACCTGGAGCTCGACTCTTTTAGTAAGTATCTACAGTCGGCATCGCTGCGCCATTTTGAGAAGGCGGCACGACATGAGAACCCTCTCATCGTAGCCGCTGGAAATTACATACCCGACCCAGTAGACCGAATGGTAAACCGTCGACGTCGCCCAAAGCACGTCATTACGGATCCTCCTGATCCATTAACGGTGCTTTTAGGCACCACAAGCACCGGTCACCGTCCTCGTCGAACCCGTCGCTTGCGACGAAGGGCTCGACGAGCGAACTAA

Protein

MSELDSDHRPVVMQLGRPHNPVTVTRTMVDWNKLGTCLADAAPPILPYGPDSNPSPEDTVESINIITDHISSAIIRSSKEVDVEDSFHRIRLSPDLRNLLRVRNAAIRAYDRLPTHSNRIRMRRLQREVHSRLSDARNDNWHSYLEQLAPSHQAYWRLARTLKSETTATMPPLVRPSGQPPAFDDDDKAELLADALQEQCTTSTQHADPEHTELVDREVERRASLPPSDALPPITTDEVRDAIHNLQPRKAPGSDGIHNRALKLLPVQLIAMLATILNAAMTHCIFPAVWKEADVIGIHKPGKPTNETSSYRPISLLSTIGKIYERLLRKRLWDFVTANKILIDEQFGFRSKHSCVQQVHRLTEHILIGLNRRKQIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLTAGVPQGSALSPLLFSLYINDIPRSPETHLALFADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRIDINPTKSAAVLFKRGRPPNITSSIPLRSRRANTSAVSPITLFGQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLYKTCIRPVMTYASVVFAHAARTNLKSLQVIQSRFCRIAVGAPWFLRNVDLHDDLELDSFSKYLQSASLRHFEKAARHENPLIVAAGNYIPDPVDRMVNRRRRPKHVITDPPDPLTVLLGTTSTGHRPRRTRRLRRRARRAN

Uniprot

Q9XXW0   Q93137   Q9BPQ0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
A0A139WA11   A0A139W8G9   V5GNJ2   V5GNF3   J9KKL3   A0A2S2PR14   A0A023EYS8   A0A2S2QEE0   Q07995   A0A2S2PPK8   A0A3N5Z7I3   A0A023EZE6   A0A224XF24   X1WLB2   A0A2H8U0H5   A0A2S2Q352   A0A2M4BEF4   A0A2M4BEZ9   A0A2S2Q383   A0A2J7R8R8   J9KC83   A0A2J7R7D0   A0A2M4BDA5   A0A2M4BD66   A0A2M4BD62   A0A2J7PDM0   J9M522   A0A0L0CBP5   J9LC21   V9GZF1   A0A2S2NGV8   A0A1Y1LKN6   D7EM17   J9KCZ4   A0A1Y1KFR3   X1WZH0   A0A224X6U5   A0A023F6S4   A0A2S2N814   A0A2J7Q0Q6   A0A2J7QFL0   A0A224X6Q4   A0A2J7R2E1   A0A2M4BD67   K7IN67   A0A2S2N9P4   A0A2J7RKP3   A0A087UCW3   A0A2J7R6U1   A0A2M4BDV6   A0A2J7QR37   A0A224X6S1   A0A2J7RB54   X1WNI2   A0A0A9YJ00   A0A069DZC5   A0A0A9YU04   A0A224X746   A0A224XI99   J9LFC9   A0A069DW01   A0A2M4CV42   A0A0C9RJA4   A0A087UGF5   A0A2J7PU96   A0A2S2R9D4   A0A2J7QY69   A0A2J7PBY3  

Pubmed

10333566    26354079    10380107    28004739    18362917    19820115    + More
25474469    8387152    30086797    26108605    1327974    20075255    25401762    26334808   

