Gene

KWMTBOMO00217

Pre Gene Modal

BGIBMGA000574

Annotation

PREDICTED:_ankyrin_repeat_domain-containing_protein_SOWAHC-like_isoform_X4_[Bombyx_mori]

Location

Bomo_Chr1(-):6971981-6984634      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.045

CDS

ATGCAGTATACTGCGATGCATTGGGCCTGTAAGCGAGGCGATGAAAATTTGGTGAAATTGCTAGGAGGAGTCGCTAGGCATGTTGTCAACGAACGTTCGGTTTTAAGTATCCTGTTAAAGTGTGATTACGTTATTTTTCATGTGGTGCCCGATACATGCCGTCGTCGATGGAAACAGAACGGGGGATACACGCCGCTACACATTGCTATGCAATTTCGACACGAGCATGTTTACCGGCTACTAGTCGAAGTATATGATGCAGATCCCAACATACGGGATTGGTCTGGAAGGAAACCAAGGCAATATTTAGTCCATATGGATACGTCATTATCGCCCGGCTCATACAGAAAAAAGGAGGGCTTCCTTCGTATCGGTTCGCTCAACGTTCGCGTTAAAAAAACAACGGAGGCCTTCAGTAATTTCCTCGGTGTTGGTGCGACGAGGTCGTCCGCGTACATGCCGAAATCGGCTCGGGAACGCGACGAAAGACGCTCCGACGACGGCGAACTTCACAAGACCTGGGGCTCTGCTGATAATATACAGAAGGATGACAAGTTAATGCCCCCGCCAATGAGTAGTAAAGTACGACGCAGGGGAGCCACGGGACGTCGCGGCGTAGGAGCTGCCCACAGTCGCAGCACTCCTTCCACGCCCGATCAGCCTCGAGCTCAGATGGGCGTCCCGGAAGAGAGAGATTCCGATTCTGATTCCGCAGCGGGATTCCATTCAGCATGGCGACAGCAACGTGCTTCAAACTGTACATAG

Protein

MQYTAMHWACKRGDENLVKLLGGVARHVVNERSVLSILLKCDYVIFHVVPDTCRRRWKQNGGYTPLHIAMQFRHEHVYRLLVEVYDADPNIRDWSGRKPRQYLVHMDTSLSPGSYRKKEGFLRIGSLNVRVKKTTEAFSNFLGVGATRSSAYMPKSARERDERRSDDGELHKTWGSADNIQKDDKLMPPPMSSKVRRRGATGRRGVGAAHSRSTPSTPDQPRAQMGVPEERDSDSDSAAGFHSAWRQQRASNCT

Uniprot

H9ITJ4   A0A2H1VUH1   A0A2A4J7S8   A0A212EMN0   A0A194QW18   A0A194PTC7   + More
J9L4F6   A0A154P8Y4   A0A0A9X106   A0A151J030   A0A023EU59   A0A0A9WYF5   A0A1Q3FWW0   A0A1Y1L3U8   A0A0C9R8D4   A0A1Q3FX68   A0A158N8X1   A0A1B6H1K8   A0A0C9QXK2   E0W0Q8   A0A1Y1L6C3   A0A2C9H8A8   A0A2C9GPS3   A0A1S4GNF8   A0A1Y1L452   A0A2P8XXV0   A0A1B6KNZ5   A0A1B6LM90   A0A224XG55   A0A026W5Z9   A0A195CU83   K7IW53   A0A1B6LV74   A0A1B6E2K1   A0A1B6LXW9   A0A195B4X1   A0A1B6DDA7   A0A1B6CB35   A0A1Y1L7K5   A0A3L8DBS8   A0A0L7QZR6   A0A232FIZ4   A0A088ATZ9   A0A139WLJ4   E2AIB1   A0A336MNF3   Q2M0L3   A0A0R3P3K1   E2C0I2   F4WMN7   A0A195FQI9   B4IX66   A0A3B0KIZ6   A0A0J9RVH9   A0A1Y1L6B0   B4GRH1   A0A1S3DJ19   A0A1A9XGS5   A0A1D2MAD6   A0A182JJR9   A0A0P4Y8Z9   A0A0P6JU22   A0A0P5SIH7   A0A0P4W1G4   A0A0P5GGP7   A0A0M9A5M0   A0A182U4G7  

Pubmed

19121390    22118469    26354079    25401762    24945155    28004739    + More
21347285    20566863    12364791    29403074    24508170    20075255    30249741    28648823    18362917    19820115    20798317    15632085    17994087    21719571    22936249    27289101   

