SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00213
Pre Gene Modal
BGIBMGA000579
Annotation
PREDICTED:_DENN_domain-containing_protein_1B-like_isoform_X2_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 3.774
 

Sequence

CDS
ATGGGTTCCAGAGTAAGAGAAACTGTAAAATTTTTATTTGAGTTATTCTGTGAAGTATCGCCTGGTGATCATTTAAAGGAACCATATGTGTTATTCAAGTACCCAGAATCATATAAAAATGAAGAAGAGATTAAGAGTATTCCAAAATTTACCTTTCCGTGTTCATTAGAAAACTCTTTTGCTCAACACTATTCATTTGTGTTGACATCAATGGATTCCAAGTATACATTTTGTTTTTGCCGATATGACCCTAAAGCCAACACTGCTTTAGTGATCTTATCACATCTGCCTTGGCATGATATATTTTACAAATTATTAAATTGCATAGCGAATATAATAAACAGTCCGGAGCGGGATCAACTGCATTCGTTCCTGGAAGCGTGTCGGATACGACCTCCAATGCCGGGACATACCCTCAAGGTTATATACAATGCCGGTCACAGTGTATTTACATGTCAGTGCCCTGACAGCAACAAGCTGCCAAGTATCCCAGACAATTGCAACCTAACAGAATACTTCAGTGCGGTCGATACAAAATGCATGGCGGGTCTGTGGGCAGCATTGTTACACGAACGTCGAGTGGCCATCGTAGCATCGAAACCATCGCGTCTGTCGGCTTGTGTCCAAGCGGCTAACGCGACTCTGTTCCCGATGTCATGGCAACATATTTTCATTCCAATATTACCGAAGCATTTGGTCGATTACATGCTGGCGCCGATGCCATTTCTGATTGGAGTTCCTAGAAGCGTTATGGAGAATGTTAGGATGTCTGAGATAGGTGACGTTGTGATTTTAGATGTAGACGCGAATGAGCTTAGATCTCCTTTCAACGACTTGGAGACTCTTCCCCCTGAGTTGATTTCGAGTTTAAAGAAGGCTTTGAGCGACAAAAACGCTCTTGGAGATGCTGTTTCAAGAGCATTTTTACGCGCCCTTGTCTGTTTAATCGGCGGGTACCGCGATGCGATCAAAATTGAAAATGGTCAACTGATTACATTCAATCCAGAAGCTTTTGTGAAAACGAGGAAAAACATGCAGCCATTCCTTAGAAAAATACTACAATCCCAAATATTCCAACAGTTTATAGACGAAAGATTGGATTTGCTCAATTCCGGACGGGGTTTCAACGATGAGTTCGAAGTAGAATGCAACGCGTACGCGGATAAATTGAACACGGGTAGTGGTCAGAAACTAAAGCAACAGTACAGAGATTGGGCCAAGACGGTCAAGAAAGAAGGTGGAGCTTTCTTCAAAACCGTCAAAGATAAGGTACGCCAGGGAGGCAAAAACATGAAATCCGCCGTCAGAGGTCTCAAAAATAAAATCCCTAAATCGGGATCTCGACCGTCTTCTATCAACACAACAGATGAGAGCAGGTACTCGTGTGGTTCGGCCACGCCCGTGTCGTCGGATTCATCTGATTCTCCATCGCACGATCTCCCCCCGCCCCGCGAGCCCCCGCCCGCCCTCACCCTCGACCTACTCACCGAAATGGAGTACCTTTTCGTGAACAAGAGCGCACAACGACGCGACAGCTTCCCGAACAGTTCGCGCAACACTGAAATTAGTCTACCCGATAAGGCAAAAACACTGTCACCATGCCTCCCACCCCGGTTACCGGAACGTCCCCAACTCCCAGTCCGTTATCCGATAATTTCCACGAGGAAATTAATAGATCTGTCTGACGCTCCGACGCCGCCGCCGCGAGCCACGCCCGCTCCACAGTACAATGCGCATTTTGTCAGTAACATCACGAAAAACGATGTGAGAACGACTACAGACCTCCACACTAGCTCCATTTGCTTCAGTGAGGGCAACGACAAGGCCAAACTGAAACTGACGCTGTCGTCTAATCAGAGGAAGGCGGCGGTACAGAGCACGCAGCCGTGTAACGGTAACGTGCCGCCTAGAGTAGCGCCCTCTGTGGCCAGACCGAGCCAACACAGGGCCAGGTCCGGCCATGACATTCCCGCAAACAAAAAGAGAATAATAGAGCCGTGTGGCTCAGATACTGATCTCATTAAACTGGACGATTCGCCGACAGACCTCGAAGATTTCGATCCGTTAAAATTACGAGATAAAAATCAGAAAAACGAGCCAATCAAATCATCCACGGATAGTGCTCTCTTACATGAATACGGGCTCGATTTCAGTCGATTCGGTCTGTTAGATTTTAATGCGGGAACTAGCCAACAAGAAGCGACATCTAGCGTTCCAAAAGGTTGGACCACATTCAATTAA
Protein
MGSRVRETVKFLFELFCEVSPGDHLKEPYVLFKYPESYKNEEEIKSIPKFTFPCSLENSFAQHYSFVLTSMDSKYTFCFCRYDPKANTALVILSHLPWHDIFYKLLNCIANIINSPERDQLHSFLEACRIRPPMPGHTLKVIYNAGHSVFTCQCPDSNKLPSIPDNCNLTEYFSAVDTKCMAGLWAALLHERRVAIVASKPSRLSACVQAANATLFPMSWQHIFIPILPKHLVDYMLAPMPFLIGVPRSVMENVRMSEIGDVVILDVDANELRSPFNDLETLPPELISSLKKALSDKNALGDAVSRAFLRALVCLIGGYRDAIKIENGQLITFNPEAFVKTRKNMQPFLRKILQSQIFQQFIDERLDLLNSGRGFNDEFEVECNAYADKLNTGSGQKLKQQYRDWAKTVKKEGGAFFKTVKDKVRQGGKNMKSAVRGLKNKIPKSGSRPSSINTTDESRYSCGSATPVSSDSSDSPSHDLPPPREPPPALTLDLLTEMEYLFVNKSAQRRDSFPNSSRNTEISLPDKAKTLSPCLPPRLPERPQLPVRYPIISTRKLIDLSDAPTPPPRATPAPQYNAHFVSNITKNDVRTTTDLHTSSICFSEGNDKAKLKLTLSSNQRKAAVQSTQPCNGNVPPRVAPSVARPSQHRARSGHDIPANKKRIIEPCGSDTDLIKLDDSPTDLEDFDPLKLRDKNQKNEPIKSSTDSALLHEYGLDFSRFGLLDFNAGTSQQEATSSVPKGWTTFN

Summary

Pfam
PF03455   dDENN        + More
PF02141   DENN
PF03456   uDENN
Interpro
IPR037516   Tripartite_DENN        + More
IPR005112   dDENN_dom       
IPR001194   cDENN_dom       
IPR005113   uDENN_dom       
IPR040032   DENND1A/B/C       
PDB
6EKK     E-value=4.99526e-95,     Score=890

Ontologies

Topology

Length:
746
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0921700000000001
Exp number, first 60 AAs:
0.00021
Total prob of N-in:
0.00465
outside
1  -  746
 
 

Population Genetic Test Statistics

Pi
3.020513
Theta
14.538278
Tajima's D
-1.970866
CLR
0.049125
CSRT
0.0140992950352482
Interpretation
Uncertain
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