EMBL

AB018558    BAA76304.1    U07847    AAA17752.1    AB055391    BAB21761.1    + More
KQ459265    KPJ02064.1    AF081103    AAC72921.1    GEZM01008457    JAV94772.1    KQ971729    KYB24751.1    KQ973342    KXZ75569.1    GALX01005299    JAB63167.1    GALX01005359    JAB63107.1    ABLF02029306    ABLF02029314    ABLF02060138    GGMR01019198    MBY31817.1    GBBI01004395    JAC14317.1    GGMS01006359    MBY75562.1    S59870    AAB26437.2    GGMR01018716    MBY31335.1    RPOV01000134    RPJ78669.1    GBBI01004571    JAC14141.1    GFTR01008038    JAW08388.1    ABLF02042518    ABLF02057746    GFXV01007093    MBW18898.1    GGMS01002955    MBY72158.1    GGFJ01002256    MBW51397.1    GGFJ01002257    MBW51398.1    GGMS01002992    MBY72195.1    NEVH01006721    PNF37225.1    ABLF02033757    NEVH01006736    PNF36716.1    GGFJ01001842    MBW50983.1    GGFJ01001844    MBW50985.1    GGFJ01001843    MBW50984.1    NEVH01026386    PNF14434.1    ABLF02024246    JRES01000644    KNC29657.1    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    M95171    AAA29354.1    GGMR01003407    MBY16026.1    GEZM01053022    JAV74219.1    KQ973412    EFA12510.2    ABLF02008463    GEZM01084969    JAV60363.1    ABLF02034467    GFTR01008251    JAW08175.1    GBBI01001646    JAC17066.1    GGMR01000676    MBY13295.1    NEVH01019964    PNF22161.1    NEVH01014858    PNF27387.1    GFTR01008279    JAW08147.1    NEVH01007838    PNF34986.1    GGFJ01001858    MBW50999.1    GGMR01000857    MBY13476.1    NEVH01002716    PNF41415.1    KK119261    KFM75202.1    NEVH01006754    PNF36554.1    GGFJ01001857    MBW50998.1    NEVH01011985    PNF31054.1    GFTR01008271    JAW08155.1    NEVH01005938    PNF38077.1    ABLF02008153    ABLF02008462    ABLF02008464    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    GBGD01000880    JAC88009.1    GBHO01021814    GBHO01010549    JAG21790.1    JAG33055.1    GFTR01008151    JAW08275.1    GFTR01008256    JAW08170.1    ABLF02023911    GBGD01000799    JAC88090.1    GGFL01005012    MBW69190.1    GBYB01008290    JAG78057.1    KK119692    KFM76444.1    NEVH01021205    PNF19912.1    GGMS01017365    MBY86568.1    NEVH01009134    PNF33528.1    NEVH01027074    PNF13841.1   

Proteomes

UP000053268    UP000007266    UP000007819    UP000235965    UP000037069    UP000002358    + More
UP000054359   

PRIDE

Q9XXW0    Q93137    Q9BPQ0   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF07530   PRE_C2HC
PF03372   Exo_endo_phos
PF07727   RVT_2

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR006579   Pre_C2HC_dom       
IPR013103   RVT_2       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

Q9XXW0   Q93137   Q9BPQ0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
A0A139WA11   A0A139W8G9   V5GNJ2   V5GNF3   J9KKL3   A0A2S2PR14   A0A023EYS8   A0A2S2QEE0   Q07995   A0A2S2PPK8   A0A3N5Z7I3   A0A023EZE6   A0A224XF24   X1WLB2   A0A2H8U0H5   A0A2S2Q352   A0A2M4BEF4   A0A2M4BEZ9   A0A2S2Q383   A0A2J7R8R8   J9KC83   A0A2J7R7D0   A0A2M4BDA5   A0A2M4BD66   A0A2M4BD62   A0A2J7PDM0   J9M522   A0A0L0CBP5   J9LC21   V9GZF1   A0A2S2NGV8   A0A1Y1LKN6   D7EM17   J9KCZ4   A0A1Y1KFR3   X1WZH0   A0A224X6U5   A0A023F6S4   A0A2S2N814   A0A2J7Q0Q6   A0A2J7QFL0   A0A224X6Q4   A0A2J7R2E1   A0A2M4BD67   K7IN67   A0A2S2N9P4   A0A2J7RKP3   A0A087UCW3   A0A2J7R6U1   A0A2M4BDV6   A0A2J7QR37   A0A224X6S1   A0A2J7RB54   X1WNI2   A0A0A9YJ00   A0A069DZC5   A0A0A9YU04   A0A224X746   A0A224XI99   J9LFC9   A0A069DW01   A0A2M4CV42   A0A0C9RJA4   A0A087UGF5   A0A2J7PU96   A0A2S2R9D4   A0A2J7QY69   A0A2J7PBY3  

PDB

6AR3     E-value=0.000314483,     Score=107

KEGG

105842121    no KO assigned | (RefSeq) uncharacterized LOC105842121

GO

GO:0003964   GO:0004519  

Length:

748

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.689979999999997

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01169

outside

1  -  748

 

 

Pi

0.526857

Theta

0.583808

Tajima's D

-0.331929

CLR

0.009466

CSRT

0.330033498325084

Interpretation

Uncertain