EMBL

BABH01006819    ODYU01004512    SOQ44470.1    NWSH01002669    PCG67718.1    AGBW02013811    + More
OWR42760.1    KQ461108    KPJ09160.1    KQ459594    KPI96228.1    ABLF02024657    ABLF02024659    KQ434846    KZC08303.1    GBHO01031147    GBHO01031146    JAG12457.1    JAG12458.1    KQ980658    KYN14733.1    GAPW01000663    JAC12935.1    GBHO01031153    GBHO01031150    GBHO01031149    GBHO01031148    GBHO01016626    GBHO01016625    GBHO01016623    GBHO01016622    GBHO01016620    JAG12451.1    JAG12454.1    JAG12455.1    JAG12456.1    JAG26978.1    JAG26979.1    JAG26981.1    JAG26982.1    JAG26984.1    GFDL01002951    JAV32094.1    GEZM01065706    JAV68363.1    GBYB01012649    JAG82416.1    GFDL01002969    JAV32076.1    ADTU01008867    ADTU01008868    ADTU01008869    ADTU01008870    ADTU01008871    ADTU01008872    ADTU01008873    ADTU01008874    ADTU01008875    ADTU01008876    GECZ01001214    JAS68555.1    GBYB01005402    JAG75169.1    DS235862    EEB19214.1    GEZM01065708    JAV68361.1    APCN01004680    APCN01004681    AAAB01008948    GEZM01065705    JAV68364.1    PYGN01001183    PSN36825.1    GEBQ01026817    JAT13160.1    GEBQ01015174    JAT24803.1    GFTR01007628    JAW08798.1    KK107455    EZA50464.1    KQ977279    KYN04215.1    GEBQ01012386    JAT27591.1    GEDC01005146    JAS32152.1    GEBQ01011523    JAT28454.1    KQ976618    KYM79229.1    GEDC01013615    JAS23683.1    GEDC01026611    JAS10687.1    GEZM01065709    JAV68360.1    QOIP01000010    RLU17573.1    KQ414676    KOC64088.1    NNAY01000148    OXU30553.1    KQ971321    KYB28754.1    GL439754    EFN66822.1    UFQT01001628    SSX31235.1    CH379069    EAL30917.3    KRT07758.1    GL451797    EFN78541.1    GL888218    EGI64514.1    KQ981382    KYN42189.1    CH916366    EDV97398.1    OUUW01000009    SPP85061.1    CM002912    KMY99264.1    GEZM01065711    JAV68358.1    CH479188    EDW40356.1    LJIJ01002324    ODM89844.1    GDIP01234628    JAI88773.1    GDIQ01008368    JAN86369.1    GDIP01139340    JAL64374.1    GDRN01091941    JAI60197.1    GDIQ01241198    JAK10527.1    KQ435729    KOX77707.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053240    UP000053268    UP000007819    + More
UP000076502    UP000078492    UP000005205    UP000009046    UP000076407    UP000075840    UP000245037    UP000053097    UP000078542    UP000002358    UP000078540    UP000279307    UP000053825    UP000215335    UP000005203    UP000007266    UP000000311    UP000001819    UP000008237    UP000007755    UP000078541    UP000001070    UP000268350    UP000008744    UP000079169    UP000092443    UP000094527    UP000075880    UP000053105    UP000075902   

PRIDE

H9ITJ4   

Pfam

PF12796   Ank_2        + More
PF00023   Ank
PF09631   Sen15

Interpro

IPR020683   Ankyrin_rpt-contain_dom        + More
IPR036770   Ankyrin_rpt-contain_sf       
IPR002110   Ankyrin_rpt       
IPR036167   tRNA_intron_Endo_cat-like_sf       
IPR011856   tRNA_endonuc-like_dom_sf       
IPR018593   tRNA-endonuc_su_Sen15       

SUPFAM

SSF48403   SSF48403        + More
SSF53032   SSF53032       

Gene 3D

1.25.40.20     3.40.1350.10    

CDD

cd00204  ANK

ProteinModelPortal

H9ITJ4   A0A2H1VUH1   A0A2A4J7S8   A0A212EMN0   A0A194QW18   A0A194PTC7   + More
J9L4F6   A0A154P8Y4   A0A0A9X106   A0A151J030   A0A023EU59   A0A0A9WYF5   A0A1Q3FWW0   A0A1Y1L3U8   A0A0C9R8D4   A0A1Q3FX68   A0A158N8X1   A0A1B6H1K8   A0A0C9QXK2   E0W0Q8   A0A1Y1L6C3   A0A2C9H8A8   A0A2C9GPS3   A0A1S4GNF8   A0A1Y1L452   A0A2P8XXV0   A0A1B6KNZ5   A0A1B6LM90   A0A224XG55   A0A026W5Z9   A0A195CU83   K7IW53   A0A1B6LV74   A0A1B6E2K1   A0A1B6LXW9   A0A195B4X1   A0A1B6DDA7   A0A1B6CB35   A0A1Y1L7K5   A0A3L8DBS8   A0A0L7QZR6   A0A232FIZ4   A0A088ATZ9   A0A139WLJ4   E2AIB1   A0A336MNF3   Q2M0L3   A0A0R3P3K1   E2C0I2   F4WMN7   A0A195FQI9   B4IX66   A0A3B0KIZ6   A0A0J9RVH9   A0A1Y1L6B0   B4GRH1   A0A1S3DJ19   A0A1A9XGS5   A0A1D2MAD6   A0A182JJR9   A0A0P4Y8Z9   A0A0P6JU22   A0A0P5SIH7   A0A0P4W1G4   A0A0P5GGP7   A0A0M9A5M0   A0A182U4G7  

PDB

4ZFH     E-value=0.00867445,     Score=90

KEGG

105842161    no KO assigned | (RefSeq) ankyrin repeat domain-containing protein SOWAHC-like

GO

GO:0000213   GO:0003676   GO:0006388   GO:0005515   GO:0006811   GO:0016020   GO:0005524   GO:0005622   GO:0030145   GO:0006508   GO:0007169   GO:0016021  

Length:

254

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0415100000000001

Exp number, first 60 AAs:

0.03835

Total prob of N-in:

0.17661

outside

1  -  254

 

 

Pi

16.293771

Theta

23.399927

Tajima's D

-1.302739

CLR

0.02041

CSRT

0.0842957852107395

Interpretation

Uncertain